Resource Type:
Polypeptide
Name:
DCAR_015988
Identifier:
DCAR_015988.mRNA-protein
Sequence:
MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYS
EISAFSEFTDDNSYSDSPSPLCWPAMKSPNQPVLRRLGMRQNKLGMDDTL
ENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASV
YGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEI
MTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRS
GSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKA
AMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDY
LLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDI
DRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILES
YSRVLEGLAFNIVAWVEDVLFIDKSTKNDFMEPR*
Sequence Length:
485
Sequence Checksum:
f31faa462b67e53c3b9efb7090a574e5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_015988, derives from mRNA, DCAR_015988. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HZA5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 718.768 bits (1854), Expect = 0.000e+0
Identity = 351/479 (73.28%), Postives = 405/479 (84.55%), Query Frame = 0
Match: A0A2G9HZA5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 718.768 bits (1854), Expect = 0.000e+0
Identity = 351/479 (73.28%), Postives = 405/479 (84.55%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSPNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIIT-QPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTKN 478
M+S ++S+EN DLGYQ SP+SVDQ+D+S TE YS DSF Y RT SE SAFSE TDDNS+ + SPL W +KSP + L RLGM+Q+K G+DD E +D E+E+MKERFSKLLLGEDMSGSG+GVCTAVT+SNAITNLYASV+GQH +LEPLH EKKLMWKREMNCLLSVCDYIVEF P Q LK+GT +E+MT+ PRSDI INLPALRKLDAML+++L+SF DT+FWYAEQGS+SGNS RSGSF RI+ Q QR E KWWLPVPCVP GLSEKS+KHL+ +R+ ANQI KAAMAIN+ ILAEM IP +YM+SLPKSGK SVG+TIYRY+ S KFSPD++L+ LNI SEHEALELAD+VEASMYTWRRK + SKSSW+MVKDLMSDIDR+DKN VLAERAE +LF LKQRYPELSQTTLDTSKI+YNKDVGQA+LESYSRVLEGLAFNIVAW+EDVLF+DK+TKN
Sbjct: 1 MDSISNSEENYDLGYQPSPSSVDQADNSLTEMTSYSITSGDSFAYCRTSSEASAFSEHTDDNSFPEVASPLSWRGLKSPARAALSRLGMKQHKHGLDD-----EIMDLELELMKERFSKLLLGEDMSGSGRGVCTAVTISNAITNLYASVFGQHQRLEPLHPEKKLMWKREMNCLLSVCDYIVEFRPTLQTLKEGTTLEVMTSRPRSDIYINLPALRKLDAMLLDILDSFQDTDFWYAEQGSMSGNSTRSGSFRRIVQPQSQRTEEKWWLPVPCVPSDGLSEKSKKHLQQKRDCANQIHKAAMAINNGILAEMQIPESYMASLPKSGKASVGETIYRYM--YSAEKFSPDHVLDFLNIISEHEALELADKVEASMYTWRRKIGMAHSKSSWDMVKDLMSDIDRSDKNHVLAERAETLLFCLKQRYPELSQTTLDTSKIQYNKDVGQAVLESYSRVLEGLAFNIVAWIEDVLFVDKTTKN 472
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U5Q4 ((rop guanine nucleotide exchange factor 3 isoform X2 {ECO:0000313|RefSeq:XP_011092304.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 353/478 (73.85%), Postives = 399/478 (83.47%), Query Frame = 0
Match: A0A6I9U5Q4 ((rop guanine nucleotide exchange factor 3 isoform X2 {ECO:0000313|RefSeq:XP_011092304.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 353/478 (73.85%), Postives = 399/478 (83.47%), Query Frame = 0
Query: 3 SKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSPNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIIT--QPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTKN 478
S + SDEN +LGYQ SP+SVDQ+D S T+T S + ADSF Y RT SE SAFSE TD S SPS W +KSP + L RLGMRQ+K GMD +E +D E+E+MKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYASV+GQH +LEPLH EKKLMWKREMNCLLSVCDYIVEF P Q LKDGT +E+MT+ PRSDI INLPALRKLDAML+++L+SF TEFWYAEQGS+SGNS RSGSF RI+ QPQRKE KWWLPVPCV P GLSEKS+KHL+ +R+ A QI KAAMAINS+ILAEM IP +YM+SLPKSGK SVG+TIYRY+ + KFSPDYLL+ LNISSEHEALELAD+VEASMYTWRRK C+ SKSSW+MVKDLMSD+DR DKN VLAERAE +LF LKQRYPELSQTTLDTSKI+YNKDVGQA+LESYSRVLE LAFNIVAW+EDVLF+DK+ KN
Sbjct: 4 STSTSDENYELGYQPSPSSVDQTDQSLTDTTSCSILSADSFAYCRTNSEASAFSEHTDSFSEIASPS---WRGLKSPARAALSRLGMRQHKHGMD-----EEVMDLELELMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYASVFGQHQRLEPLHPEKKLMWKREMNCLLSVCDYIVEFSPTLQTLKDGTTLEVMTSRPRSDIYINLPALRKLDAMLLDILDSFQVTEFWYAEQGSMSGNSTRSGSFRRIVVQPQPQRKEEKWWLPVPCVSPDGLSEKSKKHLQQKRDCAYQIHKAAMAINSAILAEMQIPESYMASLPKSGKASVGETIYRYMY--NAEKFSPDYLLDSLNISSEHEALELADKVEASMYTWRRKMCMTHSKSSWDMVKDLMSDVDRTDKNHVLAERAETLLFCLKQRYPELSQTTLDTSKIQYNKDVGQAVLESYSRVLESLAFNIVAWIEDVLFVDKTMKN 471
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3N7HQ86 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 348/476 (73.11%), Postives = 403/476 (84.66%), Query Frame = 0
Match: A0A3N7HQ86 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 348/476 (73.11%), Postives = 403/476 (84.66%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKS--PNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDK 474
M++ + DE D GYQ SP+S+DQ+D ET VYS + DSF + RTYSE SAFS+ DDNSYS PSP WP KS +Q +LRRL M+Q K DD L++QE VD E+EMMKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYA+V+GQ+L+LEPL EKK MWKREM+CLLSVCDYIVEFIP SQNL+DGTV+E+M + PR DI+INLPALRKLDAML+EVL+SF DTEFWYAEQGS+S NS SGSF R+I QRKE KWW+PVPCVP GLSEKSRKHLRH+R+ A QI KA+MAINSSILAEM+IP TY++SLPKSG+ S+GDTIYRYL + +KFSP +LL+ LN++SEHEAL+LADRVEASMYTWRRKACL+ SKSSWNMVKDLMSDIDR DKN +LAERAE +LF LKQRYPELSQT+LDT KI+YN+DVGQAILESYSRVLEGLAFNIVAW+EDVLF+D+
Sbjct: 1 MDNSSSFDEVSDPGYQPSPSSLDQNDHPAVETPVYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQHQAMLRRLEMKQQKQVADDKLDDQESVDLELEMMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFIPKSQNLQDGTVLEVMESRPRLDIHINLPALRKLDAMLMEVLDSFQDTEFWYAEQGSMSSNSTLSGSFRRVIV--QRKEEKWWVPVPCVPSGGLSEKSRKHLRHKRDCAYQIHKASMAINSSILAEMEIPETYIASLPKSGRASLGDTIYRYLY--TADKFSPGHLLDCLNLASEHEALQLADRVEASMYTWRRKACLSHSKSSWNMVKDLMSDIDRTDKNHILAERAETLLFCLKQRYPELSQTSLDTCKIQYNQDVGQAILESYSRVLEGLAFNIVAWIEDVLFVDR 472
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5Q7D6 ((Rop guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:TKS06188.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 345/479 (72.03%), Postives = 402/479 (83.92%), Query Frame = 0
Match: A0A4U5Q7D6 ((Rop guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:TKS06188.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 345/479 (72.03%), Postives = 402/479 (83.92%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKS--PNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTK 477
M++ ++ DE + YQ SP+S+DQ+D S ET VYS + DSF + RTYSE SAFS+ DDNSYS PSP WP KS NQ + RL M+Q K +DD L++QE VD ++E MKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYA+V+GQ+L+LEPL EKK MWKREM+CLLS+CDYIVEFIP S NL+DGT +E+M + PRSDI INLPAL KLDAMLIEVL+SF D EFWYAEQGS+S NS RSGSF R+I QRKE KWW+PVPCVPP GLSEKSRKHLRH+R+ A QI KAAMAINSSIL EM+IP++YM+SLPKSG+ S+GDTIYRYL C+ + FSPD+LL+ LN++SEHEALELADRVEASMYTWRRKACL+ SKSSW++VKDLMSDIDR DKN VLAERAE +LF LKQRYPELSQT+LDT KI+YN+DVGQA LESYSRVLEGLAFNIVAW+EDVLF+DKS +
Sbjct: 1 MDNSSNFDEISEPSYQPSPSSLDQNDQSTVETPVYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQNQAMFGRLEMKQQKQVVDDKLDDQESVDLQLETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSLCDYIVEFIPKSHNLRDGTALEVMESRPRSDIYINLPALTKLDAMLIEVLDSFQDREFWYAEQGSMSSNSTRSGSFRRVII--QRKEEKWWVPVPCVPPDGLSEKSRKHLRHKRDCAYQIHKAAMAINSSILTEMEIPHSYMASLPKSGRASLGDTIYRYL--CTADGFSPDHLLDCLNLASEHEALELADRVEASMYTWRRKACLSHSKSSWDLVKDLMSDIDRTDKNHVLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGQATLESYSRVLEGLAFNIVAWIEDVLFVDKSAR 475
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3G1VCH5 ((Guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:AYK03154.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 348/480 (72.50%), Postives = 406/480 (84.58%), Query Frame = 0
Match: A0A3G1VCH5 ((Guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:AYK03154.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 348/480 (72.50%), Postives = 406/480 (84.58%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSPNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPA-SQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTKND 479
M++ ++SDEN DLGYQ SP+SVDQ+D+SP+ T + + DSF Y RT SE+S S+ TDD S +PSPL WP K+P +L RLG+ Q + D ++ EPVD E+EMM+ERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYASV+G HLKLEPL+ E KLMWKREMNCLLSVCDY+VEFIP SQNL DGT VE+M + PRSDI INLPALRKLD+ML+++L+SF +TEFWYAEQGS+SGNS R+GSF RII PQRKE KWWLPVPCVPP GLSEKSRKHLR +R+ ANQI KAAMAIN +IL EM+IP++YM+SLPKSGK S+GDTIYRY+ C KFSPDYLL+ LNISSEHEALELADRVE SMYTWRRKA ++ SKSSW+MVKD MSDIDR+DKN VLAERAE++LF LK+RYPELSQT+LDT KI+YNKDVGQAILESYSRVLEGLAFN VAW++DVLF+DKSTKN+
Sbjct: 1 MDNLSNSDENYDLGYQASPSSVDQTDNSPSGTTGFWTMSTDSFTYCRTNSEMSGCSQPTDDQSSPGTPSPL-WPLRKTP---ILSRLGIGQQTSRLGDKPDDNEPVDLELEMMRERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYASVFGHHLKLEPLNPENKLMWKREMNCLLSVCDYVVEFIPTTSQNLHDGTAVEVMESRPRSDIYINLPALRKLDSMLVDILDSFQETEFWYAEQGSLSGNSTRTGSFRRII-HPQRKEEKWWLPVPCVPPDGLSEKSRKHLRKKRDCANQIHKAAMAINGTILDEMEIPDSYMASLPKSGKASLGDTIYRYM--CVAEKFSPDYLLDCLNISSEHEALELADRVEESMYTWRRKAFMSHSKSSWDMVKDFMSDIDRSDKNHVLAERAEVLLFCLKRRYPELSQTSLDTCKIQYNKDVGQAILESYSRVLEGLAFNTVAWIDDVLFVDKSTKNN 473
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5F2R6 ((PRONE domain containing protein {ECO:0000313|EMBL:PON92083.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 345/486 (70.99%), Postives = 414/486 (85.19%), Query Frame = 0
Match: A0A2P5F2R6 ((PRONE domain containing protein {ECO:0000313|EMBL:PON92083.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 345/486 (70.99%), Postives = 414/486 (85.19%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSP---NQPVLRRLGMRQNKLGMDD-TLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPA-SQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSG---SFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTKN 478
M + ++SDEN DLGYQ SP+S+DQ+D S TET YS DSF Y RT SE SAFSE DD SYS PSP CWP +KS NQ VL RLGM+Q+K +DD L++QE +D E+E+MKERF+KLLLGEDMSGSGKGVCTAVT+SN+ITNLYA+V+GQ+L+LEPL EK+ MWKREM+CLLSVCDYIVEFIP SQNL+DGT +E+MT+ PR+DI INLPALRKLD MLIE+L+SF DTEFWYAEQGS+S NS RSG SF RI QRK+ KWWLPVPCVPP GLSEK+RKHLRH+R+ ANQI KAAMAINSSILAEM+IP+TYM++LPKSGK +GD+IYRY+ + +KFSP++LL+ LNI+SEHEALELADRVEASMYTWRRKAC++ SKSSW+MVKDLMSD DR+DKN ++AERA+ +LF+LKQ+YPELSQT+LDT KI+YN+DVGQA+LESYSRVLEGLAFNIVAW+EDV+F+D+S ++
Sbjct: 1 MNNLSNSDENYDLGYQPSPSSLDQNDQSTTETPGYSTFSGDSFAYCRTNSETSAFSEPIDDQSYSSEPSPSCWPGLKSGGVHNQAVLTRLGMKQHKNLVDDHKLDDQEALDSELELMKERFAKLLLGEDMSGSGKGVCTAVTISNSITNLYATVFGQNLRLEPLKPEKRAMWKREMDCLLSVCDYIVEFIPTMSQNLRDGTALEVMTSRPRADIYINLPALRKLDTMLIEILDSFRDTEFWYAEQGSMSSNSGRSGPSGSFRRIF---QRKDEKWWLPVPCVPPEGLSEKARKHLRHKRDCANQIHKAAMAINSSILAEMEIPDTYMATLPKSGKACLGDSIYRYMY--TADKFSPEHLLDCLNIASEHEALELADRVEASMYTWRRKACMSHSKSSWDMVKDLMSDTDRSDKNHIMAERADSLLFSLKQKYPELSQTSLDTCKIQYNRDVGQAVLESYSRVLEGLAFNIVAWIEDVIFVDRSVRS 481
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2F8A3 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 346/480 (72.08%), Postives = 402/480 (83.75%), Query Frame = 0
Match: A0A6M2F8A3 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 346/480 (72.08%), Postives = 402/480 (83.75%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSPNQ--PVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTKN 478
M++ + DE D GYQ SP+S+DQ+D ET YS + DSF + RTYSE SAFS+ DDNSYS PSP WP KS Q +LRRL M+Q K +DD L++QE VD E+EMMKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYA+V+GQ+L+LEPL EKK MWKREM+CLLSVCDYIVEFI SQNL+DGT +E+M + R DI+INLPALRKLDAML+EVL+SF D EFWYAEQGS+S NS RSGSF R+I QR+E KWW+PVPCVPP GLSEKSRKHLRH+R+ A QI KAAMAINSSIL EM+IP++YM+SLPKSG+ S+GDTIYRYL C+ + FSPD+LL+ LN++SEHEALELADRVEASMYTWRRKACL+ SKSSW++VKDLMSDIDR DKN VLAERAE +LF LKQRYPELSQT+LDT KI+YN+DVGQA LESYSRVLEGLAFNIVAW+EDVLF+DKS +
Sbjct: 1 MDNSSSFDEVSDPGYQPSPSSLDQNDQPAVETPGYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQHLAMLRRLEMKQQKQVVDDKLDDQESVDLELEMMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFISKSQNLQDGTALEVMESRLRLDIHINLPALRKLDAMLMEVLDSFQDREFWYAEQGSMSSNSTRSGSFRRVII--QRQEEKWWVPVPCVPPDGLSEKSRKHLRHKRDCAYQIHKAAMAINSSILTEMEIPHSYMASLPKSGRASLGDTIYRYL--CTADGFSPDHLLDCLNLASEHEALELADRVEASMYTWRRKACLSHSKSSWDLVKDLMSDIDRTDKNHVLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGQATLESYSRVLEGLAFNIVAWIEDVLFVDKSVRT 476
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2BJJ7 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 346/479 (72.23%), Postives = 401/479 (83.72%), Query Frame = 0
Match: A0A2K2BJJ7 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 346/479 (72.23%), Postives = 401/479 (83.72%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKS--PNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTK 477
M++ ++ DE + YQ SP+S+DQ+D S ET VYS + DSF + RTYSE SAFS+ DDNSYS PSP WP KS NQ + RL M+Q K +DD L++QE VD E+E MKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYA+V+GQ+L+LEPL EKK MWKREM+CLLSVCDYIVEFIP SQNL+DGT +E+M + PRSDI INLPAL KLDAMLIEVL+SF D EFWYAEQGS+S NS RSGSF R++ QRKE KWW+PVPCVP GLSEKSRKHLRH+R+ A QI KAAMAINSSIL EM+IP++YM+SLPKSG+ S+GDTIYRYL C+ + FSPD+LL+ LN++SEHEALELADRVEASMYTWRRKACL+ SKSSW+MVKDLMSDIDR DKN VLAERAE +LF LKQRYPELSQT+LDT KI+YN+DVGQA LESYSRVLEGLAFNIVAW+EDVLF+D S +
Sbjct: 1 MDNSSNFDEISEPSYQPSPSSLDQNDQSTVETPVYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQNQAMFGRLEMKQQKQVVDDKLDDQESVDLELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFIPKSQNLRDGTALEVMESRPRSDIYINLPALTKLDAMLIEVLDSFQDREFWYAEQGSMSSNSTRSGSFRRVVI--QRKEEKWWVPVPCVPHDGLSEKSRKHLRHKRDCAYQIHKAAMAINSSILTEMEIPHSYMASLPKSGRASLGDTIYRYL--CTADGFSPDHLLDCLNLASEHEALELADRVEASMYTWRRKACLSHSKSSWDMVKDLMSDIDRTDKNHVLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGQATLESYSRVLEGLAFNIVAWIEDVLFVDNSVR 475
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QY06 ((Rop guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:TKS14537.1}))
HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0
Identity = 346/476 (72.69%), Postives = 400/476 (84.03%), Query Frame = 0
Match: A0A4U5QY06 ((Rop guanine nucleotide exchange factor 3 {ECO:0000313|EMBL:TKS14537.1}))
HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0
Identity = 346/476 (72.69%), Postives = 400/476 (84.03%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKS--PNQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDK 474
M++ + DE D GYQ SP+S+DQ+D ET YS + DSF + RTYSE SAFS+ DDNSYS PSP WP KS +Q +LRRL M+Q K DD L++QE VD E+EMMKERFSKLLLGEDMSGSGKGVCTAVT+SNAITNLYA+V+GQ+L+LEPL EKK MWKREM+CLLSVCDYIVEFIP SQNL+DGT +E+M + PR DI+INLPALRKLDAML+EVL+SF D EFWYAEQGS+S S SGSF R+I QRKE KWW+PVPCVP GLSEKSRKHLRH+R+ A QI KA+MAINSSILAEM+IP TY++SLPKSG+ S+GDTIYRYL + +KFSP +LL+ LN++SEHEALELADRVEASMYTWRRKACL+ SKSSWNMVKDLMSDIDR DKN +LAERAE +LF LKQRYPELSQT+LDTSKI+YN+DVGQAILESYSRVLEGLAFNIVAW+EDVLF+D+
Sbjct: 1 MDNSSSFDEVSDPGYQPSPSSLDQNDQPAVETPGYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQHQAMLRRLEMKQQKQVADDKLDDQESVDLELEMMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFIPKSQNLQDGTALEVMESRPRLDIHINLPALRKLDAMLMEVLDSFQDREFWYAEQGSMSSKSTLSGSFRRVIV--QRKEEKWWVPVPCVPSGGLSEKSRKHLRHKRDCAYQIHKASMAINSSILAEMEIPETYIASLPKSGRASLGDTIYRYLY--TADKFSPGHLLDCLNLASEHEALELADRVEASMYTWRRKACLSHSKSSWNMVKDLMSDIDRTDKNHILAERAETLLFCLKQRYPELSQTSLDTSKIQYNQDVGQAILESYSRVLEGLAFNIVAWIEDVLFVDR 472
BLAST of DCAR_015988 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VUE5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 344/479 (71.82%), Postives = 401/479 (83.72%), Query Frame = 0
Match: A0A2C9VUE5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 344/479 (71.82%), Postives = 401/479 (83.72%), Query Frame = 0
Query: 1 MESKADSDENRDLGYQESPASVDQSDDSPTETAVYSAIRADSFWYRRTYSEISAFSEFTDDNSYSDSPSPLCWPAMKSP--NQPVLRRLGMRQNKLGMDDTLENQEPVDKEVEMMKERFSKLLLGEDMSGSGKGVCTAVTLSNAITNLYASVYGQHLKLEPLHSEKKLMWKREMNCLLSVCDYIVEFIPASQNLKDGTVVEIMTNTPRSDININLPALRKLDAMLIEVLESFTDTEFWYAEQGSISGNSVRSGSFTRIITQPQRKEGKWWLPVPCVPPRGLSEKSRKHLRHQRNSANQILKAAMAINSSILAEMDIPNTYMSSLPKSGKESVGDTIYRYLSQCSTNKFSPDYLLNHLNISSEHEALELADRVEASMYTWRRKACLNPSKSSWNMVKDLMSDIDRNDKNTVLAERAEIVLFTLKQRYPELSQTTLDTSKIEYNKDVGQAILESYSRVLEGLAFNIVAWVEDVLFIDKSTK 477
M++ ++ D+N D GY SP+S+DQ TET +S DSF +RR YS+ SAFS+ TDDNSYS PSP W +S NQPVL RL M+Q K +DD E VD E+EMMKERF+KLLLGEDMSGSGKGVCTAVT+SN+ITNLYA+V+GQ+L+LEPL+ EKK MWKREM+CLLSVCDYIVEF+P SQNLK+G+ +E M PRSDI INLPALRKLDAMLIE+L+ F +TEFWYAEQGS+S NS RSGSF RII QRKE KWW+PVPCVPP G+SEKSRKHLRH+R+ ANQI KAAMAINSS+LAEMDIP+TYM+SLPKSG+ S+GD IYRY+S +T+KFSPD++LN LN++SEHEALELADRVEASMYTWRRKAC+N SKSSW MVKDLMSDIDR DKN VLAERAE +LF LKQRYPELSQT+LDT KI+YN+DVG+AILESYSRVLEGLAFNIVAW+EDV F+DKS +
Sbjct: 1 MDTSSNYDDNSDQGYHPSPSSLDQ-----TETPRFSTTSGDSFLFRRVYSQTSAFSDPTDDNSYSSEPSPCHWSENRSSPHNQPVLGRLAMKQRKQIIDD----HESVDTELEMMKERFAKLLLGEDMSGSGKGVCTAVTISNSITNLYATVFGQNLRLEPLNPEKKAMWKREMDCLLSVCDYIVEFVPKSQNLKNGSALEFMETIPRSDIYINLPALRKLDAMLIEILDGFQETEFWYAEQGSMSSNSTRSGSFRRIIV--QRKEEKWWVPVPCVPPGGVSEKSRKHLRHKRDCANQIHKAAMAINSSVLAEMDIPDTYMASLPKSGRASLGDIIYRYMS--ATDKFSPDHVLNCLNVASEHEALELADRVEASMYTWRRKACMNHSKSSWEMVKDLMSDIDRTDKNHVLAERAESLLFCLKQRYPELSQTSLDTCKIQYNRDVGKAILESYSRVLEGLAFNIVAWIEDVQFVDKSVR 466
| Match Name | Stats | Description |
|---|---|---|
| A0A2G9HZA5 | E-Value: 0.000e+0, PID: 73.28 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A6I9U5Q4 | E-Value: 0.000e+0, PID: 73.85 | (rop guanine nucleotide exchange factor 3 isoform ... [more] |
| A0A3N7HQ86 | E-Value: 0.000e+0, PID: 73.11 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A4U5Q7D6 | E-Value: 0.000e+0, PID: 72.03 | (Rop guanine nucleotide exchange factor 3 {ECO:000... [more] |
| A0A3G1VCH5 | E-Value: 0.000e+0, PID: 72.50 | (Guanine nucleotide exchange factor 3 {ECO:0000313... [more] |
| A0A2P5F2R6 | E-Value: 0.000e+0, PID: 70.99 | (PRONE domain containing protein {ECO:0000313|EMBL... [more] |
| A0A6M2F8A3 | E-Value: 0.000e+0, PID: 72.08 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A2K2BJJ7 | E-Value: 0.000e+0, PID: 72.23 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A4U5QY06 | E-Value: 0.000e+0, PID: 72.69 | (Rop guanine nucleotide exchange factor 3 {ECO:000... [more] |
| A0A2C9VUE5 | E-Value: 0.000e+0, PID: 71.82 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |