Resource Type:
Polypeptide
Name:
DCAR_004968
Identifier:
DCAR_004968.mRNA-protein
Sequence:
MDSTETLIPPPIPTSPDTNPNTTLAEHENTTRTRRKSRWDPVTEPNNPEK
KKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQA
NVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALII
KRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEK
ETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAA
AGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQY
ACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELG
GSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIV
PKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQT
KGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPA
PPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYG
GYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTATPDQNLANAEPQQIY
SAGMQSQSNTSASNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPP
AVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAE
MK*
Sequence Length:
703
Sequence Checksum:
971121d930f21ec04f0c5dd19f831f8d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_004968, derives from mRNA, DCAR_004968. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HX30 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5957403.1}))
HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0
Identity = 503/699 (71.96%), Postives = 567/699 (81.12%), Query Frame = 0
Match: A0A7J7HX30 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5957403.1}))
HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0
Identity = 503/699 (71.96%), Postives = 567/699 (81.12%), Query Frame = 0
Query: 18 TNPNTTLAEHENTTRTRRKSRWDPVTE---PNNPEKKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPP--PPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTA---TPDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
T+ + + E E R RR+SRWDP + N KK+KSRW+++EPK FQLPDFMKDF GMD DP +QALN+RLLEIS++LQ+ + LDDRP+ ARSPSPEP+YDN+GIRINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQKRDLKFD ++NEDLHVLVEA+ QESLDAAAGMVE LL PVDEGLNEHKRQQL+ELAALNGTIR+DE+CRLCGE GHRQYACPSR+STFKSEVLCK CGDGGHPTIDCP+KGT GKKMDDEYQNFLAELGG+ PES TK + LAIMGS +SGSNP PWA++ AGS G+S HPGLGS + K+GKEID TNLYIGYLPPT++DD LIRLF PFG+I MAKVIKDR+TG +KGYGFVK+SDV QANQAT+SMNG+RL+GR IAVRVAG PQPVVPPGPPAPP Y PN GGYPSQQ SGGSLG PPGSYMGPP + PPPP PP PGSNMY P QGQ MPPY + YP P Q A + Q++ ++E QQ Y G+QSQSN S +NNIYGNS GM PN QPTY PSS GY SYY V PPPP S+A+QQ+FAS WA PP PPS+ SA+Q+QQ +YG DPEYEKFMAEMK
Sbjct: 107 TDRDGSGGEEETNRRRRRRSRWDPPADGEVQNGEAKKRKSRWADDEPKPVFQLPDFMKDFAGGMDIDPEIQALNARLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNIGIRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLGQKRDLKFDPAENEDLHVLVEAETQESLDAAAGMVEMLLHPVDEGLNEHKRQQLRELAALNGTIREDEYCRLCGEPGHRQYACPSRMSTFKSEVLCKICGDGGHPTIDCPVKGTVGKKMDDEYQNFLAELGGTGPESLTKQNPALAIMGSNSSGSNP-PWASSGGAGSTGNSSHPGLGSNLTKVGKEIDDTNLYIGYLPPTLDDDALIRLFSPFGEIAMAKVIKDRVTGLSKGYGFVKYSDVNQANQATSSMNGYRLDGRVIAVRVAGKPPQPVVPPGPPAPPMSTYLPPNQAVGGYPSQQNTSGGSLGSMPPGSYMGPPVPWGPQAPPPPPYAPYTPPVPGSNMYNPVQGQPMPPYNIPYPQPPQAAISGSVSQSMPSSEAQQNYITGVQSQSNASVASAQSGANNIYGNSMMGMPPNPQPTYHPSSLGYPSYYAVAPPPPPGSHSTADQQNFASESWASKPPAPPSISSAEQSQQASYGVDPEYEKFMAEMK 804
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D1A3 ((Uncharacterized protein {ECO:0000313|EMBL:THF95827.1}))
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 497/695 (71.51%), Postives = 563/695 (81.01%), Query Frame = 0
Match: A0A4S4D1A3 ((Uncharacterized protein {ECO:0000313|EMBL:THF95827.1}))
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 497/695 (71.51%), Postives = 563/695 (81.01%), Query Frame = 0
Query: 18 TNPNTTLAEHENTTRTRRKSRWDPVTE---PNNPEKKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPP--PPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTA---TPDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFM 698
T+ + + E E R RR+SRWDP + N KK+KSRW+++EPK FQLPDFMKDF GMD DP +QALN+RLLEIS++LQ+ + LDDRP+ ARSPSPEP+YDN+GIRINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQKRDLKFD ++NEDLHVLVEA+ QESLDAAAGMVE LL PVDEGLNEHKRQQL+ELAALNGTIR+DE+CRLCGE GHRQYACPSR+STFKSEVLCK CGDGGHPTIDCP+KGT GKKMDDEYQNFLAELGG+ PES TK + LAIMGS +SGSNP PWA++ AGS G+S HPGLGS + K+GKEID TNLYIGYLPPT++DD LIRLF PFG+I MAKVIKDR+TG +KGYGFVK+SDV QANQAT+SMNG+RL+GR IAVRVAG PQPVVPPGPPAPP Y PN GGYPSQQ SGGSLG PPGSYMGPP + PPPP PP PGSNMY P QGQ MPPY + YP P Q A + Q++ ++E QQ Y G+QSQSN S +NNIYGNS GM PNSQPTY PSS GY SYY V PPPP S+A+QQ+FAS WA PP PPS+ SA+Q+QQ +YG DPE+E F+
Sbjct: 107 TDRDGSGGEEETNRRRRRRSRWDPPADGEVQNGEAKKRKSRWADDEPKPVFQLPDFMKDFAGGMDIDPEIQALNARLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNIGIRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLGQKRDLKFDPAENEDLHVLVEAETQESLDAAAGMVEMLLHPVDEGLNEHKRQQLRELAALNGTIREDEYCRLCGEPGHRQYACPSRMSTFKSEVLCKICGDGGHPTIDCPVKGTVGKKMDDEYQNFLAELGGTGPESLTKQNPALAIMGSNSSGSNP-PWASSGGAGSTGNSSHPGLGSNLTKVGKEIDDTNLYIGYLPPTLDDDALIRLFSPFGEIAMAKVIKDRVTGLSKGYGFVKYSDVNQANQATSSMNGYRLDGRVIAVRVAGKPPQPVVPPGPPAPPMSTYLPPNQAVGGYPSQQNTSGGSLGSMPPGSYMGPPVPWGPQAPPPPPYAPYTPPVPGSNMYNPVQGQPMPPYNIPYPQPPQAAISGSVSQSMPSSEAQQNYITGVQSQSNASVASAQSGANNIYGNSMMGMPPNSQPTYHPSSLGYPSYYAVAPPPPPGSHSTADQQNFASESWASKPPAPPSISSAEQSQQASYGVDPEHEVFL 800
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124SD16 ((K Homology domain-containing protein {ECO:0000313|EMBL:KVH95527.1}))
HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 509/707 (71.99%), Postives = 569/707 (80.48%), Query Frame = 0
Match: A0A124SD16 ((K Homology domain-containing protein {ECO:0000313|EMBL:KVH95527.1}))
HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 509/707 (71.99%), Postives = 569/707 (80.48%), Query Frame = 0
Query: 14 TSPDTNPNTTLAEHENTTRTRRKSRWDPVTEPN---NPEKKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWA-NNSTAGSNGSSLHPGLGSIVPK--------IGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPW---RPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTATPDQNLANAEPQQIYSAGMQSQSNT---SASNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
TS T N E + T++ RR+SRWDP E + N KK+KSRW+++EPK FQLPDFMKDFT GMD DP +QALN+RL+EIS+ILQ+ QLDDRP+ ARSPSP+P+YDNMG RINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFD S+NEDLHVLVEA+ QE LDAAAGMVEKLL PVDEGLNEHKRQQL+ELAALNGTIRDDE+CRLCGE GHRQ+ACPSR+STFKS+VLCK CGDGGHPTIDCP+KGTAGKKMDDEYQNFLAELGG++PE TK STPL IMGS NS N PWA +N++ G+ G+S HPGLGS K IGKEID TNLYIGYLPPT+EDD LIRLF PFG+IVMAKVIKDR+TG +KGYGFVK+SD+ QANQA ASMNG+RL+GR IAVRVAG PQP VPPGPPA P P YPG N GGYPSQQM SGG +G APPGSY+ P PW PPPP PPPPPPGSNMY +QGQ MP Y +QYPP P QN+A+ E QQ YSAG+ SQ+N S S+N+YGNS +G+ PN+Q YP S Y+SYY V PPPP QS EQQSFASAP + P PP V SA+QNQQT YG DPEYEKFMAEMK
Sbjct: 77 TSATTEKNNPTVEEDTTSKRRRRSRWDPPAEGDADQNGGKKRKSRWADDEPKPVFQLPDFMKDFTGGMDMDPEIQALNARLMEISRILQSGQQLDDRPEGARSPSPDPIYDNMGTRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDPSENEDLHVLVEAETQEGLDAAAGMVEKLLHPVDEGLNEHKRQQLRELAALNGTIRDDEYCRLCGEPGHRQFACPSRMSTFKSDVLCKICGDGGHPTIDCPVKGTAGKKMDDEYQNFLAELGGTLPEGMTKQSTPLPIMGSSNSSGNNPPWASSNNSNGNTGTSAHPGLGSNAAKIGTGFGLGIGKEIDDTNLYIGYLPPTLEDDALIRLFSPFGEIVMAKVIKDRVTGLSKGYGFVKYSDIAQANQAIASMNGYRLDGRVIAVRVAGKPPQPTVPPGPPAAPVPAYPGANQTLGGYPSQQMASGGPIGSAPPGSYISAPVPWGPPPPPPPYAAYAPPPPPPGSNMYSSFQGQQMPSYGVQYPP------PPQNIASTEAQQSYSAGIHSQNNAPGQSPSSNVYGNSMSGITPNNQSAYPSPSMSYSSYYSVPPPPPPATQSVVEQQSFASAP-WSSNPPPPPVSSAEQNQQTAYGTDPEYEKFMAEMK 776
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YIQ2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8380529.1}))
HSP 1 Score: 884.019 bits (2283), Expect = 0.000e+0
Identity = 480/703 (68.28%), Postives = 546/703 (77.67%), Query Frame = 0
Match: A0A834YIQ2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8380529.1}))
HSP 1 Score: 884.019 bits (2283), Expect = 0.000e+0
Identity = 480/703 (68.28%), Postives = 546/703 (77.67%), Query Frame = 0
Query: 14 TSPDTNPNTTLAEHENTTRTRRKSRWDPVTEPNNPE-------KKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTA---TPDQNLANAEPQQIYSAGMQSQSNT---SASNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQ-QSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
T T + + E E +R RR+SRWDP + N +K+KSRW+++EPK FQLPDFMKDFT G+D DP +Q+LN RLLEIS++LQ+ + LDDRP+ ARSPSPEPLYDNMGIRINTRE+RARERLNRERQEII+ +IKRNPAFKPPADYRPPKL+KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR QKRDLK D S+NEDLHVLVEAD QE+L+AAAGMVEKLLRPVDEGLNEHKRQQL+ELAALNGTIRDDEFCRLCGE GHRQYACP+R STFKS+VLCK CGDGGHPTIDCP+KGT GKKMDDEYQNFLAELGGSVP+S TK + L I+GS +S SNP PWA+ + AG GS+ GLGS K GK+ D TNLYIGYLPP ++DD LI+LF PFGDIVMAKVIKDR++G +KGYGFVK+SD+ QANQA SMNG+RL GR IAVRVAG PQP VPPGPP P P YPG N GGYPSQQ GG G AP GSYMG P PW PP P PPPPGS+MY P QGQ + PY +QY P Q P Q+ ++E QQ G++SQ+NT S +NN YGNS AGM PN+Q YPPSS GY SYYGV PPP +PQS + + PWA N P+PP V SA +QTT+GAD EYEKFMAEMK
Sbjct: 160 THSGTEKDYSGGEEETNSRRRRRSRWDPPADSENQNGDSGSGARKRKSRWADDEPKPLFQLPDFMKDFTGGIDIDPEIQSLNIRLLEISRMLQSGLPLDDRPEGARSPSPEPLYDNMGIRINTREYRARERLNRERQEIISQMIKRNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLQQKRDLKPDPSENEDLHVLVEADTQEALEAAAGMVEKLLRPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEPGHRQYACPARTSTFKSDVLCKICGDGGHPTIDCPMKGTTGKKMDDEYQNFLAELGGSVPDSLTKQNPALQILGSNSSVSNP-PWASGNNAGGIGSTSQTGLGSDGTKTGKDYDDTNLYIGYLPPNLDDDGLIQLFSPFGDIVMAKVIKDRVSGLSKGYGFVKYSDIAQANQAITSMNGYRLEGRVIAVRVAGKPPQPAVPPGPPGPSMPTYPGSNQAVGGYPSQQFTPGGPFGSAPSGSYMGAPVPWGPPVPHPYAPYTPPPPGSSMYTPVQGQPLAPYGVQYTPSLQAVPPGAPSQSAPSSEAQQNLPPGVESQNNTSVQSVTNNTYGNSLAGMPPNAQLAYPPSS-GYPSYYGVAPPP--LPQSMVDHSRGMGGVPWASNLPVPPPVSSA---EQTTFGADSEYEKFMAEMK 855
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QNP7 ((Branchpoint-bridging protein {ECO:0000313|EMBL:PSS11549.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 489/697 (70.16%), Postives = 554/697 (79.48%), Query Frame = 0
Match: A0A2R6QNP7 ((Branchpoint-bridging protein {ECO:0000313|EMBL:PSS11549.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 489/697 (70.16%), Postives = 554/697 (79.48%), Query Frame = 0
Query: 18 TNPNTTLAEHENTTRTRRKSRWDPVTEPNNPEKKKKSRWSEEEPKQ-AFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTAT---PDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYG--VNPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
T+ + + E E R RR+SRWDP + KK+KSRW+++EP FQLPDFMKDF GMD DP +QALN+RLLEIS+ILQ+ QLDDRP+ RSPSPEP+YDN+GIRINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQ RDLKFD ++NEDLHVLVEA+ QE+L+AAAGMVEKLL+PVDEGLNEHKRQQL+ELA+LNGTIRDDE+CRLCGE GHRQYACPSR+STFKS+VLCK CGDGGHPTIDCP+KGTAGKKMDDEYQNFLAELGG++PES TK S L+I GS S +NP PWA+ GS G++ HPGLGS + K+ KEID TNLYIGYLPPT++DD LIRLF PFGDIVMAKVIKDR+TG +KGYGFVK+SD+ QANQA SMNG+RL+GR IAVR+AG PQP VPPGPPAPP YP PN GGYPSQQ SGG LG PGSY G P PW PP PP P GSNMY P GQ MPPY + YPPP Q A P Q ++E QQ Y+ G+Q QSN SA +NNIYGNS GMAPNSQ TY PSS GY SYY PPPP V S+ +Q +FAS PWA PP PP + SA+++QQ +YGADPEYEKFMAEMK
Sbjct: 98 TDKDGSGGEEETAGRRRRRSRWDPPADGG--AKKRKSRWADDEPTLPVFQLPDFMKDFAGGMDLDPEIQALNARLLEISRILQSGCQLDDRPEGGRSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLGQNRDLKFDPAENEDLHVLVEAETQEALEAAAGMVEKLLQPVDEGLNEHKRQQLRELASLNGTIRDDEYCRLCGEQGHRQYACPSRMSTFKSDVLCKICGDGGHPTIDCPMKGTAGKKMDDEYQNFLAELGGTMPESLTKQSPALSITGSNGSVNNP-PWASGIGGGS-GNTSHPGLGSNITKMAKEIDDTNLYIGYLPPTLDDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDIAQANQAIGSMNGYRLDGRVIAVRIAGKPPQPAVPPGPPAPPMTNYPPPNQSVGGYPSQQNTSGGPLGSITPGSYTGAPVPWGPPAPPPYASYSHPFTGSNMYVPVPGQPMPPYGLPYPPPPQAAVPGAPSQRTPSSEAQQSYAPGVQPQSNVSADSAQSGANNIYGNSMTGMAPNSQITYHPSSLGYPSYYAPPPPPPPPPVSHSAVDQHNFASGPWASTPPAPPPILSAEKSQQASYGADPEYEKFMAEMK 790
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q826 ((Branchpoint-bridging protein {ECO:0000313|EMBL:PSS04036.1}))
HSP 1 Score: 875.159 bits (2260), Expect = 0.000e+0
Identity = 493/696 (70.83%), Postives = 561/696 (80.60%), Query Frame = 0
Match: A0A2R6Q826 ((Branchpoint-bridging protein {ECO:0000313|EMBL:PSS04036.1}))
HSP 1 Score: 875.159 bits (2260), Expect = 0.000e+0
Identity = 493/696 (70.83%), Postives = 561/696 (80.60%), Query Frame = 0
Query: 18 TNPNTTLAEHENTTRTRRKSRWDPVTEPNNPEKKKKSRWSEEEPKQ-AFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTAT---PDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGV-NPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
T+ + + E E R RR+SRWDP + KK+KSRW+++EP FQLPDFMKDF GMD DP +QALN+RLLEIS+ILQ+ QLDDRP+ RSPSPEP+YDN+GIRINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQ RDLKFD ++NEDLHVLVEA+ QE+L+AAAGMVEKLL+PVDEGLNEHKRQQL+ELAALNGTIRDDEFCRLCGE GHRQYACPSR+STFKS+VLCK CGDGGHPTIDCP+KGTAGKKMDDEYQ+FLAELGG++PES TK S L+I GS S +NP PWA +S G +G++ HPGLGS + K+ KEID TNLYIGYLPPT++DD LIRLF PFGDIVMAKVIKDR+TG +KGYGFVK+SD+ QANQA SMNG+RL+GR IAVRVAG PQP VPPGPPAPP YP PN GGYPSQQ SGG LG PPGSY G P PW PP PP P GSNMY P GQ MPPY++ YPPP Q A P Q+ ++E QQ Y+ G+Q Q+N SA +NNIYGNS GMA NSQ TY PSS GY SYY V PPPP + S+ +QQ+FAS PWA NPP PP +PSA+++QQ +YGADPEYEKFMAEMK
Sbjct: 100 TDKDGSGGEEETAGRRRRRSRWDPPADGG--AKKRKSRWADDEPTLPVFQLPDFMKDFAGGMDLDPEIQALNARLLEISRILQSGCQLDDRPEGGRSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLGQNRDLKFDPAENEDLHVLVEAETQEALEAAAGMVEKLLQPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEQGHRQYACPSRMSTFKSDVLCKICGDGGHPTIDCPMKGTAGKKMDDEYQSFLAELGGTMPESLTKQSPALSITGSNGSVNNP-PWA-SSIGGGSGNTSHPGLGSNITKMAKEIDDTNLYIGYLPPTLDDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDIAQANQAIGSMNGYRLDGRVIAVRVAGKPPQPAVPPGPPAPPMTNYPPPNQSIGGYPSQQNTSGGPLGGIPPGSYTGAPVPWGPPAPPPYAPYSHPFAGSNMYAPIPGQPMPPYSLPYPPPPQAAVPGAPSQSTPSSEAQQSYAPGVQPQNNVSADSAQSGANNIYGNSITGMASNSQITYHPSSLGYPSYYAVAPPPPPPMSHSAVDQQNFASGPWASNPPAPPLIPSAEKSQQASYGADPEYEKFMAEMK 791
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZRX4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8412964.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 487/699 (69.67%), Postives = 552/699 (78.97%), Query Frame = 0
Match: A0A834ZRX4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8412964.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 487/699 (69.67%), Postives = 552/699 (78.97%), Query Frame = 0
Query: 14 TSPDTNPNTTLAEHENTTRTRRKSRWDPVTEPN------NPEKKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTA---TPDQNL-ANAEPQQIYSAGMQSQSNTSAS---NNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQ-QSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFM 698
T T+ + + E E ++R RR+SRWDP + + +K+KSRW+++EPK FQLPDFMKDFT G++ DP VQ+LN RLLEIS++LQ+ + LDDRP+ ARSPSPEP+YDNMGIRINTRE+RARERLNRERQEII+ +IKRNPAFKPPADYRPPKL+KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGR QKRDLK D S+NEDLHVLVEAD QE+L+AAAGMVEKLL+PVDEGLNEHKRQQL+ELAALNGTIR+DEFCRLCGE GHRQYACP+R STFKS+VLCK CGDGGHPTIDCP+KGT GKKMDDEYQNFLAELGG+ PES TK + L IMGS +SGSNP PWA+ S AGS GS+ HPGLGS K GKE D TNLYIGYLPP ++DD LI+LF FGDIVMAKVIKDR+TG +KGYGFVK+SD+ QANQA ASMNG+RL GR IAVRVAG PQPV+PPGPPA P YPG GGYPSQQ GG LG PPG Y G P PW PP PP PPPPGSNMY P QGQ MPPY +QYPP QT P Q +++E QQ + G+QSQ+NTS NNIYGNS G+APN QPTYPPSS GY SYYGV PP VP S+ + QS SAPWA NPP+PP V SA +QT+YGAD E E +
Sbjct: 178 THSGTDKDNSGGEEETSSRRRRRSRWDPPADSDIQNGDAGGTRKRKSRWADDEPKPLFQLPDFMKDFTGGIELDPEVQSLNIRLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNMGIRINTREYRARERLNRERQEIISQMIKRNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDYSENEDLHVLVEADTQEALEAAAGMVEKLLQPVDEGLNEHKRQQLRELAALNGTIREDEFCRLCGEPGHRQYACPARTSTFKSDVLCKICGDGGHPTIDCPVKGTTGKKMDDEYQNFLAELGGTGPESLTKQNPALPIMGSNSSGSNP-PWASGSNAGSVGSTSHPGLGSNGAKTGKEYDDTNLYIGYLPPNLDDDGLIQLFSGFGDIVMAKVIKDRITGLSKGYGFVKYSDIAQANQAIASMNGYRLEGRVIAVRVAGKPPQPVLPPGPPAQTMPSYPG---SVGGYPSQQFTPGGPLGNMPPGGYTGAPVPWGPPVPPPYAPYTPPPPGSNMYTPVQGQHMPPYGVQYPPSFQTVPPGVPSQTAPSSSEAQQSFPPGVQSQNNTSVQSVPNNIYGNSLTGIAPNVQPTYPPSSLGYPSYYGVAPP---VPHSTVDHSQSMGSAPWASNPPVPPPVSSA---EQTSYGADSESEDTL 866
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DTM2 ((Splicing factor-like protein {ECO:0000313|EMBL:GFS42269.1}))
HSP 1 Score: 857.44 bits (2214), Expect = 0.000e+0
Identity = 481/697 (69.01%), Postives = 547/697 (78.48%), Query Frame = 0
Match: A0A7J0DTM2 ((Splicing factor-like protein {ECO:0000313|EMBL:GFS42269.1}))
HSP 1 Score: 857.44 bits (2214), Expect = 0.000e+0
Identity = 481/697 (69.01%), Postives = 547/697 (78.48%), Query Frame = 0
Query: 18 TNPNTTLAEHENTTRTRRKSRWDPVTEPNNPEKKKKSRWSEEEPKQ-AFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTAT---PDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGV--NPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
T+ + + E E R RR+SRWDP + KK+KSRW+++EP FQLPDFMKDF GMD DP +QALN+RLLEIS+ILQ+ QLDDRP+ RSPSPEP+YDN+GIRINTRE+RARERLNRERQEII+ IIKRNPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQ RDLKFD ++NEDLHVLVEA+ QE+L+AAAGMVEKLL+PVDEGLNEHKRQQL+ELAALNGTIRDDEFCRLCGE GHRQYACPSR+STFKS+VLCK CGDGGHPTIDCP+KGTAGKKMDDEYQ+FLAELGG++PES TK S L+I GS S +NP PWA +S G +G++ HPGLGS + K+ KEID TNLYIGYLPPT++DD LIRLF PFGDIVMAKVIKDR+TG +KGYGFVK+SD+ QANQA SMNG+RL+GR IAVRVAG PQPVVPPGPPAPP YP PNH Y G P PW PP PP P GSNMY P GQ MPPY++ YPPP Q A P Q+ ++E QQ Y+ G+Q QSN SA +NNIYGNS GMA NSQ TY PSS GY SYY V PPPP V S+ +QQ+FAS PWA NPP PP +PSA+++QQ +YGADPEYEKFMAEMK
Sbjct: 100 TDKDGSGGEEETAGRRRRRSRWDPPADGG--AKKRKSRWADDEPTLPVFQLPDFMKDFAGGMDLDPEIQALNARLLEISRILQSGCQLDDRPEGGRSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRLGQNRDLKFDPAENEDLHVLVEAETQEALEAAAGMVEKLLQPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEQGHRQYACPSRMSTFKSDVLCKICGDGGHPTIDCPMKGTAGKKMDDEYQSFLAELGGTMPESLTKQSPALSITGSNGSVNNP-PWA-SSIGGGSGNTSHPGLGSNITKMAKEIDDTNLYIGYLPPTLDDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDIAQANQAIGSMNGYRLDGRVIAVRVAGKPPQPVVPPGPPAPPMANYPPPNH-----------------------YTGAPVPWGPPAPPPYAPYSHPFAGSNMYAPIPGQPMPPYSLPYPPPPQAAVPGAPSQSTPSSEAQQSYAPGVQPQSNVSADSAQSGANNIYGNSMTGMASNSQITYHPSSLGYPSYYAVAPPPPPPPVSHSAVDQQNFASGPWASNPPAPPLIPSAEKSQQASYGADPEYEKFMAEMK 769
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G450 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7126421.1}))
HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0
Identity = 486/696 (69.83%), Postives = 548/696 (78.74%), Query Frame = 0
Match: A0A834G450 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7126421.1}))
HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0
Identity = 486/696 (69.83%), Postives = 548/696 (78.74%), Query Frame = 0
Query: 20 PNTTLAEHENTTRTRRKSRWDPVTEPNNPEKKKKSRWSEEEPK--QAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLK-GTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRP-PPPPYGGYPPPPPPGSNMYGPYQGQSMPPYAMQYPPPGQTAT---PDQNLANAEPQQIYSAGMQSQSNTSA------SNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPPPAVPQSSAEQQSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
PN+ L + ++T R RR+SRWDP ++ EKK+KSRW+++EPK AFQLPDFMKDF GMD DP +Q LN+RL EIS+ILQ+ VQLDDRP+ RSPSPEP+YDN GIRINTREFRARERLNRERQEII+ IIKRNP FKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS+KEGR GQKRDLKFD ++NEDLHVLVEAD QE+LDAAAGMVEKLL PVDEGLNEHKRQQL+ELAALNGTIRDDEFCRLCGEAGHRQ+ACPSR+STFKS+VLCK CGDGGHPTIDCP+K GTAGKKMDDEYQ+FLAELGG+ PE+ TK + L+IMGS S +NP PWA ++ G G++ PGLGSIV KEID NLYIGYLP T++DD LIRLF PFGDIVMAKVIKDR TG +KGYGFVK+SDV QANQA SMNG+RL GR IAVRVAG PQPVVPPGPPAPP YP PN GGYPSQQ SGG L P G Y+G P PW P PPPY P G N Y P QG MPPY + YPPP Q A P Q++ ++EP Y G+QSQ+N SA +NN+YGN+ GM PN Q Y P S GY SYY PPPP S+AE Q+FAS PWA NPP PPSV A++NQ ++GADPEYEKF+AEMK
Sbjct: 75 PNSNLNDDDSTGRRRRRSRWDPPSDSGG-EKKRKSRWADDEPKPAAAFQLPDFMKDFAGGMDMDPEIQPLNARLQEISRILQSGVQLDDRPEGGRSPSPEPIYDNFGIRINTREFRARERLNRERQEIISQIIKRNPTFKPPADYRPPKLNKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGRIGQKRDLKFDPAENEDLHVLVEADTQEALDAAAGMVEKLLHPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEAGHRQFACPSRMSTFKSDVLCKICGDGGHPTIDCPMKGGTAGKKMDDEYQSFLAELGGTGPEALTKLNPTLSIMGSNGSETNP-PWA-STIGGGTGNTSRPGLGSIVNTTDKEIDDANLYIGYLPSTLDDDALIRLFSPFGDIVMAKVIKDRNTGLSKGYGFVKYSDVAQANQAITSMNGYRLEGRVIAVRVAGKPPQPVVPPGPPAPPMSSYPPPNQSVGGYPSQQNTSGGPLAGMPSGGYVGAPVPWGPHAPPPYAPC-THPFGGQNNYAPVQGPPMPPYGVLYPPPPQPAVSGAPSQSMLSSEPTS-YPPGVQSQNNGSADSAKSGANNVYGNAMTGMPPNYQALYHPFSLGYPSYYAAAPPPPPSSHSTAEPQNFASGPWASNPPAPPSVSPAEKNQPASHGADPEYEKFIAEMK 765
BLAST of DCAR_004968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRE5 ((Putative branchpoint-bridging protein {ECO:0000313|EMBL:MPA46899.1}) (Fragment))
HSP 1 Score: 854.744 bits (2207), Expect = 0.000e+0
Identity = 462/680 (67.94%), Postives = 535/680 (78.68%), Query Frame = 0
Match: A0A5B6ZRE5 ((Putative branchpoint-bridging protein {ECO:0000313|EMBL:MPA46899.1}) (Fragment))
HSP 1 Score: 854.744 bits (2207), Expect = 0.000e+0
Identity = 462/680 (67.94%), Postives = 535/680 (78.68%), Query Frame = 0
Query: 39 WDPV-TEPNNPE-------KKKKSRWSEEEPKQAFQLPDFMKDFTQGMDTDPAVQALNSRLLEISQILQANVQLDDRPDNARSPSPEPLYDNMGIRINTREFRARERLNRERQEIIALIIKRNPAFKPPADYRPPKLYKKLGIPMREFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGQKRDLKFDSSDNEDLHVLVEADNQESLDAAAGMVEKLLRPVDEGLNEHKRQQLKELAALNGTIRDDEFCRLCGEAGHRQYACPSRLSTFKSEVLCKNCGDGGHPTIDCPLKGTAGKKMDDEYQNFLAELGGSVPESNTKHSTPLAIMGSENSGSNPSPWANNSTAGSNGSSLHPGLGSIVPKIGKEIDHTNLYIGYLPPTMEDDELIRLFQPFGDIVMAKVIKDRMTGQTKGYGFVKFSDVEQANQATASMNGHRLNGRAIAVRVAGIQPQPVVPPGPPAPPAPMYPGPNHGYGGYPSQQMQSGGSLGIAPPGSYMGPPPPWRPPPPPYGGYPPPPPPGSNMYGPYQ-GQSMPPYAMQYPPPGQTAT--PDQNLANAEPQQIYSAGMQSQSNT---SASNNIYGNSAAGMAPNSQPTYPPSSGGYASYYGVNPPP-PAVPQSSAEQ-QSFASAPWAVNPPLPPSVPSADQNQQTTYGADPEYEKFMAEMK 702
WDP +E NN +K+KSRW++++PK QLP+FMKDFT G++ DP +QALNSRLLEIS+ LQ+ + LDDRP+ ARSPSPEP+YDNMGIR+NTRE+RARERLNRERQEII+ IIK+NPAFKPPADYRPPKL KKL IPM+E+PGYNFIGLIIGPRGNTQKRME+ETGAKIVIRGKGSVKEGR QK+DLK+D S+NEDLHVLVEAD QE+LDAAAGMVEKLL+PVDE LNEHKR QL+ELAALNGTIRD+EFCRLCGE GHRQYACPSR STFKS+VLCK CGDGGHPTIDCP+KGT GKKMDDEYQNFLAELGG+VP+S TK ++ +GS +SGSNP PWA+ ++AG G + GLG+ K KE D TNLYIGYLPPT++DD LIRLF PFGDIVMAKVIKDR+TG +KGYGFVK+SDV+QAN A ASMNGHRL+GR IAVRVAG PQPV+PPGPPAP P YPGPN G YPSQQ +GG LG PPGSY G PP P P PPPPGS MY + GQSM PY +QYPPP ++ Q +++ E QQ Y G+QSQ++T S + +YG+S A + PN+QP YP SS GY SYYG PPP P V QS +Q QS + PWA NP + P V SA ++TTYG D EYEKFM+EMK
Sbjct: 202 WDPPPSESNNNSDASGTGTRKRKSRWADDDPKPVIQLPEFMKDFTGGIEFDPEIQALNSRLLEISRKLQSGLPLDDRPEGARSPSPEPIYDNMGIRVNTREYRARERLNRERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKKDLKYDHSENEDLHVLVEADTQEALDAAAGMVEKLLQPVDEVLNEHKRMQLRELAALNGTIRDEEFCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCPVKGTTGKKMDDEYQNFLAELGGTVPDSLTKQNSGTLALGSGSSGSNP-PWASGNSAGGVGGTPQAGLGTNGVKPLKEHDDTNLYIGYLPPTLDDDGLIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDVQQANNAIASMNGHRLDGRTIAVRVAGKPPQPVLPPGPPAPTMPTYPGPNQAVGAYPSQQYTTGGPLGNTPPGSY-GVTSVPWGPPVPPPYAPYPPPPGSAMYTTHVPGQSMFPYGVQYPPPVTVSSGAQSQTVSSGEAQQSYPPGVQSQNSTSVHSVATTVYGSSVAAVPPNAQPAYPISSYGYPSYYGAAPPPLPTVSQSMVDQSQSMVNVPWASNPLVSPPVSSA---EKTTYGTDAEYEKFMSEMK 876
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7HX30 | E-Value: 0.000e+0, PID: 71.96 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5957... [more] |
| A0A4S4D1A3 | E-Value: 0.000e+0, PID: 71.51 | (Uncharacterized protein {ECO:0000313|EMBL:THF9582... [more] |
| A0A124SD16 | E-Value: 0.000e+0, PID: 71.99 | (K Homology domain-containing protein {ECO:0000313... [more] |
| A0A834YIQ2 | E-Value: 0.000e+0, PID: 68.28 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8380... [more] |
| A0A2R6QNP7 | E-Value: 0.000e+0, PID: 70.16 | (Branchpoint-bridging protein {ECO:0000313|EMBL:PS... [more] |
| A0A2R6Q826 | E-Value: 0.000e+0, PID: 70.83 | (Branchpoint-bridging protein {ECO:0000313|EMBL:PS... [more] |
| A0A834ZRX4 | E-Value: 0.000e+0, PID: 69.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8412... [more] |
| A0A7J0DTM2 | E-Value: 0.000e+0, PID: 69.01 | (Splicing factor-like protein {ECO:0000313|EMBL:GF... [more] |
| A0A834G450 | E-Value: 0.000e+0, PID: 69.83 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7126... [more] |
| A0A5B6ZRE5 | E-Value: 0.000e+0, PID: 67.94 | (Putative branchpoint-bridging protein {ECO:000031... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |