Resource Type:
Polypeptide
Name:
DCAR_007094
Identifier:
DCAR_007094.mRNA-protein
Sequence:
MEPHHSNNNHASPPPPPPPPRPAPHWTTSTSQAELPMPPQSPPLPAPHHW
PLMTTSPPMSQAEMPPQYSQPYWPSESQEFYYQPMVMPPPLHYQPAPPGM
YDPPPGQYNGDPGMLAPYVPAYEYNYPGYQRTWSTDLCDCRSDCRNCLMT
GCCPCVTFGQVSEIVNQGQTSCWEGCFMYGLLSVILGLSTGGICTGIFGG
FYRYKLREKYKLRGTVFNDFLVHALCEPCALCQEYRELGRFGFEVPLGRL
CHRISQYSTSTIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTG
EVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLE
KHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPV
DGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQ
TPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGS
TETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFF
NMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQID
SAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIA
QDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRAL
RAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVK
NPAWL*
Sequence Length:
756
Sequence Checksum:
6bd1c9bb0f764bf85cbe457fc1a3d9b8
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_007094, derives from mRNA, DCAR_007094. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V602 ((aldehyde dehydrogenase family 2 member B7, mitochondrial-like {ECO:0000313|RefSeq:XP_027098145.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 399/503 (79.32%), Postives = 445/503 (88.47%), Query Frame = 0
Match: A0A6P6V602 ((aldehyde dehydrogenase family 2 member B7, mitochondrial-like {ECO:0000313|RefSeq:XP_027098145.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 399/503 (79.32%), Postives = 445/503 (88.47%), Query Frame = 0
Query: 254 ISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
IS+YST+ +EEP+KPPV V Y+KLLI+GQFVDA SGKTFPT+DPRTGEVIAHVAEGD ED++ AVAAARKAF +GPWP++ AYDR ILLRFADL+EKHNDEIAALE+WD GKP++Q+A +EVPM R RYYAGWADKI G+TVP DG YH QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNTVV+KTAEQTPLSALYV+ LL EAGLP GVLN+VSG G AGAALC HMDVDKLAFTGSTETGK +L SA SNLK VTLELGGKSPFIVCEDA++D AVELAH ALFFN GQCCCAGSRTYVHERVYDEFVEKA ARA R VGDPFR EQGPQ+DS Q+EKIL YIR+G+D GA LETGGD++GEKG+Y+KPTVFSNVQDDM+IA++EIFGPVQ+ILK+K LDEV RAN++RYGLAAGVFT++L+TANT+MRALRAGTVWINC+DTFDAAIPFGGYKMSG GREKG Y L NYLQVKAVV P+KNPAWL
Sbjct: 35 ISRYSTAAALEEPIKPPVNVEYTKLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPRLTAYDRQRILLRFADLVEKHNDEIAALETWDNGKPYEQAAKIEVPMFVRLMRYYAGWADKIHGMTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVVLKTAEQTPLSALYVTKLLHEAGLPSGVLNVVSGFGPTAGAALCSHMDVDKLAFTGSTETGKIILELSARSNLKPVTLELGGKSPFIVCEDADVDNAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKATARALKRSVGDPFRQEIEQGPQVDSEQFEKILRYIRAGVDSGATLETGGDRLGEKGYYIKPTVFSNVQDDMLIAKEEIFGPVQTILKYKDLDEVTRRANSSRYGLAAGVFTQNLDTANTLMRALRAGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 537
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TW89 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 402/503 (79.92%), Postives = 445/503 (88.47%), Query Frame = 0
Match: A0A068TW89 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 402/503 (79.92%), Postives = 445/503 (88.47%), Query Frame = 0
Query: 254 ISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
IS+YST+ +EEP+KPPV V Y+KLLI+GQFVDA SGKTFPT+DPRTGEVIAHVAEGD ED++ AVAAARKAF +GPWPK+ AYDR ILLRFADL+EKHNDEIAALE+WD GKP++Q+A +EVPM R RYYAGWADKI G+TVP DG YH QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNTVV+KTAEQTPLSALYV+ LL EAGLP GVLN+VSG G AGAALC HMDVDKLAFTGSTETGK +L SA SNLK VTLELGGKSPFIVCEDA++D AVELAH ALFFN GQCCCAGSRTYVHERVYDEFVEKA ARA R VGDPFR EQGPQ+DS Q+EKIL YIR+G+D GA LETGGD++GEKG+Y+KPTVFSNVQDDM IA++EIFGPVQ+ILK+K LDEVI RAN+TRYGLAAGVFT++L+TANT+MRALRAGTVWINC+DTFDAAIPFGGYKMSG GREKG Y L NYLQVKAVV P+KNPAWL
Sbjct: 36 ISRYSTAAALEEPIKPPVNVEYTKLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKLTAYDRQRILLRFADLVEKHNDEIAALETWDNGKPYEQAAKIEVPMFVRLMRYYAGWADKIHGMTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVVLKTAEQTPLSALYVTKLLHEAGLPSGVLNVVSGFGPTAGAALCSHMDVDKLAFTGSTETGKIILELSARSNLKPVTLELGGKSPFIVCEDADVDNAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKATARALKRSVGDPFRQEIEQGPQVDSEQFEKILRYIRAGVDSGATLETGGDRLGEKGYYIKPTVFSNVQDDMPIAKEEIFGPVQTILKYKDLDEVIRRANSTRYGLAAGVFTQNLDTANTLMRALRAGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 538
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A288W8F7 ((ALDH14 {ECO:0000313|EMBL:ARU08111.1}))
HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0
Identity = 398/504 (78.97%), Postives = 443/504 (87.90%), Query Frame = 0
Match: A0A288W8F7 ((ALDH14 {ECO:0000313|EMBL:ARU08111.1}))
HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0
Identity = 398/504 (78.97%), Postives = 443/504 (87.90%), Query Frame = 0
Query: 254 ISQYSTST--IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
IS+YST+ +EEP+KPPV V Y++LLI+GQFVDA SGKTFPT+DPRTGEVIAHVAEGD EDI+ AVAAARKAF +GPWPKM AY+R ILLRFADL+EKHNDEIAALE+WD GKP++Q+A +EVPM R RYYAGWADKI G+TVP DG +H QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNT+V+KTAEQTPLSALYV+ LL EAGLP G LN+VSG G AGAALC HMDVDKLAFTGSTETGK +L SA SNLK VTLELGGKSPFIVCEDA++D AVELAH ALFFN GQCCCAGSRTYVHERVYDEFVEKA ARA R VGDPFR EQGPQ+DS Q++KIL YIR+G+D GA LETGGD++GEKG+Y+KPTVFSNVQDDM+IA DEIFGPVQSILK++ LDEVI RAN++RYGLAAGVFT+SL+TANT+MRALR GTVWINC+DTFDAAIPFGGYKMSG GREKG Y L NYLQVKAVV P+KNPAWL
Sbjct: 34 ISRYSTAAAALEEPIKPPVSVEYTQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVAAARKAFDEGPWPKMTAYERQRILLRFADLVEKHNDEIAALETWDNGKPYEQAAKIEVPMFVRLIRYYAGWADKIHGMTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTIVLKTAEQTPLSALYVTKLLHEAGLPSGALNVVSGFGPTAGAALCSHMDVDKLAFTGSTETGKVILELSAKSNLKPVTLELGGKSPFIVCEDADVDNAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKATARALKRSVGDPFRQEIEQGPQVDSEQFQKILRYIRAGVDGGATLETGGDRLGEKGYYIKPTVFSNVQDDMLIATDEIFGPVQSILKYRDLDEVIRRANSSRYGLAAGVFTQSLDTANTVMRALRVGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 537
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5S8F3 ((aldehyde dehydrogenase family 2 member B7, mitochondrial {ECO:0000313|RefSeq:XP_021809761.1}))
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 393/503 (78.13%), Postives = 449/503 (89.26%), Query Frame = 0
Match: A0A6P5S8F3 ((aldehyde dehydrogenase family 2 member B7, mitochondrial {ECO:0000313|RefSeq:XP_021809761.1}))
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 393/503 (78.13%), Postives = 449/503 (89.26%), Query Frame = 0
Query: 254 ISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
I +YST ++IE P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIAALE+WD GKPF+Q+A +EVPML RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAE TPLSALYV+ LL EAGLPPGVLN+VSG G AGAALC HM+VDK+AFTGST+TGKKVL +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH A+FFN GQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF++G EQGPQIDS Q++KIL YI GI GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RANATRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV P+KNPAWL
Sbjct: 32 IGKYSTDASIEAPIIPSVKVNYTQLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIAALETWDNGKPFEQAAKIEVPMLVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAELTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKIVTLELGGKSPFIVCEDADVDKAVELAHFAVFFNTGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKEGVEQGPQIDSDQFQKILKYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANATRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTPLKNPAWL 534
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XAM9 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 391/503 (77.73%), Postives = 446/503 (88.67%), Query Frame = 0
Match: M5XAM9 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 391/503 (77.73%), Postives = 446/503 (88.67%), Query Frame = 0
Query: 254 ISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
I +YST ++ E P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA LE+WD GKPF+Q+A EVPM+ RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAEQTPLSALYV+ LL EAGLPPGVLN+VSG G AGAALC HM+VDK+AFTGST+TGKKVL +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFNMGQCCC+GSRT+VHERVYDEF+EKA+ARA+ R+VGDPF+ G EQGPQIDS Q+EKIL YI GI GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RAN TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKA+V P+KNPAWL
Sbjct: 32 IGKYSTDASFEAPIIPSVKVNYTRLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIATLETWDNGKPFEQAAKTEVPMIVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAEQTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKTVTLELGGKSPFIVCEDADVDKAVELAHFALFFNMGQCCCSGSRTFVHERVYDEFIEKARARAEKRIVGDPFKGGVEQGPQIDSDQFEKILRYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANTTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDVFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAIVTPLKNPAWL 534
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314UVY1 ((Aldehyde dehydrogenase family 2 member B7 mitochondrial {ECO:0000313|EMBL:PQM40956.1}))
HSP 1 Score: 835.869 bits (2158), Expect = 0.000e+0
Identity = 393/503 (78.13%), Postives = 447/503 (88.87%), Query Frame = 0
Match: A0A314UVY1 ((Aldehyde dehydrogenase family 2 member B7 mitochondrial {ECO:0000313|EMBL:PQM40956.1}))
HSP 1 Score: 835.869 bits (2158), Expect = 0.000e+0
Identity = 393/503 (78.13%), Postives = 447/503 (88.87%), Query Frame = 0
Query: 254 ISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
I +YST ++IEEP+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA+LE+WD GKPF+Q+A EVPML RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAE TPLSALYV+ LL EAGLPPGVLN+VSG G AGAALC HM+VDK+AFTGST+TGKKVL +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH A+FFN GQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF+ G EQGPQIDS Q++KIL YI GI GA LETGG ++G KGFY+KPTVFSNVQDDM IAQDEIFGPVQSILK+K LDEVI RAN TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV P+KNPAWL
Sbjct: 32 IGKYSTDASIEEPIIPSVKVNYTQLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIASLETWDNGKPFEQAAKTEVPMLVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAELTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKIVTLELGGKSPFIVCEDADVDKAVELAHFAVFFNTGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKGGVEQGPQIDSDQFQKILKYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVQDDMPIAQDEIFGPVQSILKYKDLDEVIRRANTTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTPLKNPAWL 534
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y1QQG3 ((Aldehyde dehydrogenase 2B4 {ECO:0000313|EMBL:BBG94092.1}) (Full=PREDICTED: aldehyde {ECO:0000313|EMBL:VVA13451.1}))
HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 392/503 (77.93%), Postives = 446/503 (88.67%), Query Frame = 0
Match: A0A4Y1QQG3 ((Aldehyde dehydrogenase 2B4 {ECO:0000313|EMBL:BBG94092.1}) (Full=PREDICTED: aldehyde {ECO:0000313|EMBL:VVA13451.1}))
HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 392/503 (77.93%), Postives = 446/503 (88.67%), Query Frame = 0
Query: 254 ISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
I +YST ++ E P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA LE+WD GKPF+Q+A EVPM+ RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAEQTPLSALYV+ LL EAGLPPGVLN+VSG G AGAALC HM+VDK+AFTGST+TGKKVL +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFNMGQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF+ G EQGPQIDS Q+EKIL YI GI GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RAN+TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV +KNPAWL
Sbjct: 32 IGKYSTDASFEAPIIPSVKVNYTRLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIATLETWDNGKPFEQAAKTEVPMIVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAEQTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKTVTLELGGKSPFIVCEDADVDKAVELAHFALFFNMGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKGGVEQGPQIDSDQFEKILRYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANSTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDVFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTLLKNPAWL 534
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IEI6 ((Putative aldehyde dehydrogenase family 2 member B7, mitochondrial-like {ECO:0000313|EMBL:JAP30384.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 390/513 (76.02%), Postives = 448/513 (87.33%), Query Frame = 0
Match: A0A0V0IEI6 ((Putative aldehyde dehydrogenase family 2 member B7, mitochondrial-like {ECO:0000313|EMBL:JAP30384.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 390/513 (76.02%), Postives = 448/513 (87.33%), Query Frame = 0
Query: 248 GRLCH--RISQYSTST---IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
G+ H RI+ Y ST +EEP+KP V V+++KL I+GQFVDA SGKTFPT+DPRTGEVIAH++EGD EDI+ AVAAARKAF +GPWP+M AY+RS ILLR ADL+EKHND+IA LE+WDTGKP+ Q+A +EVPM+ R RYYAGWADKI G+T+P DG YH QTLHEPIGV GQIIPWNFPLLM+ WK+ PALACGNTVV+KTAEQTPLSALYV+NLL EAGLP GVLNI+SG G AGA+LC HMDVDKLAFTGSTETGK +L +A SNLK VTLELGGKSPFIVCEDA+ID AVE AH ALFFN GQCCCAGSRTYVHE+VYDEF+EKAKARA RVVGDPF+ GTEQGPQIDS Q++KI+ YIRSG+D GA LETGG++ G+KG+Y+KPTVFSNV+DDM+IAQDEIFGPVQSILKFK LDEV+ RAN++RYGLAAGVF+++++TANT+ RALR GTVWINC+DTFDA IPFGGYKMSG GREKG YGL NYLQVKAVV P+KNPAWL
Sbjct: 17 GKRSHLGRIAAYKYSTAAALEEPIKPTVNVDHTKLFINGQFVDAASGKTFPTLDPRTGEVIAHISEGDAEDINRAVAAARKAFDEGPWPRMTAYERSKILLRLADLIEKHNDQIATLETWDTGKPYAQAAKIEVPMVVRLLRYYAGWADKIHGMTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFSWKIGPALACGNTVVLKTAEQTPLSALYVANLLQEAGLPEGVLNIISGFGATAGASLCSHMDVDKLAFTGSTETGKTILELAAKSNLKPVTLELGGKSPFIVCEDADIDTAVEQAHFALFFNQGQCCCAGSRTYVHEKVYDEFLEKAKARALKRVVGDPFKSGTEQGPQIDSKQFDKIMKYIRSGVDSGATLETGGEQFGKKGYYIKPTVFSNVKDDMLIAQDEIFGPVQSILKFKDLDEVVRRANSSRYGLAAGVFSQNIDTANTLARALRVGTVWINCFDTFDATIPFGGYKMSGQGREKGEYGLRNYLQVKAVVTPLKNPAWL 529
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QX78 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0
Identity = 393/534 (73.60%), Postives = 454/534 (85.02%), Query Frame = 0
Match: A0A5N6QX78 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0
Identity = 393/534 (73.60%), Postives = 454/534 (85.02%), Query Frame = 0
Query: 222 VHALCEPCALCQEYRELGRFGFEVPLGRLCHRISQYSTSTIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
+ +L A R LGR GR +R S ++ IEEP+ PPV++++++LLI+GQFVDA SGKTFPT+DPRTGEVIAHV+EGD ED++ AV+AARKAF +GPWPKM Y+RS IL RFADLLEKHNDE+AALE+WD GKP++Q+A VE+PM+TR FRYYAGWADKI GLTVP DG YH QTLHEPIGV GQI+PWNFPLLMY WKV PALACGNT+V+KTAEQTPLSA+YVS L LEAGLPPGVLN++SG G AGAA+C HMDVDKLAFTGST TGK VL ++ SNLK VTLELGGKSP IVCEDA+ID AVE AH ALFFN GQCCCAGSRT+VHERVYDEFVEKAKARA RVVGDPF+ G EQGPQID Q++KIL YIRSGI+ GA LE+GGD +G KG+Y++PTVFSNVQDDM+IA+DEIFGPVQSILKF+TLDEVI RANA+RYGLAAGVFT+++ TANT+ RAL+AGT+WINCY FDAAIPFGGYKMSG GREKG+Y L+NYLQVKAVV P++NPAWL
Sbjct: 6 LSSLLSVSATSASLRSLGR---HFSWGRGINRFS--TSVAIEEPITPPVQIDHTQLLINGQFVDAASGKTFPTLDPRTGEVIAHVSEGDTEDVNRAVSAARKAFDEGPWPKMTPYERSRILFRFADLLEKHNDEVAALETWDNGKPYEQAANVEIPMVTRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIVPWNFPLLMYAWKVGPALACGNTIVLKTAEQTPLSAMYVSKLFLEAGLPPGVLNLISGFGPTAGAAICSHMDVDKLAFTGSTNTGKIVLELASKSNLKPVTLELGGKSPIIVCEDADIDLAVENAHSALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKKGVEQGPQIDGVQFKKILSYIRSGIESGATLESGGDSVGSKGYYIQPTVFSNVQDDMLIAKDEIFGPVQSILKFQTLDEVIRRANASRYGLAAGVFTKNINTANTLTRALKAGTIWINCYIVFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 534
BLAST of DCAR_007094 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834Z095 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8399279.1}))
HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 395/503 (78.53%), Postives = 446/503 (88.67%), Query Frame = 0
Match: A0A834Z095 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8399279.1}))
HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 395/503 (78.53%), Postives = 446/503 (88.67%), Query Frame = 0
Query: 254 ISQYSTSTI-EEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 755
I ++ST+ EEP+ PPV+VN+++LLI+GQFVDA SGKTFPT+DPRTGEVIA VAEG EDI+ AV+AARKAF +GPWPKM +Y+RS I+ RFADLLEKH+DEIAALE+WD GKP++Q+ E+PML R FRYYAGWADKI GLT+PVDG YH QTLHEPIGV GQIIPWNFPLLMY WKVAPALACGN+VV+KTAEQTPLSALYVS L EAGLPPGVLN+VSG G AGAALC HMDVDKLAFTGST+TGK VL +A SNLK VTLELGGKSPFIVCEDA+ID+AVELAH ALFFN GQCCCAGSRT+VHERVY+EFVEKAKARA RVVGDPF+ G EQGPQIDS Q+EKIL YIRSGI+ GA LE+GG++IG KG+Y++PTVFSNVQDDM+IA+DEIFGPVQSILKFK LDEVI RANAT YGLAAGVFT+ ++TANT+ RAL+AGTVWINC+D FDAAIPFGGYKMSG GREKG+Y LNNYLQVKAVV P+KNPAWL
Sbjct: 70 ICRFSTAVANEEPITPPVQVNHTQLLINGQFVDASSGKTFPTLDPRTGEVIAQVAEGGAEDINRAVSAARKAFDEGPWPKMTSYERSQIIFRFADLLEKHSDEIAALETWDNGKPYEQAKQAEIPMLIRVFRYYAGWADKIHGLTIPVDGPYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVAPALACGNSVVLKTAEQTPLSALYVSKLFHEAGLPPGVLNVVSGFGPTAGAALCSHMDVDKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADIDKAVELAHFALFFNQGQCCCAGSRTFVHERVYNEFVEKAKARALKRVVGDPFKKGIEQGPQIDSKQFEKILRYIRSGIESGATLESGGERIGSKGYYIQPTVFSNVQDDMLIAKDEIFGPVQSILKFKNLDEVIRRANATHYGLAAGVFTQDIDTANTLTRALKAGTVWINCFDVFDAAIPFGGYKMSGHGREKGIYCLNNYLQVKAVVTPLKNPAWL 572
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6V602 | E-Value: 0.000e+0, PID: 79.32 | (aldehyde dehydrogenase family 2 member B7, mitoch... [more] |
| A0A068TW89 | E-Value: 0.000e+0, PID: 79.92 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A288W8F7 | E-Value: 0.000e+0, PID: 78.97 | (ALDH14 {ECO:0000313|EMBL:ARU08111.1})[more] |
| A0A6P5S8F3 | E-Value: 0.000e+0, PID: 78.13 | (aldehyde dehydrogenase family 2 member B7, mitoch... [more] |
| M5XAM9 | E-Value: 0.000e+0, PID: 77.73 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A314UVY1 | E-Value: 0.000e+0, PID: 78.13 | (Aldehyde dehydrogenase family 2 member B7 mitocho... [more] |
| A0A4Y1QQG3 | E-Value: 0.000e+0, PID: 77.93 | (Aldehyde dehydrogenase 2B4 {ECO:0000313|EMBL:BBG9... [more] |
| A0A0V0IEI6 | E-Value: 0.000e+0, PID: 76.02 | (Putative aldehyde dehydrogenase family 2 member B... [more] |
| A0A5N6QX78 | E-Value: 0.000e+0, PID: 73.60 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A834Z095 | E-Value: 0.000e+0, PID: 78.53 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8399... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |