DCAR_006329 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_006329

Identifier:

DCAR_006329.mRNA-protein

Sequence:

MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAI
LVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDE
ERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYP
PDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQ
ELYPSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGA
VHPALEQYNDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPI
SWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHH
SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQ
LHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLPVKQEK
PDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAI
GALLAEDVA*

Sequence Length:

510

Sequence Checksum:

202880c47a8e11da263bf3a16be4ebd9

View location in JBrowse:

DCARv2_Chr2:24325880..24329432-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_006329, derives from mRNA, DCAR_006329.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVZ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA36062.1}))

HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 322/528 (60.98%), Postives = 387/528 (73.30%), Query Frame = 0

Query:    1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS-FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFG-----AVHPALEQYNDDF---QTASKSFRTSYDHDIS----SSSYLPSGSHALINGNSSSL-PISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHH-SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            MSN T+ESED+M + D  DSPS EEA+S  N+ GGG LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EER IIELHA+MGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGL IYPPDIC Q+ +EN  S NMG F SG T +P+ L TNN EIP+VEFK L +NQ+LY S   + P  + L+ GL  S  NS ++S MHP KRLRESE  LPG       AV PA  QY DD       S  F ++YDH+++    SSS +  GSHA +NGNSSS  PISWAMKLELPSLQYS +Q GSW +P SPLPS+ESVDTLIQ+P +E  E  +  SP+N+GLLE++LYE+R LKN+K NSC QTP+        DSSS       L + +W+   DP SPLGHS ASV+ E TP+SG+S DEPQ ++ +P   VKQE  +WV+ T  +  + N+  + ++RPDFLL SN+FG S + GK++ +L DAI ALL ED +
Sbjct:    1 MSNTTSESEDRMVSKDCADSPSVEEASSGENLVGGGPLKKGPWTSAEDAILVEYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGAFTPEEERCIIELHAQMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLSIYPPDICLQALNENQQSQNMGPFPSGNTRHPDLLSTNNFEIPAVEFKNLELNQQLYSSDLFDNPPSSLLAQGLGSSYGNSFMFSMMHPPKRLRESESLLPGVNDTICDAV-PAFSQYRDDCCDKVAQSYGFSSAYDHNLNVSQPSSSCVFPGSHAFLNGNSSSSEPISWAMKLELPSLQYSDTQAGSWGTPSSPLPSIESVDTLIQSPATEQTERDYCLSPRNSGLLEAVLYEARNLKNSKTNSCHQTPDASVMPVDVDSSSH-----NLCETEWEVSLDPISPLGHSAASVFSEYTPISGSSSDEPQSVEKIPGCKVKQEAVNWVT-TQYDGKEENANQMILTRPDFLLGSNFFGNSTERGKEHSMLSDAIEALLGEDFS 521

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BS28 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8544522.1}))

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 320/530 (60.38%), Postives = 386/530 (72.83%), Query Frame = 0

Query:    1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS-FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDD---FQTASKSFRTSYDHDI-----SSSSYLPSGSHALINGN-SSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHH-SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTL---PVKQEKPDWVSMT-NGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            M+N T+ESED+M + D  DSPS EE   +GN+ GGG LKKGPWTSAEDAILVDYV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGL IYPPDIC Q+ +EN  + NM  F S +T +P+ LPTNN EIP+VEFK L +NQ+ Y S  ++ PA + L+ GL  S SN+ ++S MHP KRLRESE  LPG       AV PA  QY DD       S  F + YD+++     SSS  LP GSHA +NGN SSS  ISWAMKLELPSLQYS +Q GSW +P SPLPS+ESVDTLI++P +E  E  +  SP+N+GLL+++LYE+R LKN+KNNSCG +  +  P  G D SS       L +A W+   DP SPLGHS ASV+ E TP+SG+S DEPQ ++++    VKQE  DWV+   +GNE + N   +  +RPDFLL SN+F  S + GK++ +L DAI ALL ED +
Sbjct:    1 MNNMTSESEDRMVSKDCADSPSVEE-VGDGNLAGGGPLKKGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGAFTPEEERHIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLSIYPPDICLQALNENQQTRNMDLFPSADTHHPDLLPTNNFEIPAVEFKNLELNQQFYSSALLDNPASSLLTQGLGCSYSNNFMFSTMHPPKRLRESESLLPGVNDTLCNAV-PAFGQYQDDGCEKVAQSIGFSSVYDYNLNVSQPSSSCVLP-GSHAFLNGNSSSSESISWAMKLELPSLQYSDTQAGSWGTPSSPLPSIESVDTLIRSPATEQIERDYCLSPRNSGLLDAVLYEARTLKNSKNNSCGTSDASVMPG-GVDGSSH-----NLWEAKWEVSHDPISPLGHSAASVFSEYTPISGSSSDEPQSVESMQGCKVKQEAFDWVTARYDGNEDNAN--QMISTRPDFLLGSNFFCNSTERGKEHSMLTDAIEALLGEDFS 519

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TSY0 ((transcription factor GAMYB-like {ECO:0000313|RefSeq:XP_027081255.1}))

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 299/516 (57.95%), Postives = 365/516 (70.74%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS---------FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDDFQTASKSF--RTSYDHDI-----SSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWV-SMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYF 494
            T+ESED+M     + SPS EE +  GN    G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDIC Q+  E+  S N+  FSS ET +P+ LP N+ EIP+VEFK L +N +LYPS          ++IPA + L+ GL  S    IL S +HP KRLR+SE   PG      GA     + +ND      +SF   ++YD ++     S+S  LP GSHAL+NGN SS   SWAMKLELPSLQ   +Q+GSW SP SPLPSLESVDTLIQ+PP+EH +SG  SP+N+GLL+++LYES++LKN K++SC Q  ++ + A G    + L D   LH+A+W++ GDP SP GHS ASV  E TP+S +S+DE Q ++  P   VKQE  + V +   GN+   NS ++  SRPDFLL SN FG   +YGK+  
Sbjct:    4 TSESEDRMVPKGAIGSPSIEETSGGGNFGVNGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDICLQALSESKQSENLSSFSSVETQHPDLLPINSFEIPAVEFKNLELNHQLYPSPLLDVPGRGLLDIPASSLLAQGLHSSYGGKILLSAVHPTKRLRQSESLFPGLATSFTGAFTNCSKYHNDGSAQNLQSFGITSAYDQNLTSDNQSTSCVLP-GSHALLNGNPSSSEPSWAMKLELPSLQ---TQIGSWGSPSSPLPSLESVDTLIQSPPTEHTQSGSLSPRNSGLLDAVLYESQSLKNFKSSSC-QHMSSVSMAQGEVMDNSLQD---LHEAEWEAYGDPISPRGHSAASVLSEYTPISRSSMDELQSLENTPGGKVKQEAEEMVPTQFCGNDDAFNSNNMIFSRPDFLLASNCFGPKGEYGKEQL 511

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UQ74 ((Uncharacterized protein {ECO:0000313|EMBL:CDP09733.1}))

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 298/516 (57.75%), Postives = 365/516 (70.74%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS---------FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDDFQTASKSF--RTSYDHDI-----SSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWV-SMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYF 494
            T+ESED+M     + SPS EE +  GN    G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDIC Q+  E+  S N+  FSS ET +P+ LP N+ EIP+VEFK L +N +LYPS          ++IPA + L+ GL  S     L S +HP KRLR+SE   PG      GA     + +ND    + +SF   ++YD ++     S+S  LP GSHAL+NGN SS   SWAMKLELPSLQ   +Q+GSW SP SPLPSLESVDTLIQ+PP+EH +SG  SP+N+GLL+++LYES++LKN K++SC Q  ++ + A G    + L D   LH+A+W++ GDP SP GHS ASV  E TP+S +S+DE Q ++  P   VKQE  + V +   GN+   NS ++  SRPDFLL SN FG   +YGK+  
Sbjct:    4 TSESEDRMVPKGAIGSPSIEETSGGGNFGVNGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDICLQALSESKQSENLSSFSSVETQHPDLLPINSFEIPAVEFKNLELNHQLYPSPLLDVPGRGLLDIPASSLLAQGLHSSYGGKTLLSAVHPTKRLRQSESLFPGLATSFTGAFTNCSKYHNDGSAQSLQSFGITSAYDQNLTSDNHSTSCVLP-GSHALLNGNPSSSEPSWAMKLELPSLQ---TQIGSWGSPSSPLPSLESVDTLIQSPPTEHTQSGSLSPRNSGLLDAVLYESQSLKNFKSSSC-QHMSSVSMAQGEVMDNSLQD---LHEAEWEAYGDPISPRGHSAASVLSEYTPISRSSMDELQSLENTPGGKVKQEAEEMVPTQFCGNDDAFNSNNMIFSRPDFLLASNCFGPKGEYGKEQL 511

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M096 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9462071.1}) (Fragment))

HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 310/549 (56.47%), Postives = 377/549 (68.67%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAE------------------------LPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF--GAV--HPALEQYNDD-FQTASKSFRTS--YDHD-----ISSSSYLPSGSHALINGNSS-SLPISWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANG-ADSSSQ-LHD-ASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            T+ES+D+  + D +DSP  EEA+S GN+ GG  LKKGPWTS EDAIL+DYV KHGEGNWNAVQK+SGL RCGKSCRLRWANHLRPDL+KGSFTPDEER IIELHAKMGNKWARMAAE                        LPGRTDNEIKN+WNTRIKR QRAGLPIYPPDIC Q+  +N    + G   +GE  +P+ LPT++ +IP+VEFK L  NQ+LY P  ++IP  +  + GL  S SNS+++S +HPAKRLR+SE  LPG   G +   PA +QY DD  +   +SF  S  YD D     +SSSS  P GSHAL+NGNSS S P+SWAMK ELPSLQYS +Q+GS  +PSPLPSLES DTLIQ+P +E  +S   S +N+GLLE++LYES  LK+ KN  C Q  N    A    DSSSQ LH+  S++H        DP SPLGHS ASV+ ECTP+ G S DEP     LP   VKQE  DW ++   ++ + NS  +  SRPDFLLDS+WFG S + G+++ +L DAIGALL ED +
Sbjct:    2 TSESKDRTVSKDCIDSPYAEEASSGGNLGGGSPLKKGPWTSTEDAILIDYVHKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPDLRKGSFTPDEERHIIELHAKMGNKWARMAAERGNVMFMSNNAALMIGEEIFPSLMLPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDIC-QALHDNQHCQHTGSLPTGEAQHPDLLPTDSFDIPAVEFKNLEFNQQLYSPILLDIPPSSLPAQGLGSSHSNSLMFSMLHPAKRLRQSECLLPGVNSGTIDGFPAFDQYEDDGCEKIGQSFTFSAMYDRDRKASRMSSSSRNP-GSHALLNGNSSTSEPMSWAMKSELPSLQYSDTQVGSGVTPSPLPSLESDDTLIQSPSTEQTQSDSLSRRNSGLLEAVLYESETLKSAKNGCCHQNSNVSVVAGDLVDSSSQSLHERKSKIH------TNDPISPLGHSGASVFSECTPIGGYSFDEPYSAYILPGCKVKQEAVDWGTVKCFDKEE-NSNEMLFSRPDFLLDSSWFGHSTERGREHSVLTDAIGALLGEDFS 541

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G082 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120306.1}))

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 308/549 (56.10%), Postives = 377/549 (68.67%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAE------------------------LPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPG--FGAV--HPALEQYNDD-FQTASKSFRTS--YDHD-----ISSSSYLPSGSHALINGNSS-SLPISWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANG-ADSSSQ-LHDA-SQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSN-WFGLSADYGKDYFILRDAIGALLAEDV 508
            T+ES+D+  + D +DSP  EEA+S GN+ GG  LKKGPWTS ED+IL+DYV KHGEGNWNAVQK+SGL RCGKSCRLRWANHLRPDL+KGSFTPDEER IIELHAKMGNKWARMAAE                        LPGRTDNEIKN+WNTRIKR QRAGLPIYPPDIC Q+  +N    + G   +GE  +P+ LPT++ +IP+VEFK L  NQ+LY P  ++IP  +  + GL  S SNS+++S +HPAKRLR+SE  LPG   G +   PA +QY DD  +   +SF  S  YD D     +SSSS  P GSHAL+NGNSS S P+SWAMK ELPSLQYS +Q+GS  +PSPLPSLES DTLIQ+P +E  +S   S +N+GLLE++LYES  LK+ KN  C Q  N    A+   DSSSQ LH+  S++H        DP SPLGHS ASV+ ECTP+ G S DEP     LP   VKQE  DW ++   ++ + N+  +  SRPDFLLDS+ WFG S + G+++ +L DAIGALL ED 
Sbjct:    2 TSESKDRTVSKDCIDSPYAEEASSGGNLGGGSPLKKGPWTSTEDSILIDYVHKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPDLRKGSFTPDEERHIIELHAKMGNKWARMAAERGNVMFMSNNAALMIGEEIFPSLMLPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDIC-QALHDNQHCQHTGSLPTGEAQHPDLLPTDSFDIPAVEFKNLEFNQQLYSPILLDIPPSSLPAQGLGSSHSNSLMFSMLHPAKRLRQSECLLPGGNSGTIDGFPAFDQYEDDGCEKIGQSFTFSAMYDRDRKASQLSSSSRNP-GSHALLNGNSSTSEPMSWAMKSELPSLQYSDTQVGSGVTPSPLPSLESDDTLIQSPSTEQTQSDSLSRRNSGLLEAVLYESETLKSAKNGCCHQNSNVSVVASDLVDSSSQSLHETKSKIH------TNDPISPLGHSGASVFSECTPIGGYSFDEPHSAYILPGCKVKQEAVDWGTVKCFDKEE-NANEMLFSRPDFLLDSSCWFGHSTERGREHSVLTDAIGALLGEDF 541

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BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4ENA7 ((Uncharacterized protein {ECO:0000313|EMBL:THG18161.1}))

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 302/523 (57.74%), Postives = 366/523 (69.98%), Query Frame = 0

Query:    1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRL---RESELSLPGFGA----VHPALEQYNDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGN-SSSLPISWAMKLELPSLQYSHSQMGSWAS---PSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGA-DSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAED 507
            +SN T++SEDKM + D MDSPS EEA+S G + GGGLLKKGPWTSAEDAILVDYV +HGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDL+KG+FTPDEE+ IIELHAKMGNKWARMAAE+PGRTDNEIKN+WNTRIKRR RAGLPIYPPDI SQ+  EN    NMG F   ET +P+ L TN+ EIP VEFK L ++Q+LY P+  +IPA   L+ GL  S S+S+++S +HP KR    RESE  +P   +       A +QY DD                 SSS LP GSHAL+NGN SSS P+ WAM  ELPSLQYS +Q+GSW +    SPLPSL+SV TLIQ+P +E A+S   S +N+GLLE++LYES  LK++KN+ C  T N    A  A DS SQ      L +  W+   DP SPLGHST+SV+ ECTP+SG+S DEP  ++  P    KQE  DWV+ T  +  + N+  +   RPDFLL SNWFG S + G+++ +L D  G LL ED
Sbjct:   73 ISNMTSDSEDKM-SEDCMDSPSVEEASSIGKLGGGGLLKKGPWTSAEDAILVDYVNRHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLRKGAFTPDEEKTIIELHAKMGNKWARMAAEMPGRTDNEIKNYWNTRIKRRHRAGLPIYPPDI-SQALHENQQCQNMGTFPMVETHHPDLLSTNSFEIPLVEFKNLELDQQLYSPALPDIPASGLLAQGLGSSHSDSLMFSMLHPPKRFRESRESECLIPCVNSSTADYFRAFDQYPDDGCEKITQL---------SSSILP-GSHALLNGNFSSSEPMPWAMNPELPSLQYSDAQVGSWETGTPSSPLPSLDSVSTLIQSPSTEQAQSDSLSRRNSGLLEAVLYESHTLKSSKNSFCDLTSNVSVVAGDAMDSLSQ-----NLRETQWEIHSDPISPLGHSTSSVFSECTPISGSSFDEPHSVEIFPECLAKQEAVDWVT-TKCDVNEENANQMMFLRPDFLLASNWFGHSTERGREHSVLNDTRGTLLGED 577

[Close]

BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A291EX61 ((Transcription factor GAMYB {ECO:0000313|EMBL:ATG24457.1}))

HSP 1 Score: 508.064 bits (1307), Expect = 2.120e-174
Identity = 284/526 (53.99%), Postives = 355/526 (67.49%), Query Frame = 0

Query:    1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY---PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF----GAVHPALEQYND-DFQTASKSFRT-SYDHDISSSSYLP----SGSHALINGNSSSL-PISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLPVKQEKPDWVSMTNGNETDGNS--RHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            MS+ TNESED M +  + DSPSTEE TS GNM GG  LKKGPWTSAEDAILVDYV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG F+P+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKR QRAGLPIYPP++  Q+ + +  S  +G   +G+T +P+ L T+N EIP V FK L + +      P+ +++PA + +  G+  S S + ++  +H  KRLRESE   PG      +  P   QY D   +  S  F +  YD DI++   LP    SGSHAL+NGNSSS  PI+ A+KLELPSLQYS ++  SW +P SPLPSLESVDTLIQ+PP+E  +S   SP++NGLLE++LYES  LK++K   C +T +T         S  L+        +W++ GDPNSPL  S +SV+ E TP+S +S DEP L++T+   + KPD V+  +  +         +  SRPD LLD +WFG       D  I  DAI ALL ED++
Sbjct:    1 MSSMTNESEDNM-SKGHQDSPSTEE-TSGGNMGGGAHLKKGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGPFSPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVRMQAQNVSQESQIIGTLPTGDTSSPDILKTDNFEIPDVGFKNLELTRGFLSYSPTLLDMPASSMVKQGVHSSYSYNFMFPTIHSPKRLRESETLFPGLDDSVSSGLPVFHQYVDYACENMSDPFLSFPYDSDINAYDQLPLDVISGSHALLNGNSSSSEPIAGALKLELPSLQYSETRQDSWGTPASPLPSLESVDTLIQSPPTEQTQSECLSPRSNGLLEAVLYESETLKSSKKYLCPKTWDTSVMPGDVVDSPPLNPCK----TEWEAKGDPNSPLARSASSVFSERTPISASSSDEPHLVETMLGCEVKPDMVNRVSTQDVQKKKIRYQMEFSRPDALLDLSWFGHGNGCVNDQSIPTDAIAALLGEDIS 520

[Close]

BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TCX0 ((transcription factor GAMYB-like isoform X2 {ECO:0000313|RefSeq:XP_011080498.1, ECO:0000313|RefSeq:XP_011080499.1}))

HSP 1 Score: 508.064 bits (1307), Expect = 2.766e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYP---------SFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGAVH----PALEQY-NDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP-VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            T+ES ++    + +DSP+ ++A S G + G G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+F+P+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDI  +   EN  S ++  FSSG++  P+F+P NN EIP+VEFK L +NQ+LYP           +++PA + L+ GL PS  N  L S +HP+KRLR SE   PG  A      P   QY ND     ++SF  S  +D +S S + SGSHA++NGN SS    WAMKLELPSLQ   +Q+G W SP SPLP+LESVDTLIQTPP+EH  S  H P+N+GLL+++LYES+ +K  K +S       D   +  D+SSQ       H+ DW++ G+  +PLGHS++S++ E TP +GNS DEPQ ++T+P  K E+    +M + N+ +  + ++  SRPD L  S+ + LS     D+ +L+DAIG LL +D++
Sbjct:    4 TSESNERSMPKNGVDSPAADDANSGGYVGGHGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFSPEEERLIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDISLRPSKENQQSDDISSFSSGDSHYPDFMPVNNFEIPAVEFKNLELNQQLYPPALLDIPATGLLDVPASSLLAQGLPPSYPNKSLLSTIHPSKRLRGSEPLFPGLCATMGNSIPGRSQYQNDGPMQIAQSFINSSAYDHTSFSSVLSGSHAILNGNPSSSEPDWAMKLELPSLQ---TQVGGWGSPSSPLPNLESVDTLIQTPPTEHTLSYDHPPRNSGLLDAVLYESQTMKQPKYSSH----LADMLVDIMDTSSQY-----FHETDWEAYGESTTPLGHSSSSIFSESTPTNGNSFDEPQSVETIPGCKLEE----TMQSDNKAE-TTNNMIFSRPDLLPASDCYSLSEGPTMDHSLLKDAIGTLLVDDLS 507

[Close]

BLAST of DCAR_006329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T8E7 ((transcription factor GAMYB-like isoform X1 {ECO:0000313|RefSeq:XP_011080497.1}))

HSP 1 Score: 508.064 bits (1307), Expect = 3.748e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0

Query:    5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYP---------SFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGAVH----PALEQY-NDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP-VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
            T+ES ++    + +DSP+ ++A S G + G G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+F+P+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDI  +   EN  S ++  FSSG++  P+F+P NN EIP+VEFK L +NQ+LYP           +++PA + L+ GL PS  N  L S +HP+KRLR SE   PG  A      P   QY ND     ++SF  S  +D +S S + SGSHA++NGN SS    WAMKLELPSLQ   +Q+G W SP SPLP+LESVDTLIQTPP+EH  S  H P+N+GLL+++LYES+ +K  K +S       D   +  D+SSQ       H+ DW++ G+  +PLGHS++S++ E TP +GNS DEPQ ++T+P  K E+    +M + N+ +  + ++  SRPD L  S+ + LS     D+ +L+DAIG LL +D++
Sbjct:   14 TSESNERSMPKNGVDSPAADDANSGGYVGGHGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFSPEEERLIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDISLRPSKENQQSDDISSFSSGDSHYPDFMPVNNFEIPAVEFKNLELNQQLYPPALLDIPATGLLDVPASSLLAQGLPPSYPNKSLLSTIHPSKRLRGSEPLFPGLCATMGNSIPGRSQYQNDGPMQIAQSFINSSAYDHTSFSSVLSGSHAILNGNPSSSEPDWAMKLELPSLQ---TQVGGWGSPSSPLPNLESVDTLIQTPPTEHTLSYDHPPRNSGLLDAVLYESQTMKQPKYSSH----LADMLVDIMDTSSQY-----FHETDWEAYGESTTPLGHSSSSIFSESTPTNGNSFDEPQSVETIPGCKLEE----TMQSDNKAE-TTNNMIFSRPDLLPASDCYSLSEGPTMDHSLLKDAIGTLLVDDLS 517


Match Name	Stats	Description
A0A5B6YVZ8	E-Value: 0.000e+0, PID: 60.98	(Uncharacterized protein {ECO:0000313\|EMBL:MPA3606... [more]
A0A5J5BS28	E-Value: 0.000e+0, PID: 60.38	(Uncharacterized protein {ECO:0000313\|EMBL:KAA8544... [more]
A0A6P6TSY0	E-Value: 0.000e+0, PID: 57.95	(transcription factor GAMYB-like {ECO:0000313\|RefS... [more]
A0A068UQ74	E-Value: 0.000e+0, PID: 57.75	(Uncharacterized protein {ECO:0000313\|EMBL:CDP0973... [more]
A0A6A4M096	E-Value: 0.000e+0, PID: 56.47	(Uncharacterized protein {ECO:0000313\|EMBL:KAE9462... [more]
A0A834G082	E-Value: 0.000e+0, PID: 56.10	(Uncharacterized protein {ECO:0000313\|EMBL:KAF7120... [more]
A0A4S4ENA7	E-Value: 0.000e+0, PID: 57.74	(Uncharacterized protein {ECO:0000313\|EMBL:THG1816... [more]
A0A291EX61	E-Value: 2.120e-174, PID: 53.99	(Transcription factor GAMYB {ECO:0000313\|EMBL:ATG2... [more]
A0A6I9TCX0	E-Value: 2.766e-174, PID: 54.13	(transcription factor GAMYB-like isoform X2 {ECO:0... [more]
A0A6I9T8E7	E-Value: 3.748e-174, PID: 54.13	(transcription factor GAMYB-like isoform X1 {ECO:0... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.