Resource Type:
Polypeptide
Name:
DCAR_024207
Identifier:
DCAR_024207.mRNA-protein
Sequence:
MGRDVVPVDPSQPAVGLKKTKARGWIRLDSSGQDTILDVDKYAIMHRVHI
HARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDN
VIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALE
VALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRL
TARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPN
ISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREY
IDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYT
WNDNHGYMFKWVVSLSGIASALREYIDDTEDYINIQLDNHRNQLIQVPRE
SLL*
Sequence Length:
404
Sequence Checksum:
f38e3062db056586579eca62a96ed0fc
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_024207, derives from mRNA, DCAR_024207. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YKM7 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 304/375 (81.07%), Postives = 332/375 (88.53%), Query Frame = 0
HSP 2 Score: 55.4546 bits (132), Expect = 7.388e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Match: A0A1U7YKM7 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 304/375 (81.07%), Postives = 332/375 (88.53%), Query Frame = 0
Query: 1 MGRDVVPV-DPSQPAVGLKK--TKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
MGR+VVPV DPSQ VGLKK T +R W+ +D+SG +T+LDVDKYAIMHRV IHARDLRI+DPLLSYPSTILGRE AIV+NLEHIKAIIT+EEVLLRDP D+NV PVVEELRRRL +N RED E K++ Q+D E EEDESPFEFRALEVALEAICS+LAART ELET+ YPALD LTSKISSRNLDRVRKLKS MTRLTARVQKVRDELEQLLDDD DMADLYLSRKL+ ASP+SGS AASWF++SP I SKISRASRAS+AT RGDENDVEELEMLLEAYF QID T NKL TLREYID+TEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSL+AAIFGMNIPY+WN +HGYMFKWVV +S I SA+
Sbjct: 3 MGREVVPVMDPSQ-VVGLKKKGTGSRSWLLMDASGLETVLDVDKYAIMHRVQIHARDLRIIDPLLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPLDENVTPVVEELRRRLKPMNANREDQREEKDMNVQHDIETTEEDESPFEFRALEVALEAICSYLAARTLELETAVYPALDMLTSKISSRNLDRVRKLKSQMTRLTARVQKVRDELEQLLDDDGDMADLYLSRKLAGASPVSGSGAASWFLASPTIGSKISRASRASIATFRGDENDVEELEMLLEAYFGQIDSTFNKLITLREYIDNTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLIAAIFGMNIPYSWNKDHGYMFKWVVIISAIFSAV 376
HSP 2 Score: 55.4546 bits (132), Expect = 7.388e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Query: 372 LREYIDDTEDYINIQLDNHRNQLIQV 397
LREYID+TEDYINIQLDNHRNQLIQ+
Sbjct: 301 LREYIDNTEDYINIQLDNHRNQLIQL 326
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YPQ4 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 304/375 (81.07%), Postives = 332/375 (88.53%), Query Frame = 0
HSP 2 Score: 55.4546 bits (132), Expect = 7.388e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Match: A0A1S3YPQ4 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 304/375 (81.07%), Postives = 332/375 (88.53%), Query Frame = 0
Query: 1 MGRDVVPV-DPSQPAVGLKK--TKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
MGR+VVPV DPSQ VGLKK T +R W+ +D+SG +T+LDVDKYAIMHRV IHARDLRI+DPLLSYPSTILGRE AIV+NLEHIKAIIT+EEVLLRDP D+NV PVVEELRRRL +N RED E K++ Q+D E EEDESPFEFRALEVALEAICS+LAART ELET+ YPALD LTSKISSRNLDRVRKLKS MTRLTARVQKVRDELEQLLDDD DMADLYLSRKL+ ASP+SGS AASWF++SP I SKISRASRAS+AT RGDENDVEELEMLLEAYF QID T NKL TLREYID+TEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSL+AAIFGMNIPY+WN +HGYMFKWVV +S I SA+
Sbjct: 3 MGREVVPVMDPSQ-VVGLKKKGTGSRSWLLMDASGLETVLDVDKYAIMHRVQIHARDLRIIDPLLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPLDENVTPVVEELRRRLKPMNANREDQREEKDMNVQHDIETTEEDESPFEFRALEVALEAICSYLAARTLELETAVYPALDMLTSKISSRNLDRVRKLKSQMTRLTARVQKVRDELEQLLDDDGDMADLYLSRKLAGASPVSGSGAASWFLASPTIGSKISRASRASIATFRGDENDVEELEMLLEAYFGQIDSTFNKLITLREYIDNTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLIAAIFGMNIPYSWNKDHGYMFKWVVIISAIFSAV 376
HSP 2 Score: 55.4546 bits (132), Expect = 7.388e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Query: 372 LREYIDDTEDYINIQLDNHRNQLIQV 397
LREYID+TEDYINIQLDNHRNQLIQ+
Sbjct: 301 LREYIDNTEDYINIQLDNHRNQLIQL 326
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YPV5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0
Identity = 304/376 (80.85%), Postives = 332/376 (88.30%), Query Frame = 0
HSP 2 Score: 55.8398 bits (133), Expect = 7.277e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Match: A0A1S3YPV5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0
Identity = 304/376 (80.85%), Postives = 332/376 (88.30%), Query Frame = 0
Query: 1 MGRDVVPV-DPSQPAVGLKK--TKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLE-HIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
MGR+VVPV DPSQ VGLKK T +R W+ +D+SG +T+LDVDKYAIMHRV IHARDLRI+DPLLSYPSTILGRE AIV+NLE HIKAIIT+EEVLLRDP D+NV PVVEELRRRL +N RED E K++ Q+D E EEDESPFEFRALEVALEAICS+LAART ELET+ YPALD LTSKISSRNLDRVRKLKS MTRLTARVQKVRDELEQLLDDD DMADLYLSRKL+ ASP+SGS AASWF++SP I SKISRASRAS+AT RGDENDVEELEMLLEAYF QID T NKL TLREYID+TEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSL+AAIFGMNIPY+WN +HGYMFKWVV +S I SA+
Sbjct: 3 MGREVVPVMDPSQ-VVGLKKKGTGSRSWLLMDASGLETVLDVDKYAIMHRVQIHARDLRIIDPLLSYPSTILGRERAIVLNLEVHIKAIITSEEVLLRDPLDENVTPVVEELRRRLKPMNANREDQREEKDMNVQHDIETTEEDESPFEFRALEVALEAICSYLAARTLELETAVYPALDMLTSKISSRNLDRVRKLKSQMTRLTARVQKVRDELEQLLDDDGDMADLYLSRKLAGASPVSGSGAASWFLASPTIGSKISRASRASIATFRGDENDVEELEMLLEAYFGQIDSTFNKLITLREYIDNTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLIAAIFGMNIPYSWNKDHGYMFKWVVIISAIFSAV 377
HSP 2 Score: 55.8398 bits (133), Expect = 7.277e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0
Query: 372 LREYIDDTEDYINIQLDNHRNQLIQV 397
LREYID+TEDYINIQLDNHRNQLIQ+
Sbjct: 302 LREYIDNTEDYINIQLDNHRNQLIQL 327
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PXH9 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 299/380 (78.68%), Postives = 328/380 (86.32%), Query Frame = 0
HSP 2 Score: 58.151 bits (139), Expect = 1.410e-6
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 0
Match: A0A5N6PXH9 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 299/380 (78.68%), Postives = 328/380 (86.32%), Query Frame = 0
Query: 1 MGRDVVPVDP-SQPA-----VGL--KKTKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
M RDV+ V P +Q A VG+ KK R WI +D++ +TI+D+DKYAIMHRV IHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITAEEVLLRDPS+D+VIPVVEELRRRLP++N + E G Q+D E GE+ ESPFEFRALEV LEAICSF AARTTELET AYPALDELTSKISSRNLDRVRKLKS MTRLTARVQKVRDELE+LLDDD+DM+DLYLSRKLSSASP+SGS A SWF+ SP I SKISRASRAS+ T+ GDENDVEELEMLLEAYFMQIDGTLNKLT+LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVC+SIY+LV IFGMNIPYTWN++HGYMFKWVV LSG SA
Sbjct: 4 MVRDVLAVQPETQEASVDEGVGMLVKKKGTRSWILIDTNVNETIMDIDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPSNDDVIPVVEELRRRLPVVNASH------AEFGDQHDVETGEDAESPFEFRALEVFLEAICSFHAARTTELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELERLLDDDEDMSDLYLSRKLSSASPVSGSGATSWFLGSPTIGSKISRASRASVMTVHGDENDVEELEMLLEAYFMQIDGTLNKLTSLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSIYALVTGIFGMNIPYTWNEDHGYMFKWVVILSGAVSAF 377
HSP 2 Score: 58.151 bits (139), Expect = 1.410e-6
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
++LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 300 TSLREYIDDTEDYINIQLDNHRNQLIQL 327
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RUX5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 315/375 (84.00%), Postives = 338/375 (90.13%), Query Frame = 0
HSP 2 Score: 57.7658 bits (138), Expect = 1.519e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Match: A0A2R6RUX5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 315/375 (84.00%), Postives = 338/375 (90.13%), Query Frame = 0
Query: 1 MGRD--VVPVDPSQPAVGLKKTKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA-SPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
MGRD +VPVDP Q K +R WI +D+SGQDT+LDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITAEEVLLRDP DD VIPVVEELRRRLP +N RE + KELGGQ+D +AGEEDESPFEFRALEVALEAICSFLAARTTELET+AYPALD+LTSKISSRNLDR+RKLKS MTRLTARVQKVRDELEQLLDDDDDMADLYLSRKL+ A SP+SGS A+WF +SP I SKISRASRAS+AT+RGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCL+IYSLVA IFGMNIPYTWNDNHGYMFKWVV ++G A+
Sbjct: 1 MGRDGYIVPVDP-QAVAKKKPAGSRNWILMDASGQDTVLDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPLDDKVIPVVEELRRRLPPINAIREGQADAKELGGQHDIDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDDLTSKISSRNLDRIRKLKSTMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTIYSLVAGIFGMNIPYTWNDNHGYMFKWVVIIAGTICAV 374
HSP 2 Score: 57.7658 bits (138), Expect = 1.519e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 297 TTLREYIDDTEDYINIQLDNHRNQLIQL 324
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EES7 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 314/375 (83.73%), Postives = 337/375 (89.87%), Query Frame = 0
HSP 2 Score: 57.7658 bits (138), Expect = 1.519e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Match: A0A7J0EES7 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 314/375 (83.73%), Postives = 337/375 (89.87%), Query Frame = 0
Query: 1 MGRD--VVPVDPSQPAVGLKKTKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA-SPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
MGRD +VPVDP Q K +R WI +D+SGQDT+LDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITAEEVLLRDP DD VIPVVEELRRRLP +N RE + KELGGQ+D +AGEEDESPFEFRALEVALEAICSFLAARTTELET+AYPALD+LTSKISSRNLDR+RKLKS MTRLTARVQKVRDELEQLLDDDDDMADLYLSRKL+ A SP+S S A+WF +SP I SKISRASRAS+AT+RGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCL+IYSLVA IFGMNIPYTWNDNHGYMFKWVV ++G A+
Sbjct: 1 MGRDGYIVPVDP-QAVAKKKPAGSRNWILMDASGQDTVLDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPLDDKVIPVVEELRRRLPPINAIREGQADAKELGGQHDIDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDDLTSKISSRNLDRIRKLKSTMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASSPVSCSGPANWFPASPTIGSKISRASRASVATVRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTIYSLVAGIFGMNIPYTWNDNHGYMFKWVVIIAGTICAV 374
HSP 2 Score: 57.7658 bits (138), Expect = 1.519e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 297 TTLREYIDDTEDYINIQLDNHRNQLIQL 324
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6A866 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 287/368 (77.99%), Postives = 326/368 (88.59%), Query Frame = 0
HSP 2 Score: 53.1434 bits (126), Expect = 4.411e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
Match: A0A6P6A866 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 287/368 (77.99%), Postives = 326/368 (88.59%), Query Frame = 0
Query: 5 VVPVDPSQPAVGLKKTK-ARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASA 371
VVP DP KKT+ ++ W+ LDS+G+ T+LDVDKYAIMHRV+IHARDLRILDPLLSYPSTILGR+ AIV+NLEHIKAIITAEE+LLRDPSD+ V+PVV+EL+RRLP +N R+ +G QND E G+EDESPFEFRALEVALE+ICSFLAART ELE++AYPALDELTS+ISSRNLDRVRKLKS MTRLTARVQKVRDELEQLLDDD+DMADLYLSRKL+ ASP+SGS AA+W+ +SP I SKISRAS+AS+AT+RGDENDVEELEM+LEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLD +RNQLIQLELFL+SGTVCLSI+SLVA IFG+NIPYTWN NHGYMFKWV+ +G A
Sbjct: 4 VVPADPQALLTVKKKTQPSQSWVLLDSTGETTLLDVDKYAIMHRVNIHARDLRILDPLLSYPSTILGRDRAIVLNLEHIKAIITAEEILLRDPSDEYVVPVVQELQRRLPPVNAIRQGQ---DYMGSQNDVETGDEDESPFEFRALEVALESICSFLAARTLELESAAYPALDELTSQISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDEDMADLYLSRKLAGASPVSGSGAANWYPASPTIGSKISRASKASIATVRGDENDVEELEMILEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDTYRNQLIQLELFLTSGTVCLSIFSLVAGIFGVNIPYTWNTNHGYMFKWVIIFTGTFCA 368
HSP 2 Score: 53.1434 bits (126), Expect = 4.411e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLD +RNQLIQ+
Sbjct: 292 TTLREYIDDTEDYINIQLDTYRNQLIQL 319
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1H4U5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 304/377 (80.64%), Postives = 332/377 (88.06%), Query Frame = 0
HSP 2 Score: 57.3806 bits (137), Expect = 1.875e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Match: A0A6J1H4U5 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 304/377 (80.64%), Postives = 332/377 (88.06%), Query Frame = 0
Query: 1 MGRD--VVPVDPSQP-AVGLKKTKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTR-EDHGEGK-ELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
M RD VVPVDP V KK +R WI LD +GQ T+LD DKY IMHRV IHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITAEEV LRDP+D++VIPVVEEL+RRLP N + G+GK G Q+DGEA EED+SPFEFRALEVALEAICS+LAARTTELET+AYPALDELT+KISSRNLDRVRKLKS MTRLTARVQKVRDELEQLL+DDDDMADLYLSRK++S+SP+SGS A WF +SP I SKISRASRASMAT+RGDE+D+EELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLS+YSLV AIFGMNIPYTWN+NH YMFKWVV +SG+A AL
Sbjct: 1 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKANQGPQHDGEA-EEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACAL 376
HSP 2 Score: 57.3806 bits (137), Expect = 1.875e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 299 TTLREYIDDTEDYINIQLDNHRNQLIQL 326
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1KWM0 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 304/377 (80.64%), Postives = 332/377 (88.06%), Query Frame = 0
HSP 2 Score: 57.3806 bits (137), Expect = 1.960e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Match: A0A6J1KWM0 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 304/377 (80.64%), Postives = 332/377 (88.06%), Query Frame = 0
Query: 1 MGRD--VVPVDPSQP-AVGLKKTKARGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTR-EDHGEGKELGG-QNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
M RD VVPVDP V KK +R WI LD +GQ T+LD DKY IMHRV IHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITAEEV LRDP+D++VIPVVEEL+RRLP N + G+GK G Q+DGEA EED+SPFEFRALEVALEAICS+LAARTTELET+AYPALDELT+KISSRNLDRVRKLKS MTRLTARVQKVRDELEQLL+DDDDMADLYLSRK++S+SP+SGS A WF +SP I SKISRASRASMAT+RGDE+D+EELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLV AIFGMNIPYTWN+NH YMFKWVV +SG+A A+
Sbjct: 1 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKAYQGRQHDGEA-EEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACAI 376
HSP 2 Score: 57.3806 bits (137), Expect = 1.960e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 299 TTLREYIDDTEDYINIQLDNHRNQLIQL 326
BLAST of DCAR_024207 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZW70 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 313/375 (83.47%), Postives = 339/375 (90.40%), Query Frame = 0
HSP 2 Score: 58.151 bits (139), Expect = 1.215e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Match: A0A5B6ZW70 (Magnesium transporter {ECO:0000256|RuleBase:RU366041})
HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 313/375 (83.47%), Postives = 339/375 (90.40%), Query Frame = 0
Query: 1 MGRDVVPVDPSQPAVGLKKTKA--RGWIRLDSSGQDTILDVDKYAIMHRVHIHARDLRILDPLLSYPSTILGRENAIVVNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPLLNNTREDHGEGKELGGQNDGEAGEEDESPFEFRALEVALEAICSFLAARTTELETSAYPALDELTSKISSRNLDRVRKLKSGMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA-SPLSGSAAASWFISSPNISSKISRASRASMATIRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWNDNHGYMFKWVVSLSGIASAL 372
M RD V P+ P GLKK A R WI +DS+G+DTILDVDKYAIMHRV IHARDLRILDPLLSYPSTILGRE AIV+NLEHIKAIITA+EVLLRDP DDNVIPVVEELRRRLP +N RE G+GKELG Q D EAGEEDESPFEFRALEVALEAICSFLAARTTELET+AYPALDELTSKISSRNLDRVRKLKS MTRLTARVQKVRDELEQLLDDDDDMADLYLSRKL+ A SP+SGS AA+W+ +SP I SKISRASRAS+AT+RGDE+DVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLS+YS+VA IFGMNIPYTWN++HGY+FKWVV ++G+ A+
Sbjct: 1 MARDGCIV-PADPQAGLKKKAAGSRSWILMDSTGEDTILDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITADEVLLRDPLDDNVIPVVEELRRRLPPINAIREGQGDGKELGAQPDVEAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASSPVSGSGAANWYPASPTIGSKISRASRASVATVRGDEDDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSMVAGIFGMNIPYTWNEHHGYVFKWVVIVTGVFCAV 374
HSP 2 Score: 58.151 bits (139), Expect = 1.215e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
Query: 370 SALREYIDDTEDYINIQLDNHRNQLIQV 397
+ LREYIDDTEDYINIQLDNHRNQLIQ+
Sbjct: 297 TTLREYIDDTEDYINIQLDNHRNQLIQL 324
| Match Name | Stats | Description |
|---|---|---|
| A0A1U7YKM7 | E-Value: 7.388e-6, PID: 81.07 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A1S3YPQ4 | E-Value: 7.388e-6, PID: 81.07 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A1S3YPV5 | E-Value: 7.277e-6, PID: 80.85 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A5N6PXH9 | E-Value: 1.410e-6, PID: 78.68 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A2R6RUX5 | E-Value: 1.519e-6, PID: 84.00 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A7J0EES7 | E-Value: 1.519e-6, PID: 83.73 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A6P6A866 | E-Value: 4.411e-5, PID: 77.99 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A6J1H4U5 | E-Value: 1.875e-6, PID: 80.64 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A6J1KWM0 | E-Value: 1.960e-6, PID: 80.64 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
| A0A5B6ZW70 | E-Value: 1.215e-6, PID: 83.47 | Magnesium transporter {ECO:0000256|RuleBase:RU3660... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |