Resource Type:
Polypeptide
Name:
DCAR_025636
Identifier:
DCAR_025636.mRNA-protein
Sequence:
MTDVAGDHRRPAPPQQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRI
RSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGR
VDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDD
EELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVD
IGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTS
RASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIG
DINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKV
PSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKT
YLANDDPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSG
MSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDLD*
Sequence Length:
500
Sequence Checksum:
66a2b17db69963b4901bece25e08490c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_025636, derives from mRNA, DCAR_025636. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BIE3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542040.1}))
HSP 1 Score: 882.093 bits (2278), Expect = 0.000e+0
Identity = 427/485 (88.04%), Postives = 447/485 (92.16%), Query Frame = 0
Match: A0A5J5BIE3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542040.1}))
HSP 1 Score: 882.093 bits (2278), Expect = 0.000e+0
Identity = 427/485 (88.04%), Postives = 447/485 (92.16%), Query Frame = 0
Query: 15 QQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
QQR GCCNPVKKPGPVSMEHVL AL ETKEER+ RIRSLFN FD AN GYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDY EFR+YMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIE+DDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER+YLVDIGEQAVIPDGISKHV ASKYLIAGGVAGAASRT TAPLDRLKV+LQVQT+RA I A++NIWKEGG LGFFRGNGLNV+KV PESAIKFY YE+LKN I D GDIGT+GRLVAGGLAGAVAQTAIYPMDLVKTRLQT ACE GKVP+LGKLS+DI V EGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTY+ +D +PGP VQLGCGTISGA+GATCVYPLQV+RTRMQAQ S ++TAY GMSDVF RT QHEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 23 QQRPGCCNPVKKPGPVSMEHVLLALQETKEERDTRIRSLFNIFDTANVGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERIYLVDIGEQAVIPDGISKHVSASKYLIAGGVAGAASRTVTAPLDRLKVILQVQTTRACIFPAIKNIWKEGGFLGFFRGNGLNVMKVGPESAIKFYAYEMLKNVIRDAKEGDNGDIGTTGRLVAGGLAGAVAQTAIYPMDLVKTRLQTSACEGGKVPNLGKLSKDIWVQEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYVLHDGEPGPFVQLGCGTISGAVGATCVYPLQVIRTRMQAQRSDTSTAYKGMSDVFWRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 507
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6XAL5 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027123926.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 428/483 (88.61%), Postives = 453/483 (93.79%), Query Frame = 0
Match: A0A6P6XAL5 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027123926.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 428/483 (88.61%), Postives = 453/483 (93.79%), Query Frame = 0
Query: 17 RSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
RSGCCNPVKKPGPVSM+HVL+AL ETKEER+ RI+SLFNFFD AN GYLDY QIE GLSALQIPAEYK+AK+LL VCDANRDGRVDY EFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI+ AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E + DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP+LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYE LK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 21 RSGCCNPVKKPGPVSMDHVLAALRETKEERDSRIKSLFNFFDSANVGYLDYTQIEKGLSALQIPAEYKFAKELLNVCDANRDGRVDYQEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIVPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEHQ-DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPNLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYEKLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 501
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TPQ3 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98290.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 427/482 (88.59%), Postives = 451/482 (93.57%), Query Frame = 0
Match: A0A068TPQ3 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98290.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 427/482 (88.59%), Postives = 451/482 (93.57%), Query Frame = 0
Query: 18 SGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
SGCCNPVKKPGPVSM+HVL+AL ETKEER+ RI+SLFNFFD AN GYLDY QIE GLSALQIPAEYK+AK+LL VCDANRDGRVDY EFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALV+AGIEMDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP+LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 22 SGCCNPVKKPGPVSMDHVLAALRETKEERDSRIKSLFNFFDSANVGYLDYTQIEKGLSALQIPAEYKFAKELLNVCDANRDGRVDYQEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVQAGIEMDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIAPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEDHRDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPNLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 502
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6X532 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027122760.1}))
HSP 1 Score: 878.626 bits (2269), Expect = 0.000e+0
Identity = 427/482 (88.59%), Postives = 450/482 (93.36%), Query Frame = 0
Match: A0A6P6X532 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027122760.1}))
HSP 1 Score: 878.626 bits (2269), Expect = 0.000e+0
Identity = 427/482 (88.59%), Postives = 450/482 (93.36%), Query Frame = 0
Query: 18 SGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
SGCCNPVKKPGPVSM+HVL+AL ETKEER+ RI+SLFNFFD AN GYLDY QIE GLSALQIPAEYK+AK+LL VCDANRDGRVDY EFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALV+AGIEMDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 22 SGCCNPVKKPGPVSMDHVLAALRETKEERDSRIKSLFNFFDSANVGYLDYTQIEKGLSALQIPAEYKFAKELLNVCDANRDGRVDYQEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVQAGIEMDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIAPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEDHRDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPKLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 502
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZAX9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41161.1}))
HSP 1 Score: 878.626 bits (2269), Expect = 0.000e+0
Identity = 420/492 (85.37%), Postives = 459/492 (93.29%), Query Frame = 0
Match: A0A5B6ZAX9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41161.1}))
HSP 1 Score: 878.626 bits (2269), Expect = 0.000e+0
Identity = 420/492 (85.37%), Postives = 459/492 (93.29%), Query Frame = 0
Query: 7 DHRRPAPPQQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLD 497
+HR+ Q+R GCCNPVKKPGPVS++HVL+AL ETKEER+ R+RSLFNFFD AN GY DY+QIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDY EFR+YMDDKELELYRIFQAIDVEH+GCILPEELWDALVKAGIE+DD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER+YLVDIGEQAVIPDGISKH +ASKYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RA I+ A++N+WKEGG LGFFRGNGLNV+KVAPESAIKFYT E+LKN IGD GE+ G+IGT+GRL+AGGLAGAVAQTAIYPMDLVKTRLQT A E GKVPSLGKLS+DI HEGPRAFYRG++PSLLGI+PYAGIDL AYETLKDMSKTY+ +D +PGPLVQLGCG ISG+LGA CVYPLQV+RTRMQAQHS+++TAY GMSDVF RTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSL+
Sbjct: 21 NHRQ----QRRPGCCNPVKKPGPVSLDHVLTALQETKEERDTRLRSLFNFFDAANVGYFDYSQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEIDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERIYLVDIGEQAVIPDGISKHGNASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAYIIPAIKNLWKEGGFLGFFRGNGLNVMKVAPESAIKFYTNEMLKNVIGDAKGESSGNIGTTGRLIAGGLAGAVAQTAIYPMDLVKTRLQTCASEGGKVPSLGKLSKDIWFHEGPRAFYRGLLPSLLGIVPYAGIDLTAYETLKDMSKTYVLHDSEPGPLVQLGCGAISGSLGAACVYPLQVIRTRMQAQHSNTSTAYKGMSDVFWRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLE 508
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDE3 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSR89395.1}))
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 418/487 (85.83%), Postives = 448/487 (91.99%), Query Frame = 0
Match: A0A2R6PDE3 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSR89395.1}))
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 418/487 (85.83%), Postives = 448/487 (91.99%), Query Frame = 0
Query: 13 PPQQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
P +R GCCNPVKKPGPVSM+HVLSAL ET EER+ RIRSLFNFFD AN GYLDYAQIE GLSALQIPAEYKYAKDLLRVCD NRDGRVDY EFR+YMDDKELELYRIFQAIDVEHNGCI+PEELWDALVKAGIE+DDEELA FVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER YLVDIGEQAVIP+ ISKHVHAS+YLIAG VAG ASRTATAPLDRLKV++QVQT+RASI +A++NIW+EGG LGFFRGNGLNV+KVAPESAIKFYTYE+LKN IGDI GE K +IG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQT AC+ GKVPSLGKLS+DI + EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLKDMSK Y+ +D +PGP VQLGCGTISGALGATCVYPLQV+RTR+QAQ ++ST AY GM DVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYE MKKSLDL
Sbjct: 7 PQGRRPGCCNPVKKPGPVSMDHVLSALQETMEERDARIRSLFNFFDDANAGYLDYAQIEKGLSALQIPAEYKYAKDLLRVCDRNRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHNGCIVPEELWDALVKAGIEIDDEELASFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERAYLVDIGEQAVIPERISKHVHASRYLIAGAVAGTASRTATAPLDRLKVIMQVQTTRASIGTAIKNIWREGGFLGFFRGNGLNVLKVAPESAIKFYTYEMLKNVIGDIKGEGKDNIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTCACDGGKVPSLGKLSKDIWIQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKRYILHDAEPGPFVQLGCGTISGALGATCVYPLQVIRTRLQAQRTNSTDAYKGMGDVFRRTLEHEGFRGFYKGLFPNLLKVVPAASITYLVYEAMKKSLDL 493
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZA59 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41162.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 421/493 (85.40%), Postives = 454/493 (92.09%), Query Frame = 0
Match: A0A5B6ZA59 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41162.1}))
HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 421/493 (85.40%), Postives = 454/493 (92.09%), Query Frame = 0
Query: 7 DHRRPAPPQQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
+HR+ Q+R GCCNPVKKPGPVS++HVL+AL ETKEER+ R+RSLFNFFD AN GY DY+QIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDY EFR+YMDDKELELYRIFQAIDVEH+GCILPEELWDALVKAGIE+DD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER+YLVDIGEQAVIPDGISKH +ASKYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RA I+ A++N+WKEGG LGFFRGNGLNV+KV PESAIKFY YE LKN I D E GDIGT+GRL+AGGLAGAVAQTAIYPMDLVKTRLQT ACE GKVP+LGKLS+DI V EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLKDMSKT++ +D +PGPLVQLGCGTISGALGATCVYPLQV+RTRMQAQ S ++ AY GMSDVF RT QHEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 21 NHRQ----QRRPGCCNPVKKPGPVSLDHVLTALQETKEERDTRLRSLFNFFDAANVGYFDYSQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEIDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERIYLVDIGEQAVIPDGISKHGNASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAYIIPAIKNLWKEGGFLGFFRGNGLNVMKVGPESAIKFYAYEKLKNVIRDAREEDHGDIGTTGRLIAGGLAGAVAQTAIYPMDLVKTRLQTCACEGGKVPNLGKLSKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKTHVLHDSEPGPLVQLGCGTISGALGATCVYPLQVIRTRMQAQRSDTSAAYKGMSDVFWRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 509
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QG87 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSS07601.1}))
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 418/484 (86.36%), Postives = 445/484 (91.94%), Query Frame = 0
Match: A0A2R6QG87 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSS07601.1}))
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 418/484 (86.36%), Postives = 445/484 (91.94%), Query Frame = 0
Query: 16 QRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
+R GCCNPVKKPGPVSM+HVLSAL ET ++R+ RIRSLFNFFD AN GYLDYAQIE GLSALQIPAEYKYA DLLRVCD NRDGRVDY EFR+YMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIE+DDE+LA FVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER YLVDIGEQAVIP+ ISKHVHASKYLIAG VAG ASRTATAPLDRLKVVLQVQT+RASI A++NIW+EGG LGFFRGNGLNV+KVAPESAIKFYTYE+LKN IGDI GE K DIG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQT C+ GKVPSLGKLS+DI V EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLKDMSK Y+ +D +PGP VQLGCGTISGALGATCVYPLQV+RTR+QAQ +++T AY GM DVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 28 RRPGCCNPVKKPGPVSMDHVLSALQETMDDRDTRIRSLFNFFDDANAGYLDYAQIEKGLSALQIPAEYKYANDLLRVCDRNRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDDEQLASFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERAYLVDIGEQAVIPERISKHVHASKYLIAGAVAGTASRTATAPLDRLKVVLQVQTTRASIGPAIKNIWREGGFLGFFRGNGLNVLKVAPESAIKFYTYEMLKNIIGDIKGEGKDDIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTCVCDGGKVPSLGKLSKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKRYILHDGEPGPFVQLGCGTISGALGATCVYPLQVIRTRLQAQRTNTTDAYKGMGDVFRRTLEHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 511
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G082 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5932656.1}))
HSP 1 Score: 867.455 bits (2240), Expect = 0.000e+0
Identity = 417/487 (85.63%), Postives = 448/487 (91.99%), Query Frame = 0
Match: A0A7J7G082 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5932656.1}))
HSP 1 Score: 867.455 bits (2240), Expect = 0.000e+0
Identity = 417/487 (85.63%), Postives = 448/487 (91.99%), Query Frame = 0
Query: 13 PPQQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 498
P +R GCCNPVKKPGPVSM+HVLSAL ETKEERE RIRSLF+FFD AN GYLDY QIEAGLSALQIPAEYKYAKDLL VCD N+DGRVDY EFR+YMDDKELELYRIFQAIDVEH+GCILPEELWDALVKAGI MDD+ELA FVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGE AVIP+GISKHVHASKYLIAG VAG ASRTATAPLDRLKVVLQVQT A I+ A++NIW+EGG LGFFRGNGLNV+KVAPESAIKFYTYE+LK IGDI GE K DIGTSGRL+AGGLAGAVAQTAIYPMDLVKTRLQT ACESGKVPSLGKLS+DI VHEGPRAFYRG+VPSLLGIIPYAGIDLAAYE LKD+SK Y+ +D +PGP VQLGCGTISGALGATCVYPLQV+RTR+QAQ ++++++Y GMSDVFR+T Q+EGLRGFYKGL PNLLKVVPAA ITYLVYETMKKSLDL
Sbjct: 19 PQGRRPGCCNPVKKPGPVSMDHVLSALQETKEEREIRIRSLFSFFDAANVGYLDYPQIEAGLSALQIPAEYKYAKDLLMVCDRNKDGRVDYQEFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIHMDDDELASFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEHAVIPEGISKHVHASKYLIAGAVAGTASRTATAPLDRLKVVLQVQTGPARIVPAIKNIWREGGFLGFFRGNGLNVMKVAPESAIKFYTYEMLKTIIGDIKGEQKADIGTSGRLIAGGLAGAVAQTAIYPMDLVKTRLQTFACESGKVPSLGKLSKDIWVHEGPRAFYRGVVPSLLGIIPYAGIDLAAYEALKDVSKRYILHDGEPGPFVQLGCGTISGALGATCVYPLQVIRTRLQAQRANTSSSYKGMSDVFRKTLQNEGLRGFYKGLLPNLLKVVPAAGITYLVYETMKKSLDL 505
BLAST of DCAR_025636 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G5C2A0 ((Uncharacterized protein {ECO:0000313|EMBL:PIA25404.1}))
HSP 1 Score: 862.833 bits (2228), Expect = 0.000e+0
Identity = 409/486 (84.16%), Postives = 451/486 (92.80%), Query Frame = 0
Match: A0A2G5C2A0 ((Uncharacterized protein {ECO:0000313|EMBL:PIA25404.1}))
HSP 1 Score: 862.833 bits (2228), Expect = 0.000e+0
Identity = 409/486 (84.16%), Postives = 451/486 (92.80%), Query Frame = 0
Query: 15 QQRSGCCNPVKKPGPVSMEHVLSALGETKEEREGRIRSLFNFFDGANGGYLDYAQIEAGLSALQIPAEYKYAKDLLRVCDANRDGRVDYYEFRKYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDLD 499
++RSG CNPVKK GPVSM+HVL AL ETKEERE RIRSLFNFFD AN GYLDY QIEAGLS LQIPAEYKYAKDLL+VCDANRDGRVDY EFR+YMDDKELELYRIFQAIDVEHNGCILPEELWDALV+AGIE+DDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEAT+ENIY+YWERV LVDIGEQA+IP+GISKHVHASKYLIAGG+AGAASRTATAPLDRLKVVLQVQT+RA I+ AV+ +WKEGGLLGFFRGNGLNV+KVAPESAI+FYTYE+LK I D G+ KGDIGT+GRLVAGG+AGA+AQTAIYPMDLVKTRLQT CE GKVPSLGKLS+DILVHEGPRAFYRG++PS+LGIIPYAGIDLAAYETLKD+SKTY+ ++ +PGPL QLGCGT+SGALGATCVYPLQV+RTR+QAQ S+S+TAY GMSDVF +T Q EG RGFYKG+FPN+LKVVP+ASITY+VYE MKK L LD
Sbjct: 18 ERRSGGCNPVKKAGPVSMDHVLLALRETKEERESRIRSLFNFFDVANVGYLDYTQIEAGLSGLQIPAEYKYAKDLLKVCDANRDGRVDYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVRAGIEIDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATLENIYQYWERVCLVDIGEQAIIPEGISKHVHASKYLIAGGIAGAASRTATAPLDRLKVVLQVQTTRARIMPAVKTLWKEGGLLGFFRGNGLNVLKVAPESAIRFYTYEMLKGLIVDARGQEKGDIGTAGRLVAGGMAGAIAQTAIYPMDLVKTRLQTCVCEGGKVPSLGKLSKDILVHEGPRAFYRGLIPSILGIIPYAGIDLAAYETLKDLSKTYILHESEPGPLTQLGCGTVSGALGATCVYPLQVIRTRLQAQQSNSSTAYKGMSDVFWKTLQREGFRGFYKGIFPNMLKVVPSASITYMVYEAMKKRLALD 503
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BIE3 | E-Value: 0.000e+0, PID: 88.04 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A6P6XAL5 | E-Value: 0.000e+0, PID: 88.61 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A068TPQ3 | E-Value: 0.000e+0, PID: 88.59 | (Uncharacterized protein {ECO:0000313|EMBL:CDO9829... [more] |
| A0A6P6X532 | E-Value: 0.000e+0, PID: 88.59 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A5B6ZAX9 | E-Value: 0.000e+0, PID: 85.37 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4116... [more] |
| A0A2R6PDE3 | E-Value: 0.000e+0, PID: 85.83 | (Calcium-binding mitochondrial carrier protein lik... [more] |
| A0A5B6ZA59 | E-Value: 0.000e+0, PID: 85.40 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4116... [more] |
| A0A2R6QG87 | E-Value: 0.000e+0, PID: 86.36 | (Calcium-binding mitochondrial carrier protein lik... [more] |
| A0A7J7G082 | E-Value: 0.000e+0, PID: 85.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5932... [more] |
| A0A2G5C2A0 | E-Value: 0.000e+0, PID: 84.16 | (Uncharacterized protein {ECO:0000313|EMBL:PIA2540... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |