Resource Type:
Polypeptide
Name:
DCAR_007064
Identifier:
DCAR_007064.mRNA-protein
Sequence:
MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKS
KKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDL
VAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKM
KELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVW
MRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAE
NALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTAN
ISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGL
LNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTG
RGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFE
SLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE*
Sequence Length:
492
Sequence Checksum:
a543616ce0291608f4bc4739334a456c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_007064, derives from mRNA, DCAR_007064. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AKF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529611.1}))
HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 387/489 (79.14%), Postives = 431/489 (88.14%), Query Frame = 0
Match: A0A5J5AKF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529611.1}))
HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 387/489 (79.14%), Postives = 431/489 (88.14%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+FM +FGR+KSV KRSKK+LEEALYKRLFK+G E+SVRQQLN FLKS K+VYKWEV +L+ LR R FYPALKLSE+M +RG+N TVSDQAIHLDL+AK +GI+AAE YF+GLPETSKNHLTYGALLNCYCKE M EKAEALM+KMKEL L L++MPYNSLMTLYTKTGQPERIPAIIQEMK+ D++PDSYTYNVWMRALAAVNDISGVERVI++MKRDGRV DWTTYSNLASIYVDAG KA+NALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKDL GAEKCF +W+S+CSTYDIR+AN LI AY EGLL KA ELK +S+++GAKPNAKTWEIFL+YYL+ + KSAVDCVE AISTGRGDG KWIP EI L+GHFEQNKDVE AE F+E LKK+VD VG +VFESLIRTY AGRTNPIMRRR+KM+NV+LS EG KLLD VC E
Sbjct: 2 AFMQQFGRTKSVAKRSKKYLEEALYKRLFKNGGDEVSVRQQLNQFLKSSKRVYKWEVGQSLRTLRQRKLFYPALKLSETMVKRGMNMTVSDQAIHLDLMAKTRGITAAENYFIGLPETSKNHLTYGALLNCYCKELMIEKAEALMEKMKELKLSLSSMPYNSLMTLYTKTGQPERIPAIIQEMKACDVMPDSYTYNVWMRALAAVNDISGVERVIDEMKRDGRVTGDWTTYSNLASIYVDAGLFQKAKNALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVDLKDLPGAEKCFREWESSCSTYDIRVANILIDAYTKEGLLEKAEELKERSRRRGAKPNAKTWEIFLDYYLEHGEIKSAVDCVENAISTGRGDGGKWIPSPEIIGNLMGHFEQNKDVEGAEGFMEVLKKAVDVVGVEVFESLIRTYAVAGRTNPIMRRRLKMENVELSEEGKKLLDMVCVE 490
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CD39 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78830.1}) (Fragment))
HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 384/489 (78.53%), Postives = 432/489 (88.34%), Query Frame = 0
Match: A0A5B7CD39 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78830.1}) (Fragment))
HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 384/489 (78.53%), Postives = 432/489 (88.34%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+FM +FGR+KSV KRSKK+LEEALYKRLFKDGSSE+SVRQQLN F+KS K+VYKWEV +LKILR R RFYPALKLSE+M +RG+N TVSDQAIHLDL+AK +G++AAE YF+GLPETSKNHLTYGALLNCYCKE M EKAEALM+K+KEL L L++MPYNSLMTLYTKTGQPERIPAIIQEMK+ D++PDSYTYNVWMRALAA+NDISGVERVI++MKRDGRV DWTTYSNLASIYVDAG KAE ALKELEKRNA +DL AFQFLITL+GRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV L+DL GAEKCF +W+S CSTYDIR+ N LIGAY EGLL KA ELK +S+++G KPNAKTWEIFL+YYLK + KSAVDCVE AISTG+GDG KW+P EI L+GHFEQNKDVE AE FVE LKK+VDEVG +VFESLIRTY AG+T+PIMRRR+KM+NV+LS EG KLLD VC E
Sbjct: 28 AFMQQFGRTKSVAKRSKKYLEEALYKRLFKDGSSEVSVRQQLNQFVKSSKRVYKWEVGHSLKILRQRKRFYPALKLSETMVKRGMNMTVSDQAIHLDLIAKTRGVTAAETYFIGLPETSKNHLTYGALLNCYCKELMIEKAEALMEKIKELKLALSSMPYNSLMTLYTKTGQPERIPAIIQEMKACDVMPDSYTYNVWMRALAAINDISGVERVIDEMKRDGRVTGDWTTYSNLASIYVDAGVFEKAEKALKELEKRNAYRDLSAFQFLITLHGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLEDLPGAEKCFREWESGCSTYDIRVTNVLIGAYTKEGLLEKAEELKERSRRRGVKPNAKTWEIFLDYYLKNGEIKSAVDCVENAISTGKGDGGKWVPSPEIIGNLMGHFEQNKDVEGAEGFVEILKKAVDEVGVEVFESLIRTYAVAGKTSPIMRRRLKMENVELSEEGKKLLDVVCVE 516
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RES2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS28511.1}))
HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 382/489 (78.12%), Postives = 434/489 (88.75%), Query Frame = 0
Match: A0A2R6RES2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS28511.1}))
HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 382/489 (78.12%), Postives = 434/489 (88.75%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+FM +F ++KSV KR K+LEEALYKRLFK+GSSE+SVRQQLN FLKSKK+VYKWEV +LKILR RNRFYPALKLSE+MAERG+NKTVSD AIHLDL+AKA+GI+AAEAYFV LPETSKNHLTYGAL NCYCKE MTEKAEAL++KM EL LGLT+MPYNSLMTLYTKTGQPE+IPAIIQEMK+ DI+PDSYTYNVWMRALAAV DISGVERVI++MKRDGR+V DWTTYSNLASIYVDAG KAE+ALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKD+ GAEKCF +W+S CSTYDIR+AN LIGAY GLL KA ELK +++++G KPNAKTWEIFL+YYLK + KSAVDCV+ A+STGRGDG KWIP +I + L+ FEQNKDVESAE FVE +KK+VDE+G ++FE LIRTY A+G+T+PIMRRR+KM+NV+LS E KLLD VC E
Sbjct: 2 AFMQQFRKTKSVTKRGNKYLEEALYKRLFKEGSSEVSVRQQLNQFLKSKKRVYKWEVGHSLKILRHRNRFYPALKLSEAMAERGMNKTVSDHAIHLDLIAKARGIAAAEAYFVDLPETSKNHLTYGALFNCYCKELMTEKAEALLEKMNELKLGLTSMPYNSLMTLYTKTGQPEKIPAIIQEMKACDIMPDSYTYNVWMRALAAVGDISGVERVIDEMKRDGRIVGDWTTYSNLASIYVDAGLFEKAESALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDIPGAEKCFREWESGCSTYDIRVANVLIGAYAKAGLLEKAEELKERARRRGTKPNAKTWEIFLDYYLKNGEIKSAVDCVDNAVSTGRGDGGKWIPSPDIIRHLMLQFEQNKDVESAEGFVEIVKKAVDEIGVEIFEPLIRTYAASGKTSPIMRRRLKMENVELSEECKKLLDVVCVE 490
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G1X9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124002.1}))
HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 376/489 (76.89%), Postives = 435/489 (88.96%), Query Frame = 0
Match: A0A834G1X9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124002.1}))
HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 376/489 (76.89%), Postives = 435/489 (88.96%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+FM +F +KSV KRSKK+LEEALYKRLFK+GS E+SVRQQLN FLKS+K+VYKWEV +LKILRSRNRFYPALKLSE+MAERG+NKTVSD AIHLDL+AKA+G++AAEAYF+ LPETSKNHLTYG+LLNCYCKE MTEKAEAL++KM EL LGLT+MPYNSLMTLYTKTGQPERIP+IIQEMK+ DI+PDSYTYNVWMRALA+ DISGVERVI++MKRDGRV DWTTYSN+ASIY DAG KAENALKELEK+NAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAF KTANISYLNMIQVLV LKDL GAEKCF +W+S CSTYDIR+AN LI AY +GLL KA ELK +++++GAKPNAKTWEIFL+YYLK + KSAVDCV+ AIS+GRGDG KW+P ++ + L+ HFE+NKDVE AE FVE LKK++DEVG ++FESLIRTY AAG+T+PIMRRR+KM+NV+LS +KLLD VC+E
Sbjct: 2 AFMQQFKETKSVAKRSKKYLEEALYKRLFKEGSLEVSVRQQLNQFLKSRKRVYKWEVGHSLKILRSRNRFYPALKLSETMAERGMNKTVSDHAIHLDLIAKARGVAAAEAYFINLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMNELKLGLTSMPYNSLMTLYTKTGQPERIPSIIQEMKACDIMPDSYTYNVWMRALASGGDISGVERVIDEMKRDGRVTGDWTTYSNIASIYADAGLFGKAENALKELEKKNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFRKTANISYLNMIQVLVNLKDLPGAEKCFREWESGCSTYDIRVANVLIRAYAKDGLLEKAEELKERARRRGAKPNAKTWEIFLDYYLKIGEIKSAVDCVDNAISSGRGDGGKWVPSPDVVRNLMRHFEENKDVEGAEGFVEILKKALDEVGLEIFESLIRTYAAAGKTSPIMRRRLKMENVELSEGSMKLLDVVCAE 490
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DUW2 ((Uncharacterized protein {ECO:0000313|EMBL:THG07081.1}))
HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 376/487 (77.21%), Postives = 432/487 (88.71%), Query Frame = 0
Match: A0A4S4DUW2 ((Uncharacterized protein {ECO:0000313|EMBL:THG07081.1}))
HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 376/487 (77.21%), Postives = 432/487 (88.71%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVC 489
+FM +F +KSV KRSKK+LEEALYKRLFKDGSSE+SVRQQLN FLKSKK+V+KWEV +LKILR RNRFYPALKLSE+MAERG+NKTVSDQAIHLDLVAKA+GI+AAE YF+ LPETSKNHLTYGALLNCYCKE MTEKAEAL++KMKEL LGLT+MPYNSLMTLYTKTGQPE+IP I+QEMK+ DI+PDSYTYNVWMRALAAV+DISGVERVI++MKRDGRVV DWTTYSNLASIYVDAG KAE ALKELEKRNA +DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKDL GAEKCF +W+S CSTYDIR+AN LIGAY EGLL KA E K +++++G K N KTWEIFL+YYL+ + KSAV+CV+ AISTGRGDG KWIP EIT++ + +FE+NKDV+ AERF+ L+K+VDE+G++ FESLIR Y AAGRT+ ++RRR+KM+NV+LS + KLLD VC
Sbjct: 2 AFMQQFRETKSVAKRSKKYLEEALYKRLFKDGSSEVSVRQQLNQFLKSKKRVFKWEVGHSLKILRQRNRFYPALKLSETMAERGMNKTVSDQAIHLDLVAKARGIAAAETYFIELPETSKNHLTYGALLNCYCKELMTEKAEALLEKMKELKLGLTSMPYNSLMTLYTKTGQPEKIPTIVQEMKACDIMPDSYTYNVWMRALAAVSDISGVERVIDEMKRDGRVVGDWTTYSNLASIYVDAGLFEKAEKALKELEKRNARRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWESRCSTYDIRVANVLIGAYAREGLLEKAEEFKERARRRGGKSNVKTWEIFLDYYLRNGEIKSAVECVDNAISTGRGDGQKWIPSLEITKKFMQNFERNKDVDGAERFLGILEKAVDELGSEAFESLIRIYAAAGRTSQMLRRRVKMENVELSDDCKKLLDKVC 488
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UQC6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1202714.1}))
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 422/491 (85.95%), Query Frame = 0
Match: A0A6A1UQC6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1202714.1}))
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 422/491 (85.95%), Query Frame = 0
Query: 1 MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
MA +FGR+KSV KRSKK LEEALY RLF++G SE+SVR QLN FLKS K+VYKWEV DTLK LR R ++PALKLSE+M +RG+NKTVSDQA+HLDLV+K +GI+AAE YFVGLPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL LT+MPYNSLMTLY K GQPE+IPAIIQEMK+ +I+ DSYTYNVW+RALAAVNDI+ VERV+++MKRDGRV DWTTYSNLASIYVDAG KAE ALKELEKRNA KDL A+QFLITLYGRTGNLLEVYRVWRSLRLAFPKTAN SYLNMIQ LV LKDL GAEKCF +W+S CSTYDIRIANALIGAY EGLL KA ELK +++++GAKPNAKTWEIFLNYYLK +FK AVDCV A+S GRGDG KW+P + + L+GHFEQ KDV+SAE F+E LKK+VD +GA+VFESLIRTY AAGRT+P +RRR+KM+NV+++ +KLL+ +C E
Sbjct: 1 MALQQFQFGRTKSVAKRSKKFLEEALYTRLFREGGSEVSVRHQLNQFLKSHKRVYKWEVGDTLKKLRERKLYFPALKLSETMCKRGMNKTVSDQAVHLDLVSKTRGIAAAENYFVGLPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLTSMPYNSLMTLYLKNGQPEKIPAIIQEMKASNIMLDSYTYNVWIRALAAVNDIAVVERVVDEMKRDGRVAGDWTTYSNLASIYVDAGFLEKAEKALKELEKRNAYKDLSAYQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANTSYLNMIQALVNLKDLPGAEKCFREWESGCSTYDIRIANALIGAYAKEGLLEKAEELKERARRRGAKPNAKTWEIFLNYYLKSGEFKLAVDCVANAVSIGRGDGGKWVPPSVVVSSLMGHFEQEKDVDSAEGFLEILKKAVDNIGAEVFESLIRTYAAAGRTSPAIRRRLKMENVEVNEACMKLLETICVE 491
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EY89 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY91402.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 372/500 (74.40%), Postives = 421/500 (84.20%), Query Frame = 0
Match: A0A7J0EY89 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY91402.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 372/500 (74.40%), Postives = 421/500 (84.20%), Query Frame = 0
Query: 3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKL-----------SESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+FM KF ++KSV KR K+LEEALYK LFK+GSSE+SVRQQLN FLKSKK+VYKWEV +LKIL R+RF PALKL S E G+NKTVSD AIH+DL+AKA+GI+AAEAYF+ LPETSKNHLTYGAL NCYCKE +TEKAEAL++KM EL LGLT+M YNSLMTLYT+TGQPE+IPAIIQEMK+ DI+PDSYTYNVWMRALAAV DISGVERVI++MKRDGRV DWTTYSNLASIYVDAG KAE ALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LK + GAEKCF +W+S CSTYDIR+AN LIGAY GLL KA ELK Q++++G KPNAKTWEIFL+YYLK + KSAVDCV+ AISTGRGDG KWIP +I + L+ HFEQNKDVE+AE FVE LKK VDEVG ++FE LIRTY AA +T+PIMRRR+KM+NV+LS + KLLD VC E
Sbjct: 2 AFMQKFLQTKSVTKRGNKYLEEALYKWLFKEGSSEVSVRQQLNQFLKSKKRVYKWEVGHSLKILHHRDRFNPALKLLAWNDDLLAVPSFRKLEMGMNKTVSDHAIHIDLIAKARGIAAAEAYFIDLPETSKNHLTYGALFNCYCKELVTEKAEALLEKMNELKLGLTSMHYNSLMTLYTQTGQPEKIPAIIQEMKAYDIMPDSYTYNVWMRALAAVGDISGVERVIDEMKRDGRVAGDWTTYSNLASIYVDAGFFEKAEKALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKYIHGAEKCFREWESGCSTYDIRVANVLIGAYAKAGLLEKAEELKEQARRRGTKPNAKTWEIFLDYYLKNGEIKSAVDCVDNAISTGRGDGRKWIPAPDIVRHLMQHFEQNKDVEAAEGFVEILKKVVDEVGVEIFEPLIRTYAAASKTSPIMRRRLKMENVELSEDCKKLLDEVCVE 501
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IRC1 ((Uncharacterized protein {ECO:0000313|EMBL:SPD26551.1}))
HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 360/485 (74.23%), Postives = 419/485 (86.39%), Query Frame = 0
Match: A0A2N9IRC1 ((Uncharacterized protein {ECO:0000313|EMBL:SPD26551.1}))
HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 360/485 (74.23%), Postives = 419/485 (86.39%), Query Frame = 0
Query: 7 KFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
+ GR+KSV KRSKK+LEEALY +LFK+G SE++VR QLN F+K++K+VYKWEV DTL+ LR R +YPALKLSE+MA+R + KTVSDQAIHLD+VAK +GISAAE YF+ LPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL LT+MPYNS+MTLYTKTGQPERIPAIIQEMK+ I+ DSYTYN+WMRALAAVNDI+GVERVI++MKRDGRV DWTTYSNLASIYVDA KAE ALKELEKRNACKDL AFQFLITLYGRTGNLLE+YR+WRSLRLAFPKTANISYLNMIQ LV LKDL GAEKCF +W+ CS YDIRIANALIGAY EGLL KA E+K Q++++GAKPNAKTWEIFL+YY+K + K AVDCV AIS GRGDG KW+P + I L+GHFEQ KDVE AE F+E LKK+VD +GA+VFESLIRTY AAGRT+P++RRR+KM+NV+++ +KLL+ +C E
Sbjct: 5 QLGRTKSVAKRSKKYLEEALYTKLFKEGGSEVTVRHQLNQFIKTRKRVYKWEVGDTLRKLRQRKLYYPALKLSETMAKRSMIKTVSDQAIHLDIVAKTRGISAAENYFIELPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLTSMPYNSVMTLYTKTGQPERIPAIIQEMKASHIMLDSYTYNLWMRALAAVNDITGVERVIDEMKRDGRVAGDWTTYSNLASIYVDARSFEKAEKALKELEKRNACKDLSAFQFLITLYGRTGNLLELYRLWRSLRLAFPKTANISYLNMIQALVNLKDLPGAEKCFREWEYGCSIYDIRIANALIGAYAKEGLLEKAEEIKEQARRRGAKPNAKTWEIFLDYYMKNREVKLAVDCVANAISVGRGDGKKWVPSSVIVSNLMGHFEQEKDVEGAEGFLEILKKAVDNLGAEVFESLIRTYAAAGRTSPVIRRRLKMENVEVNEACMKLLETICVE 489
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H851 ((Uncharacterized protein {ECO:0000313|EMBL:CCB48394.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 359/487 (73.72%), Postives = 417/487 (85.63%), Query Frame = 0
Match: F6H851 ((Uncharacterized protein {ECO:0000313|EMBL:CCB48394.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 359/487 (73.72%), Postives = 417/487 (85.63%), Query Frame = 0
Query: 5 MHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
M + R+K++ KRSKK+LEEALY RLFKDGSSE+SVRQQLN FLKS K+V+KWEV DT+K LR R RFYPALKLSE+MA+RG+N T+SDQAI+LDL+ K +G++AAE YF+ LPETSKNHLTYGALLNCYCKE +TEKAEALM++MKEL LGL++MPYNSLMTLYTK GQPE+IP IIQE+KS DI+PDSYTYN+WMRALAAVNDISGVERVI +MKRDGRV +DWTTYSNLASIYVDAG KAE ALKELEKRNAC+DL AFQFLITLYGR GNLLEVYRVWRSLRLAFPKTAN+SYLNMIQVLV LKDL GAEKCF +W+S CS YDIR+ANALIGAY +GLL KA ELK ++++GAKPNAKTWEIFL Y+LK + K AVDCV AISTGRGDG KW+P EI + HFEQ KDV+ AE F+E LK +V+++G +VFESLIR Y AAGRT+P+MRRR+KM+NV++S KLL+ V E
Sbjct: 3 MPQLSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGDTVKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFEQEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCKKLLEEVSVE 489
BLAST of DCAR_007064 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LAW4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p058646:mrna}))
HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 423/491 (86.15%), Query Frame = 0
Match: A0A7N2LAW4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p058646:mrna}))
HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 423/491 (86.15%), Query Frame = 0
Query: 1 MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
MA H GRSKSV KRSKK+LEEALY RLFK+G SE+SVR QLN F+K+ K+VYKWEV DTL+ LR R +YPALKLSE+MA+RG+NKTVSDQAIHLDLVAK +GISAAE YF+ LPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL L++MPYNSLMTLYTKT QPE+IPAIIQEMK+ I+ D+YTYNVWMRALAAVNDI+GVERVI++MKRDGRV DWTTYSNLASIYVDAG KAE ALKELEKRNACKDL A+QFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQ LV +KDL GAEKCF +W+S CS YDIRIANALIGAY EGLL KA E+K +++++GA PNAKTWEIFL+YY+K+ + K AVDCV AIS GRGDG KW+P + + L+GHFEQ KDV+ AE F+E+LK++VD +GA+VFESLIRTY AAGRT+PI+RRR+KM+NV+++ KLLD +C E
Sbjct: 1 MALLQH-LGRSKSVAKRSKKYLEEALYTRLFKEGGSELSVRHQLNQFIKTHKRVYKWEVGDTLRKLRQRKLYYPALKLSETMAKRGMNKTVSDQAIHLDLVAKTRGISAAENYFIDLPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLSSMPYNSLMTLYTKTEQPEKIPAIIQEMKASHIMFDAYTYNVWMRALAAVNDITGVERVIDEMKRDGRVAGDWTTYSNLASIYVDAGLFEKAEKALKELEKRNACKDLSAYQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQALVNVKDLPGAEKCFREWESGCSIYDIRIANALIGAYAKEGLLEKAEEIKERARRRGANPNAKTWEIFLDYYMKKRELKLAVDCVANAISIGRGDGKKWVPSSVVVSSLMGHFEQEKDVDGAEGFLENLKRAVDNLGAEVFESLIRTYAAAGRTSPIIRRRLKMENVEVNEACKKLLDTICVE 490
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AKF0 | E-Value: 0.000e+0, PID: 79.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more] |
| A0A5B7CD39 | E-Value: 0.000e+0, PID: 78.53 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7883... [more] |
| A0A2R6RES2 | E-Value: 0.000e+0, PID: 78.12 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A834G1X9 | E-Value: 0.000e+0, PID: 76.89 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7124... [more] |
| A0A4S4DUW2 | E-Value: 0.000e+0, PID: 77.21 | (Uncharacterized protein {ECO:0000313|EMBL:THG0708... [more] |
| A0A6A1UQC6 | E-Value: 0.000e+0, PID: 74.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAB1202... [more] |
| A0A7J0EY89 | E-Value: 0.000e+0, PID: 74.40 | (Tetratricopeptide repeat (TPR)-like superfamily p... [more] |
| A0A2N9IRC1 | E-Value: 0.000e+0, PID: 74.23 | (Uncharacterized protein {ECO:0000313|EMBL:SPD2655... [more] |
| F6H851 | E-Value: 0.000e+0, PID: 73.72 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4839... [more] |
| A0A7N2LAW4 | E-Value: 0.000e+0, PID: 74.54 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |