Resource Type:
Polypeptide
Name:
DCAR_006991
Identifier:
DCAR_006991.mRNA-protein
Sequence:
MGSSRELLEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLS
LQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNG
VDCAEAFSFSQEALSGPLCSENKSTVSKTTSTNHCNFKEFVPNFKEVVNQ
DASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQ
TQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIAQTGASLY
GNVAPALTTEHENNASRSSVHHFPPFHSPFTPVQNPQSDCHSLLPIPATF
TSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVGKMENTGPSMEA
LAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTMENNEARVSNDK
SGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNI
KLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEK
HDKEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSR
EVLPQSFASPYCHQKYSIGEDKQHLYKEENERLQIDINSKACGSNEFVEH
NVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAAS
TINLEEGKAPKKMRLEGGASL*
Sequence Length:
672
Sequence Checksum:
9e9f9e21c9773d193e74a263fccaef3c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_006991, derives from mRNA, DCAR_006991. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z5J1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39118.1}) (Fragment))
HSP 1 Score: 503.056 bits (1294), Expect = 2.313e-167
Identity = 351/707 (49.65%), Postives = 450/707 (63.65%), Query Frame = 0
Match: A0A5B6Z5J1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39118.1}) (Fragment))
HSP 1 Score: 503.056 bits (1294), Expect = 2.313e-167
Identity = 351/707 (49.65%), Postives = 450/707 (63.65%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIA----------------QTGA-----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLC----TSFNATCSAAPTITTTMENNEARVSNDKSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKACG---SNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQA+DI IPPPRPKRKPSNPYPR TSVG+ +LQ GTK+G S +LDLEK+ EK +++ K+N++ + E F+ QEA L NK + ++ T N C F EFVP KEV+NQD ++ESY+T + G + + D KQ V + S + LGN +P H+KL+Q +K +E P N+G L S DMQA +YPRHVPVH+++GS + Q G SL+ + A + TTEH NNASR S H FP FH FTPV+N Q D S L I +TF+SL+ S LL+NPAAHAAASFAA FWP NV+ SAD G + N PSM A+AAATV+AATAWW + GLLP+C TSF TC+ A +N +A +N++ E+ D L+DQQL+P+ SE L + A KS LSSS+S E E K N +L++ + E+A A+T+ D +KTK +K +DRSSCGSNT SSSEVE DALEKH+ KEE+ EPD S DS NRRGR CSN N+SWKEVSE GRLAFQALFSREVLPQSF+ P+ QK +I DKQ+ ++ + +D+NSK G S++ VE+N+ L G +N EG L+ GLG K ++ RTGF PYKRCSVEAKESR+A+AS+ E G PK++RLEG AS
Sbjct: 7 LEKEALVKGVPIGQALDIGIPPPRPKRKPSNPYPRNTSVGASTLQVGTKNGKLSTPVSSLCPDKQILDLEKEPLPEKPGGDKKPRYAKENKDEDNDTEVFTLFQEAPCTFLSPANKKFMPTQVTPRNSCTFTEFVPMTKEVINQDETNESYITAETKGNQRLVKLDPKQKVRNNGTSNISNLGNSNPLHEKLVQGKKTDEQSQPENFGALPSNDMQATQNYPRHVPVHVLDGSQGMNAQNVSPDMSYPESMFHQMGGVHGHPSLFASPAASATTEHHNNASRYSSHQLFPAFHPLFTPVRNNQDDYRSFLHISSTFSSLIVSTLLQNPAAHAAASFAATFWPCTNVEASADSPAGGLGGLPSRQMNPAPSMAAIAAATVAAATAWWTAHGLLPVCAPLHTSF--TCTPASATAAPTDNGQAAAANNERRESTHDPPLQDQQLDPENSEALQERHWASKSITLSSSDSEESEGAKPNSELTSANHEKAAAITELHDSNKTKSRKQLDRSSCGSNTPSSSEVEIDALEKHEKGKEESKEPDASHLAGDSNNRRGRSCSNTNDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLKNKGQQKNTIERDKQNEDEKVEDGSHLDLNSKTWGTFSSDQGVENNLFLRGENNGEEGLLTMGLGHGKLESHRTGFMPYKRCSVEAKESRLASASSQGEERG--PKRIRLEGEAS 709
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z4J7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39120.1}))
HSP 1 Score: 501.901 bits (1291), Expect = 3.692e-166
Identity = 349/706 (49.43%), Postives = 455/706 (64.45%), Query Frame = 0
Match: A0A5B6Z4J7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39120.1}))
HSP 1 Score: 501.901 bits (1291), Expect = 3.692e-166
Identity = 349/706 (49.43%), Postives = 455/706 (64.45%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTVSKTTSTNH-CNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIA----------------QTGA-----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNA--TCSAAPTITTTMENNEARVSNDKSGENPA-DLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKACG---SNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQA+DI+IPPPRPKRKPSNPYPRKT VG+ + Q G KDG S S +LDLEK+ EK +++ K+NQ+ +C+E F+ QEA L S NK+++ + + C F+EFVP KEV+NQD ++ESY+T + G + DTKQ V + S T+ LGN +P H+KL+Q +K ++ PP N+G L S DMQA +YPRHVPVH+++GS+ ++ Q G +L+ + A + TTE NNASRSS+HH FP FH FTPV N Q D S L ++F+SL+ S+LL+NPAAHAAA FAA FWP ANV+ S D G + N PSM A+AA TV+AATAWWA+ GLLPLC A TC+ A +N +A +N + E+ + D L+DQQL+P+ SE L + +A KS LSSS+S E E K L++ + E+A A+T+ D +KTK +K +DRSSCGSNT SSSEVE DALEKH+ KEE+ EPD S DS NRRGR CSN N+SWKEVSE GRLAFQALFSREVLPQSF+ P+ QK +I DKQ+ ++ + +D+NSK G S++ VE+N+ L G +N EG L+ GLG K ++ RTGF PYKRCSVEAKESR+A+AS+ E G PK++RLEG AS
Sbjct: 72 LEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTGVGAPTPQVGAKDGKLSTSVSSSWHGKQILDLEKEPLPEKPGGDERTSNAKENQDEDNCSEVFTLFQEAPCTSLSSANKNSMQTPVAPRYSCTFREFVPMMKEVINQDETNESYVTAEPKGNQKFVTLDTKQKVHNNGTSNTSNLGNSNPLHEKLVQGKKTDKQSPPENFGALPSNDMQATQNYPRHVPVHVLDGSIGMSAQSTSPDMSYQKSIFHQMGGVHGHPNLFTSPAASATTEQNNNASRSSIHHLFPTFHPLFTPVCNSQDDNRSFLHTSSSFSSLIVSSLLQNPAAHAAACFAATFWPCANVEASVDSPAGGLGGFPSRQMNPAPSMAAIAAVTVAAATAWWAAHGLLPLCAPLPAGFTCTPATATAAPTDNGQAAAANFERRESTSHDPPLQDQQLDPENSEALQEQHSASKSITLSSSDSEECEGAKPITGLTSANHEKAAAITELHDSNKTKSRKQLDRSSCGSNTPSSSEVEIDALEKHEKGKEESKEPDASHLAGDSNNRRGRSCSNTNDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLKNKGQQKNTIERDKQNEDEKVEDGSHLDLNSKTWGTFSSDQGVENNLFLRGENNGEEGLLTMGLGHGKLESHRTGFMPYKRCSVEAKESRLASASSQGEERG--PKRIRLEGEAS 775
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IFH0 ((Protein LHY {ECO:0000313|EMBL:RVW95488.1}))
HSP 1 Score: 470.315 bits (1209), Expect = 1.165e-154
Identity = 333/706 (47.17%), Postives = 438/706 (62.04%), Query Frame = 0
Match: A0A438IFH0 ((Protein LHY {ECO:0000313|EMBL:RVW95488.1}))
HSP 1 Score: 470.315 bits (1209), Expect = 1.165e-154
Identity = 333/706 (47.17%), Postives = 438/706 (62.04%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIAQTGAS--------------------LYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTM---ENNEARVSNDKSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQ-AEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKA---CGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQ IDIEIPPPRPKRKPSNPYPRKT V + +LQAGTKDG L S S +LDLEK E+ S +++ +NQ+ +C+E F+ QEA + S NK+++ + N C F+EFVP KE QD ++ESY+T++ G + + D +Q D S+T+ L N HP+H+KL+Q +K +E N+G +MQAA ++PRHVPVH+++GSL + S L+ N A + TTEH+NN SRSS+H FP FH+PF P+++ Q D S L I +TF+SL+ S LL+NPAAHAAASFAA FWP +N++ SAD G + N PSM A+AAATV+AATAWWA+ G+LP C + + AP T++ +A +N + EN + +DQQL+ +CSE L +A KSP +SSS+S E K N + + D E+ AVT+ D +K K +K VDRSSCGSNT SSSEVETDALEKH+ +EE E D++ ++ NRR R SNLNESWKEVSE GRLAF+ALFSREVLPQSF+ P+ Q E++Q ++ LQ+D+NSKA C S++ VE N L N EG L+ GLG K K RRTGFKPYKRCSVEA +SRV + E+G PK++RLEG AS
Sbjct: 16 LEKEALVKGVPIGQGIDIEIPPPRPKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSSHPGKQILDLEKDPLPERPSGDEKPGNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSKQDETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKTSNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGMCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAASATTEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTLLQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATAWWAAHGVLPFCAPLHTGFTCAPASATSVPPTNTGQAPAANTERREN----TPQDQQLDLECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRKQVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSNLNESWKEVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNSKAWGPCSSHQDVEKN-GLMENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSRVTNCCSQGEEKG--PKRIRLEGDAS 714
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I2Z4 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61311.1}))
HSP 1 Score: 466.848 bits (1200), Expect = 1.314e-152
Identity = 333/706 (47.17%), Postives = 439/706 (62.18%), Query Frame = 0
Match: F6I2Z4 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61311.1}))
HSP 1 Score: 466.848 bits (1200), Expect = 1.314e-152
Identity = 333/706 (47.17%), Postives = 439/706 (62.18%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLE----------------IAQTGA----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTM---ENNEARVSNDKSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQ-AEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKA---CGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQAIDIEIPPPRPKRKPSNPYPRKT V + +LQAGTKDG L S S +LDLEK E+ S +++ +NQ+ +C+E F+ QEA + S NK+++ + N C F+EFVP KE NQD ++ESY+T++ G + + D +Q D S+ + L N HP+H+KL+Q +K +E N+G +MQAA ++PRHVPVH+++GSL + Q G +L+ N A + TEH+NN SRSS+H FP FH+PF P+++ Q D S L I +TF+SL+ S LL+NPAAHAAASFAA FWP +N++ SAD G + N PSM A+AAATV+AATAWWA+ G+LPLC + + AP T++ +A +N + EN + +DQQL+ +CSE L +A KSP +SSS+S E K N + + D E+ AVT+ D +K K +K VDRSSCGSNT SSSEVETDALEKH+ +EE E D++ ++ NRR R S LNESWKEVSE GRLAF+ALFSREVLPQSF+ P+ Q E++Q ++ LQ+D+NSKA C S++ VE N L N EG L+ GLG K K RRTGFKPYKRCSVEA +SRV + E+G PK++RLEG S
Sbjct: 72 LEKEALVKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSSHPGKQILDLEKDPLPERPSGDEKPGNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSNQDETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGTCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAASAATEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTLLQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATAWWAAHGVLPLCAPLHTGFTCAPASATSVPPTNTGQAPAANTERREN----TPQDQQLDLECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRKQVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSILNESWKEVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNSKAWGPCSSHQDVEKN-GLMENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSRVTNCCSQGEEKG--PKRIRLEGDVS 770
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BPZ1 ((Uncharacterized protein {ECO:0000313|EMBL:CAN81352.1}))
HSP 1 Score: 465.307 bits (1196), Expect = 5.874e-151
Identity = 333/706 (47.17%), Postives = 439/706 (62.18%), Query Frame = 0
Match: A5BPZ1 ((Uncharacterized protein {ECO:0000313|EMBL:CAN81352.1}))
HSP 1 Score: 465.307 bits (1196), Expect = 5.874e-151
Identity = 333/706 (47.17%), Postives = 439/706 (62.18%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLE----------------IAQTGA----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTM---ENNEARVSNDKSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQ-AEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKA---CGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQAIDIEIPPPRPKRKPSNPYPRKT V + +LQAGTKDG L S S +LDLEK E+ S +++ +NQ+ +C+E F+ QEA + S NK+++ + N C F+EFVP KE NQD ++ESY+T++ G + + D +Q D S+ + L N HP+H+KL+Q +K +E N+G +MQAA ++PRHVPVH+++GSL + Q G +L+ N A + TEH+NN SRSS+H FP FH+PF P+++ Q D S L I +TF+SL+ S LL+NPAAHAAASFAA FWP +N++ SAD G + N PSM A+AAATV+AATAWWA+ G+LPLC + + AP T++ +A +N + EN + +DQQL+ +CSE L +A KSP +SSS+S E K N + + D E+ AVT+ D +K K +K VDRSSCGSNT SSSEVETDALEKH+ +EE E D++ ++ NRR R S LNESWKEVSE GRLAF+ALFSREVLPQSF+ P+ Q E++Q ++ LQ+D+NSKA C S++ VE N L N EG L+ GLG K K RRTGFKPYKRCSVEA +SRV + E+G PK++RLEG S
Sbjct: 158 LEKEALVKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSXHPGKQILDLEKDPLPERPSGDEKPGNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSNQDETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGTCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAASAATEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTLLQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATAWWAAHGVLPLCAPLHTGFTCAPASATSVPPTNTGQAPAANTERREN----TPQDQQLDLECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRKQVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSILNESWKEVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNSKAWGPCSSHQDVEKN-GLMENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSRVTNCCSQGEEKG--PKRIRLEGDXS 856
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z527 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39119.1}))
HSP 1 Score: 451.055 bits (1159), Expect = 2.439e-146
Identity = 347/715 (48.53%), Postives = 448/715 (62.66%), Query Frame = 0
Match: A0A5B6Z527 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39119.1}))
HSP 1 Score: 451.055 bits (1159), Expect = 2.439e-146
Identity = 347/715 (48.53%), Postives = 448/715 (62.66%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTVSKTTSTNH-CNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIA----------------QTGA-----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNA--TCSAAPTITTTMENNEARVSNDKSGENPA-DLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEV-ETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKACG---SNEFVEHNVSLTGGSNEGE--------GTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQA+DI+IPPPRPKRKPSNPYPRKT VG+ + Q G KDG S S +LDLEK+ EK +++ K+NQ+ +C+E F+ QEA L S NK+++ + + C F+EFVP KEV+NQD ++ESY+T + G + DTKQ V + S T+ LGN +P H+KL+Q +K ++ PP N+G L S DMQA +YPRHVPVH+++GS+ ++ Q G +L+ + A + TTE NNASRSS+HH FP FH FTPV N Q D S L ++F+SL+ S+LL+NPAAHAAA FAA FWP ANV+ S D G + N PSM A+AA TV+AATAWWA+ GLLPLC A TC+ A +N +A +N + E+ + D L+DQQL+P+ SE L + A KS LSSS+S E E K N +L++ + E+A AVT+ QD + TK +KL+DRSSCGSNT SSSEV ETDALEKH+ KEE+ EPD S DS NRRG+ SN +SWKEVSE GRLAFQALFSREVLPQSF+ + HQ + +KQ+ ++ + +D+NSK G S++ V +NV L G +N E L GLG K K RTGFKPYKRCSVEAKESR ST + E K PK++RLEG AS
Sbjct: 72 LEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTGVGAPTPQVGAKDGKLSTSVSSSWHGKQILDLEKEPLPEKPGGDERTSNAKENQDEDNCSEVFTLFQEAPCTSLSSANKNSMQTPVAPRYSCTFREFVPMMKEVINQDETNESYVTAEPKGNQKFVTLDTKQKVHNNGTSNTSNLGNSNPLHEKLVQGKKTDKQSPPENFGALPSNDMQATQNYPRHVPVHVLDGSIGMSAQSTSPDMSYQKSIFHQMGGVHGHPNLFTSPAASATTEQNNNASRSSIHHLFPTFHPLFTPVCNSQDDNRSFLHTSSSFSSLIVSSLLQNPAAHAAACFAATFWPCANVEASVDSPAGGLGGFPSRQMNPAPSMAAIAAVTVAAATAWWAAHGLLPLCAPLPAGFTCTPATATAAPTDNGQAAAANFERRESTSHDPPLQDQQLDPENSEALQERHWASKSITLSSSDSEESEGAKPNSELTSANHEKAAAVTELQDSNMTKSRKLMDRSSCGSNTPSSSEVEETDALEKHEKGKEESKEPDASHAAGDSNNRRGKSSSNTIDSWKEVSEEGRLAFQALFSREVLPQSFSPQHDLKNKGHQNNNSEREKQNADEKVEDGSHLDLNSKMWGPFSSDQGVGNNVFLRGENNRTEGLLTMGLGLGLGLGLGLGKLKGHRTGFKPYKRCSVEAKESR--GPSTSSQGEEKGPKRIRLEGEAS 784
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q1B8 ((Protein LHY like {ECO:0000313|EMBL:PSS00200.1}))
HSP 1 Score: 446.817 bits (1148), Expect = 8.653e-145
Identity = 333/709 (46.97%), Postives = 440/709 (62.06%), Query Frame = 0
Match: A0A2R6Q1B8 ((Protein LHY like {ECO:0000313|EMBL:PSS00200.1}))
HSP 1 Score: 446.817 bits (1148), Expect = 8.653e-145
Identity = 333/709 (46.97%), Postives = 440/709 (62.06%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTVSKTTSTNH-CNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLE----------------IAQTGA-----SLYGN-VAPALTTEHENNASRSSV-HHFPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTMENNE--ARVSND-KSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKH--DKEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPYC-----HQKYSIGEDKQHLYKEENER-LQIDINSK---ACGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAK-ESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEA+V+G G+A+DIEIPPPRPKRKPSNPYPRKT VG+ +LQ KDG +L S ++ +LDLE++ EK +++ + N + +C+E + QE L S NK ++ + + + C F++FVP V +D ++ES T++ G K++V L S+T+ L N +P+H+KL+Q +K+NE P N+G L DMQA+ +YPRHVPVH++NG+L Q G +L+ N A A +TE N SRSS+ FPPFH FTPV+N Q D S L + +TF SL+AS LL+NPAAHAAA+FAA FWP ++ SAD VG + N PS+ A+AAATV+AATAWWAS GLL +CT F+ + P TT + A ND KS + P+DL L++QQL+P+ SE L + +A KSP LSSS+S E E E + +L+ E + T+ D +K KD+K VDRSSCGSNTASSS+VETDALEKH DKEE EPD+S DS NRR R + N+SWKEVSE GRLAF+ALFSR+VLPQSF+ P+ +QK ++ D+ E+ E +Q+D+N K AC S++ VE + L G N+GEG L LG + K RTGFKPYKRCSVEAK ES VA AS N E K PK++RLEG AS
Sbjct: 72 LEKEAVVKGVPMGRALDIEIPPPRPKRKPSNPYPRKTGVGTPTLQVRAKDGKNLSPISSNCTSKQILDLEREPLPEKPCGDEKPGNAEGNLDEGNCSEVLTLFQEDPCTSLSSANKDSMPTSVTPRYSCTFRDFVPMM--VHTEDETNESCATVEPKG--------NKKMV-KLDASDTSNLENSNPSHEKLVQGKKINERSLPENFGALPPSDMQASQNYPRHVPVHVLNGTLGNITENVSPDMSFQESIFHQMGGVHPHPNLFINPAASAASTEQHINTSRSSIPQSFPPFHPLFTPVRNNQVDYQSDLHLSSTFLSLIASTLLQNPAAHAAANFAATFWPCTTMEASADSPVGNAGGFPSRQMNPSPSVAAIAAATVAAATAWWASHGLLSMCTPFHTGFTCTPETTTATLEDAGLAAAGNDGKSEKPPSDLPLQNQQLDPEYSEALQEQHSASKSPTLSSSDSEECEGENPSFELTAAKQENTASATELHDSNKIKDKKQVDRSSCGSNTASSSDVETDALEKHEKDKEELKEPDISHAAGDSNNRRSRSSCSTNDSWKEVSEEGRLAFRALFSRQVLPQSFSPPHDLKNKEYQKMNVEMDRPPDTNEKAEDAMQLDLNFKIWGACSSHQLVEKSKFLR-GENDGEGLLRMELGYGRLKPCRTGFKPYKRCSVEAKEESNVATAS--NQGEEKCPKRIRLEGEAS 766
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1W6GWM3 ((LHY {ECO:0000313|EMBL:ARM20189.1}))
HSP 1 Score: 441.039 bits (1133), Expect = 1.358e-142
Identity = 333/706 (47.17%), Postives = 433/706 (61.33%), Query Frame = 0
Match: A0A1W6GWM3 ((LHY {ECO:0000313|EMBL:ARM20189.1}))
HSP 1 Score: 441.039 bits (1133), Expect = 1.358e-142
Identity = 333/706 (47.17%), Postives = 433/706 (61.33%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAA--HVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTVSKTTS-TNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEI----------------AQTGA-----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNA--TCSAAPTITTTMENNEARVSNDKSGENPA-DLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEA---VTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKH--DKEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPYCHQKYSIGEDKQHLYKEENERLQIDINSK---ACGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G QAIDIEIPPPRPKRKPSNPYPRKT V + SLQ G KDGN+ S S +A +LDLE++ EK +++ E K+NQ+ + +E + QEA L S +K ++ + N C F+EFVP V QD ++ESY+T++ G + + D KQ V D + T+ L + P+H+KL+Q +K +E+ P N+G L S DMQA +YPRHVPVH++NGSL + Q G + + N A + TTEH NA RSS H FPPFH FTP++N Q D S L +TF++L+AS LL+NPAAHAAASFAA FWP N++ S V + N PSM A+AAATV+AA AWWA+ GLLP+CT F+ TC+ A T T A N+ EN DL LK+ QL P+ SE + +A KSP LSSS+S E E K N L+ D +A VT D +K K +K VDRSSCGSNT SSS+VETDAL+KH DKEE EPD+S DS NRRGR +N+SWKEVSE GRLAF+ALFSR+VLPQSF+ P ++KQ+ ++ + ++D+NS C S++ V++N L N G G L+ LG K K RTGFKPYKRCSVEAK+S+VA+ ++ EE + PK++RLEG AS
Sbjct: 72 LEKEALVKGVPIRQAIDIEIPPPRPKRKPSNPYPRKTGVATPSLQVGAKDGNNSSSVSSSCTATGKQILDLEREPLPEKPDGDEKQENAKENQDEGNFSEVLTLFQEAPCTSLSSVDKDSIRTLAAPRNSCTFREFVPMM--VSTQDETNESYVTVEPRGIQKLVKFDAKQTVQDNGTNYTSNLESSIPSHEKLVQGKKTDEMCHPENFGALPSSDMQATHNYPRHVPVHVLNGSLGMNTENVSSDMSCQESIFHQIGGIHGCPNPFSNPAASATTEHHVNAPRSSTHQQFPPFHPLFTPIRNDQDDYQSYLHFASTFSNLIASTLLQNPAAHAAASFAATFWPSTNMEASGLSPVDTLGGFPLRQMNPAPSMAAIAAATVAAAAAWWAANGLLPVCTPFHTGFTCTPASTTATPTNVGLAAAGNNDKRENALHDLPLKNPQLNPEYSEARQEQHSASKSPTLSSSDSEESEGAKPNTGLTAADDHDEKAAAVVTDLHDSNKAKSRKRVDRSSCGSNTPSSSDVETDALQKHEKDKEEPIEPDVSHPAGDSNNRRGRSSCIINDSWKEVSEEGRLAFRALFSRKVLPQSFSPPQ--------DNKQNADEKAEDASRLDLNSMMWGTCPSHQVVQNNTFLR-SENHGGGLLTMELGHGKLKPHRTGFKPYKRCSVEAKQSKVASTASSQGEE-QCPKRIRLEGEAS 765
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZCR5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516230.1}))
HSP 1 Score: 441.039 bits (1133), Expect = 2.303e-142
Identity = 329/711 (46.27%), Postives = 429/711 (60.34%), Query Frame = 0
Match: A0A5J4ZCR5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516230.1}))
HSP 1 Score: 441.039 bits (1133), Expect = 2.303e-142
Identity = 329/711 (46.27%), Postives = 429/711 (60.34%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLEIA----------------QTGA-----SLYGNVAPALTTEHENNASRSSVHH-FPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSAD-PHVG------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTMENNEARVSNDKSG---------ENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKHD--KEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY-----CHQKYSIGEDKQHLYKEENERLQIDINSKACG--SNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAKESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G GQA DI IPPPRPKRKPSNPYPRK SVG+ + Q G KDG L S VLDLEK+ EK +++ K+N + + +E F+ QEA + N++++ + T N C F EFVP KEV+NQD ++ESY+T ++ G + + D KQ V + S T+ LG +P +KL+Q ++ +E P ++ L S DMQA +YPRHVPVH+++GS + Q G +L+ + A + TTEH NN SR S+H FP FH +PV N Q DC S I +TF+SL+ S LL+NPAAHAAASFAA FWP NV+ SAD P G + N PSM +AAATV+AATAWW + GLLP+C + + + P TT + + + E+ D L+DQQ + + SE L + A KS LSSS S E E K N L++ + E A VT+ QD +KTK +K +DRSSCGSNT SSSEVETDALEKH+ KEE NE D S DS NRRGR SN N+SWKEVSE GRLAFQALFSRE LPQSF+ P HQ + +D+Q+ ++ + +D+N K G S++ VE+NV L G + G L+ GLG K K +TGFKPYKRCSVEA+ESR+A+ S+ E+G PK++RLEG AS
Sbjct: 79 LEKEALVKGVPIGQARDIGIPPPRPKRKPSNPYPRKISVGAPTSQLGAKDGKLLTPVSSLCPGKQVLDLEKEPLPEKPGGDKKPRNTKENNDEGNDSEVFTLFQEAPCTFISPANRNSMPTPVTPRNSCAFTEFVPMKKEVINQDETNESYITAESKGNQKVVKLDAKQTVHNNGSSNTSNLGTSNPLDEKLVQGKETDEQGQPESFVALPSNDMQATQNYPRHVPVHVLDGSQGMNAQNVSPDMLYPGSIFHQMGGVHGHPNLFASPAASATTEHHNNGSRYSIHQLFPTFHPFISPVCNNQDDCRSFHHISSTFSSLIVSTLLQNPAAHAAASFAATFWPCTNVEASADSPEGGLGVFPSRQMNPAPSMAVIAAATVAAATAWWTAHGLLPVCAPLHTSFTCNPASTTAAPADNDQAAAANDQAAAANNPIRESTHDPLLQDQQPDTENSEALQEQHWASKSIILSSSYSEESEGAKPNSGLTSANHEIAAVVTELQDSNKTKSKKQIDRSSCGSNTPSSSEVETDALEKHEKGKEEPNELDASHGAGDSNNRRGRSSSNTNDSWKEVSEEGRLAFQALFSREKLPQSFSPPQDLKNKGHQNTNSEKDEQNADEKVEDGSHLDLNGKTWGTFSSDGVENNVFLRGENTREVGLLTMGLGHGKLKGHQTGFKPYKRCSVEAQESRMASTSSQGEEKG--PKRIRLEGKAS 787
BLAST of DCAR_006991 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QNZ8 ((Protein LHY like {ECO:0000313|EMBL:PSS11659.1}))
HSP 1 Score: 437.187 bits (1123), Expect = 4.832e-141
Identity = 330/709 (46.54%), Postives = 437/709 (61.64%), Query Frame = 0
Match: A0A2R6QNZ8 ((Protein LHY like {ECO:0000313|EMBL:PSS11659.1}))
HSP 1 Score: 437.187 bits (1123), Expect = 4.832e-141
Identity = 330/709 (46.54%), Postives = 437/709 (61.64%), Query Frame = 0
Query: 8 LEKEALVRGPSTGQAIDIEIPPPRPKRKPSNPYPRKTSVGSLSLQAGTKDGNHLISDFSQSSAAHVLDLEKKQTLEKQSANQQLEIVKKNQNGVDCAEAFSFSQEALSGPLCSENKSTV-SKTTSTNHCNFKEFVPNFKEVVNQDASHESYLTLKASGGRNDKEHDTKQLVGDLPPSETAKLGNYHPTHDKLLQTQKVNELKPPVNYGILSSYDMQAAAHYPRHVPVHIVNGSLE----------------IAQTGA-----SLYGN-VAPALTTEHENNASRSSV-HHFPPFHSPFTPVQNPQSDCHSLLPIPATFTSLVASALLENPAAHAAASFAARFWPVANVDPSADPHVG-------KMENTGPSMEALAAATVSAATAWWASQGLLPLCTSFNATCSAAPTITTTMENNE--ARVSND-KSGENPADLSLKDQQLEPKCSETLLDHQTAVKSPPLSSSESAEGESEKLNIKLSNVDPEQAEAVTKAQDLSKTKDQKLVDRSSCGSNTASSSEVETDALEKH--DKEEANEPDLSLQISDSTNRRGRICSNLNESWKEVSEGGRLAFQALFSREVLPQSFASPY------CHQKYSIGEDKQHLYKEENERLQIDINSK---ACGSNEFVEHNVSLTGGSNEGEGTLSTGLGCLKFKARRTGFKPYKRCSVEAK-ESRVAAASTINLEEGKAPKKMRLEGGAS 670
LEKEALV+G G+A+DIEIPPPRPKRKPSNPYPRKT VG+ + Q G KD +L+ S ++ +LDLE++ EK +++ ++N + +C+E + QEA S NK ++ + T N C F+EFVP + +D ++ES T++ G + + DT S T+ L N +P+H+KL+Q +K+NE P N+G L S +MQA+ +YPRH+PVH++NG+L Q G +L+ N A A +TE N SRSS+ FPPFH FTP++N Q D S L + +TF+SL+ S +L+NPAAHAAASFAA FWP N + SAD VG + N S+ A+AAATV+AATAWWAS GLL + T F+ + P TT + A ND KS + P DL L++QQL+ + SE L + +A KSP LSSS+S E E EK + +L+ E +VT+ D +KTK +K VDRSSCGSNTASSS+VETDALEKH DKEE EPD+S DS NRR R S+ N+SWKEVSE GRLAF+ALFSR+VLPQSF SP HQK ++ +D ++ + Q+D+N K AC +++ VE + L G N+GEG L LG + K TGFKPYKRCSVEAK ES VA+AS N E K PK++RLEG AS
Sbjct: 79 LEKEALVKGDPMGKALDIEIPPPRPKRKPSNPYPRKTGVGTPTPQVGAKDRKYLLPISSYCTSKQILDLEREPLHEKPGGDEKPGNAEENLDEGNCSEVLTLFQEAPCTSYSSANKDSMPTPVTPRNSCTFREFVPMM--IHTEDETNESCATVEPKGNKKMVKLDT---------SNTSNLENSNPSHEKLVQGKKINERNQPENFGALPSSNMQASQNYPRHIPVHVLNGTLGTITENVSPDMSFQESIFHQMGGVHPQPNLFINPAASAASTEQHINMSRSSIPQSFPPFHPLFTPIRNNQDDYQSYLHLSSTFSSLIVSTVLQNPAAHAAASFAAAFWPCTNKEASADSPVGHAGGCPSRQMNQSFSVAAIAAATVAAATAWWASHGLLSMGTPFHTGLTCTPETTTATPEDAGLAAAGNDGKSEKAPPDLPLQNQQLDTEYSEALQEQHSASKSPTLSSSDSEECEGEKPSFELTAAKQENTASVTELHDSNKTKGKKQVDRSSCGSNTASSSDVETDALEKHEKDKEELKEPDISYAAGDSNNRRSRSFSSNNDSWKEVSEEGRLAFRALFSRQVLPQSF-SPRQDLKNKGHQKKNVEKDSPETDEKAEDATQLDLNIKIWGACSNHQLVEKSTYLR-GENDGEGLLRMELGYGRHKPCWTGFKPYKRCSVEAKEESNVASAS--NQGEEKYPKRIRLEGEAS 772
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6Z5J1 | E-Value: 2.313e-167, PID: 49.65 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3911... [more] |
| A0A5B6Z4J7 | E-Value: 3.692e-166, PID: 49.43 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3912... [more] |
| A0A438IFH0 | E-Value: 1.165e-154, PID: 47.17 | (Protein LHY {ECO:0000313|EMBL:RVW95488.1})[more] |
| F6I2Z4 | E-Value: 1.314e-152, PID: 47.17 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6131... [more] |
| A5BPZ1 | E-Value: 5.874e-151, PID: 47.17 | (Uncharacterized protein {ECO:0000313|EMBL:CAN8135... [more] |
| A0A5B6Z527 | E-Value: 2.439e-146, PID: 48.53 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3911... [more] |
| A0A2R6Q1B8 | E-Value: 8.653e-145, PID: 46.97 | (Protein LHY like {ECO:0000313|EMBL:PSS00200.1})[more] |
| A0A1W6GWM3 | E-Value: 1.358e-142, PID: 47.17 | (LHY {ECO:0000313|EMBL:ARM20189.1})[more] |
| A0A5J4ZCR5 | E-Value: 2.303e-142, PID: 46.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8516... [more] |
| A0A2R6QNZ8 | E-Value: 4.832e-141, PID: 46.54 | (Protein LHY like {ECO:0000313|EMBL:PSS11659.1})[more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |