DCAR_008546

Resource Type: 
Polypeptide
Name: 
DCAR_008546
Identifier: 
DCAR_008546.mRNA-protein
Sequence: 
MLNDPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYD
STIRKLNKTISPCSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQ
NNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTPKANVVV
AQDGSGNYKTVAAAVAAAKSSSGRFVIYVKAGVYNEKIEIKAKNIMIVGD
GIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQA
VALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAA
VVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPV
LSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGE
YANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPF
TSGL*
Sequence Length: 
455
Sequence Checksum: 
1fd4b54f61994124f48a3b165488be0a
View location in JBrowse: 
DCARv2_Chr2:42947719..42949789-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_008546, derives from mRNA, DCAR_008546.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BE46 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 843.188 bits (2177), Expect = 0.000e+0
Identity = 417/454 (91.85%), Postives = 440/454 (96.92%), Query Frame = 0
 
Query:    1 MLNDPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISPCSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTPKANVVVAQDGSGNYKTVAAAVAAAKSSSGRFVIYVKAGVYNEKIEIKAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            MLN+ DFLKVS+KLALDRAMHAN +TKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISPCSQ+DAQTFLS+ALTNLETCRAGFLELGV+DNLL LMQNNVSKLISNTLA+NKG YKK +YK KFPTWV+PGDRKLLQ+S+PKA+VVVAQDGSGNYKTVAAAVAAAKSSSGR+VIYVKAGVYNEKIEIKAKNIM+VGDGIGKTILTGS+SVGGGSTTF SATLAVVGDGFIG+G TVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPR+PPAGTNTITAQGRTDPNQNTGI+IHNCRVTPADELK VLSSTKNYLGRPWKAYSRTIFMKTFLDGFI+PEGWMEWSG+FALKTLYY EYANTG+G+ TGGRVKWGGYHVLT AA+VS FTVGNFIAG SWLPKTNVPFTSGL
Sbjct:   55 MLNESDFLKVSLKLALDRAMHANRDTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISPCSQDDAQTFLSTALTNLETCRAGFLELGVTDNLLQLMQNNVSKLISNTLAINKGTYKKPNYKDKFPTWVSPGDRKLLQSSSPKADVVVAQDGSGNYKTVAAAVAAAKSSSGRYVIYVKAGVYNEKIEIKAKNIMLVGDGIGKTILTGSRSVGGGSTTFNSATLAVVGDGFIGKGITVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRRPPAGTNTITAQGRTDPNQNTGIVIHNCRVTPADELKSVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIRPEGWMEWSGDFALKTLYYAEYANTGSGSGTGGRVKWGGYHVLTNAATVSKFTVGNFIAGGSWLPKTNVPFTSGL 508
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I390 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 346/458 (75.55%), Postives = 393/458 (85.81%), Query Frame = 0
 
Query:    6 DFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISP---CSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            DFLK+S++LAL+RA+ A  NT SLG+KCRN+LEK AW DCL+LY+ TI +LNKT+ P   CSQ D+QT+LS+ALTNLETCRAGF+ELGVSD LLPLM NNVSKLISNTL++NK  Y + SYK  FPTWV PGDRKLLQ+S+P  +AN+VVA+DGSG+Y T+ AAV+AA  +S +GR+VIYVKAG YNE IEI  K KNIM++GDGIGKTI+TGSKSVGGGSTTF SAT+A VGDGFIGRG T+RNTAG  NHQAVALRSGSDLSVFYQCSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV+QNCNI PR PP  TNTITAQGRTDPNQNTGI IHNC+VT A +LK V SS K YLGRPWK YSRT+FMKT+LD  I P GWMEWSGNFALKTLYYGEY NTG G++T  RV W GYHV+T+++  S FTVGNFIAG+SWLP TNVPFTSGL
Sbjct:   56 DFLKISMQLALERALRAESNTYSLGSKCRNELEKTAWSDCLKLYEYTILRLNKTVDPNTKCSQVDSQTWLSTALTNLETCRAGFVELGVSDYLLPLMSNNVSKLISNTLSLNKVPYTEPSYKEGFPTWVKPGDRKLLQSSSPASQANIVVAKDGSGDYTTITAAVSAASKRSGTGRYVIYVKAGTYNENIEIGAKLKNIMLLGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIGRGLTIRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRNPPNKTNTITAQGRTDPNQNTGISIHNCKVTAASDLKSVQSSVKTYLGRPWKEYSRTVFMKTYLDSLINPAGWMEWSGNFALKTLYYGEYMNTGPGSSTSNRVNWAGYHVITSSSEASKFTVGNFIAGNSWLPATNVPFTSGL 513
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IW82 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 345/458 (75.33%), Postives = 393/458 (85.81%), Query Frame = 0
 
Query:    6 DFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISP---CSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            DFLK+S++LAL+RA+ A  NT SLG+KCRN+LEK AW DCL+LY+ TI +LNKT+ P   CSQ D+QT+LS+ALTNLETC+AGF+ELGVSD LLPLM NNVSKLISNTL++NK  Y + SYK  FPTWV PGDRKLLQ+S+P  +AN+VVA+DGSG+Y T+ AAV+AA  +S +GR+VIYVKAG YNE IEI  K KNIM++GDGIGKTI+TGSKSVGGGSTTF SAT+A VGDGFIGRG T+RNTAG  NHQAVALRSGSDLSVFYQCSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV+QNCNI PR PP  TNTITAQGRTDPNQNTGI IHNC+VT A +LK V SS K YLGRPWK YSRT+FMKT+LD  I P GWMEWSGNFALKTLYYGEY NTG G++T  RV W GYHV+T+++  S FTVGNFIAG+SWLP TNVPFTSGL
Sbjct:   56 DFLKISMQLALERALRAESNTYSLGSKCRNELEKTAWSDCLKLYEYTILRLNKTVDPNTKCSQVDSQTWLSTALTNLETCQAGFVELGVSDYLLPLMSNNVSKLISNTLSLNKVPYTEPSYKEGFPTWVKPGDRKLLQSSSPASQANIVVAKDGSGDYTTIKAAVSAASKRSGTGRYVIYVKAGTYNENIEIGAKLKNIMLLGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIGRGLTIRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRNPPNKTNTITAQGRTDPNQNTGISIHNCKVTAASDLKSVQSSVKTYLGRPWKEYSRTVFMKTYLDSLINPAGWMEWSGNFALKTLYYGEYMNTGPGSSTSNRVNWAGYHVITSSSEASKFTVGNFIAGNSWLPATNVPFTSGL 513
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZTK5 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 343/458 (74.89%), Postives = 388/458 (84.72%), Query Frame = 0
 
Query:    6 DFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISP---CSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            DFLKVS++LAL+R+M+A+ NT +LG+KCRN+ EKAAW DCLELY+ TI +LN+TI P   C+Q DAQT+LS+ALTNLETC+ GF+ELGV+D +LPLM NNVS LISNTLA+NK  Y   SYK  FPTWV+P DRKLLQ+ +P  +AN+VVAQDGSGNYKT+  AV+AA  +S SGR+VIYVKAG Y E ++I  K KNIM+VGDGIGKTI+TGSKSVGGGSTTF SAT+AVVGDGFIGRG T RNTAG  NHQAVALRSGSDLSVFYQCSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV QNCNI  R PP  TNT+TAQGRTDPNQNTGI IHNCRVT A +LKPV SS K YLGRPWK YSRT+F+KT+LD  I P GWM WSGNFAL TLYYGEY NTG G++T  RVKWGGYHV+T+A   S FTVGNFIAG+SWLP TNVPFTSGL
Sbjct:   59 DFLKVSLQLALERSMNAHSNTFTLGSKCRNEREKAAWADCLELYEYTILRLNETIDPSSKCTQVDAQTWLSTALTNLETCQTGFMELGVADYILPLMSNNVSMLISNTLAINKVSYGPPSYKEGFPTWVSPHDRKLLQSPSPASQANIVVAQDGSGNYKTINEAVSAASKRSGSGRYVIYVKAGTYRENVQIGTKLKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAVVGDGFIGRGITFRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKTNTVTAQGRTDPNQNTGISIHNCRVTAASDLKPVQSSVKTYLGRPWKQYSRTVFLKTYLDSLIDPAGWMPWSGNFALSTLYYGEYMNTGPGSSTANRVKWGGYHVITSATEASKFTVGNFIAGNSWLPATNVPFTSGL 516
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YIX0 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 338/458 (73.80%), Postives = 383/458 (83.62%), Query Frame = 0
 
Query:    6 DFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISP---CSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEIK--AKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            DFLKV+++LALDRAMHA  NT +LG+KCRN+ EKAAW DCLELY+ TI KLN T+ P   C+Q DAQT+LS+ALTNLETCR GF+ELGV D +LPLM NNVS LISNTLAMNK  Y + SY+  FPTWV+P DRKLLQ+ +P  +ANVVVAQDGSGNYKT+  A++AA  +S SGR+VIY+KAG Y E ++I    KNIM+VGDGIGKTI+TGSKSVGGG+TTF SAT+AVVGDGFIGRG T  NTAG  NHQAVALRSGSDLSVFYQCSF GYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV QNCNI  R PP  TNT+TAQGRTDPNQNTGI IHNC+VT A +LKPV SS + YLGRPWK YSRT+++KT+LD  I P GWM WSGNFAL TLYYGEY NTGAG++T  RVKWGGYHV+T+A   S FTVGN IAG+SWLP TNVPFTSGL
Sbjct:   66 DFLKVTLQLALDRAMHAEANTYTLGSKCRNEHEKAAWADCLELYEYTILKLNTTVDPSTRCTQVDAQTWLSTALTNLETCRTGFIELGVPDYILPLMSNNVSMLISNTLAMNKVSYGEPSYRDGFPTWVSPHDRKLLQSPSPASQANVVVAQDGSGNYKTINEAISAASKRSGSGRYVIYIKAGTYKESVQIGNGLKNIMLVGDGIGKTIITGSKSVGGGTTTFNSATVAVVGDGFIGRGITFENTAGPANHQAVALRSGSDLSVFYQCSFLGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARSPPNKTNTVTAQGRTDPNQNTGISIHNCKVTAASDLKPVQSSVRTYLGRPWKQYSRTVYLKTYLDSLIDPAGWMPWSGNFALSTLYYGEYMNTGAGSSTASRVKWGGYHVITSATEASKFTVGNLIAGNSWLPATNVPFTSGL 523
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VTC4 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 340/458 (74.24%), Postives = 382/458 (83.41%), Query Frame = 0
 
Query:    4 DPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTI-SPCSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            + DFLK+S++LALDRA+HA  NT  LGTKCRN+ EKAAW DCLELY+  I  LN+T  S CS+ DAQT+LS+ALTNLETCR GF+ELGV D +LPLMQNNVSKLISN+LA+NK  Y + SY+G FPTWV PGDRKLLQ+S+P  +AN+VVAQDGSGNYKT+A AVAAA  +S +GR++IYVKAG Y E IEI  K KNIM VGDGIGKTI+TGS+SVGGGSTTF SAT A VGDGFI R  T RNTAG +NHQAVA+RSGSDLSVFY+CSFEGYQDTLYVHS RQFYRECDIYGTVDFIFGNAAVV+QNCNI  R PP  TNT+TAQGRTDPNQNTGI IHN RVT A +LKPV SS + YLGRPWK YSRT+FMKTFLD  I P GWMEWSGNFAL TLYYGEY NTG G++T  RV W GYHV+T+A+  S FTV NFI+G SWLP TNVPFTSGL
Sbjct:   57 ESDFLKISMQLALDRALHAEANTYKLGTKCRNEHEKAAWTDCLELYEYVIDWLNQTTTSTCSKFDAQTWLSTALTNLETCRTGFIELGVPDYVLPLMQNNVSKLISNSLAINKVPYTEPSYQGGFPTWVKPGDRKLLQSSSPASQANIVVAQDGSGNYKTIAEAVAAASKRSGTGRYIIYVKAGTYKENIEIGKKLKNIMFVGDGIGKTIVTGSRSVGGGSTTFKSATFAAVGDGFIARDMTFRNTAGPQNHQAVAVRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARNPPNKTNTLTAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVRTYLGRPWKQYSRTVFMKTFLDSLINPAGWMEWSGNFALSTLYYGEYMNTGPGSSTANRVNWKGYHVITSASEASKFTVQNFISGGSWLPGTNVPFTSGL 514
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZYE7 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 336/461 (72.89%), Postives = 386/461 (83.73%), Query Frame = 0
 
Query:    3 NDPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTI---SPCSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            ++PDFLK+S++LAL RA  A  NT  LG KCRNK EKAAW DCL+LY+ TI +LNKT+   +  +++DAQT+LS+ALTNLETCR GF+ELGV D LLP+M NNVSKLISNTLA+NK  YK+ SYK  FPTWV PGDRKLLQ+S+P  +AN+VVAQDGSGNYKT+  A++AA  +S SGR+VIYVKAG Y E ++I  K KNIM+VGDGIGKTI+TGSKSVGGGSTTF SAT+A VGDGFI R  T+RNTAG +NHQAVALRSG+DLSVFY+CSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV+QNCNI  R+PP  TNT+TAQGRTDPNQNTGIIIHN RVT A +LKPV SS K YLGRPWK YSRT+FMKTFLD  I P GWMEW GNFAL TLYY EY +TG G++T  RVKW GYHVLT+A+  S FTV NF+AG+SWLP T VPFTSGL
Sbjct:   57 DEPDFLKISMQLALQRATRAQSNTYLLGPKCRNKREKAAWADCLDLYELTILRLNKTVDSSTKLNKDDAQTWLSTALTNLETCRTGFIELGVPDYLLPMMSNNVSKLISNTLALNKAPYKEPSYKDGFPTWVKPGDRKLLQSSSPASRANIVVAQDGSGNYKTITDALSAASKRSGSGRYVIYVKAGTYKENVQIGSKLKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIARDITIRNTAGPQNHQAVALRSGADLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARRPPNKTNTVTAQGRTDPNQNTGIIIHNSRVTAASDLKPVQSSVKTYLGRPWKQYSRTVFMKTFLDSLINPAGWMEWDGNFALNTLYYAEYMDTGPGSSTSNRVKWRGYHVLTSASEASKFTVSNFLAGNSWLPATGVPFTSGL 517
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CFK4 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 340/461 (73.75%), Postives = 385/461 (83.51%), Query Frame = 0
 
Query:    4 DPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISP---CSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNK-GVYKKASYKGKFPTWVTPGDRKLLQTSTP--KANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            + DF K+S++LALDRAM A  NT SLGTKCRN+ EKAAW+DCLELY  TI K+N+T+ P   C++ DAQT+LS+ALT+L+TCR+GF+E GVSD +LPLM NNV+KLISNTLA+N      + SYKG +PTWV PGDRKLLQ S+P  +ANVVVAQDGSGNYKT+  AVAAA  +S SGR+VIYVK G Y E +EI  K KNIM+VGDGIGKTI+TGSKSVGGG+TTF SAT+A VGDGFI R  TVRNTAG +NHQAVALRSGSDLSVFY+CSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV+QNCNI  R PP  TNT+TAQGRTDPNQNTGI IHNCRVT A +LKPV SS K YLGRPW+ YSRT+FMKTFLDG I P GWM WSGNFAL TLYYGEY NTGAG++T  RV W GY V+T+A   S FTVGNFIAG+SWLP TNVPFTSGL
Sbjct:   59 ESDFFKLSMQLALDRAMQAQTNTYSLGTKCRNEREKAAWNDCLELYQHTILKINETMDPNTKCTKIDAQTWLSTALTDLDTCRSGFVEFGVSDYVLPLMSNNVTKLISNTLAINNVSQGYEPSYKGGYPTWVNPGDRKLLQASSPASQANVVVAQDGSGNYKTITEAVAAASKRSGSGRYVIYVKQGTYKENVEIGSKLKNIMLVGDGIGKTIITGSKSVGGGTTTFKSATVAAVGDGFIARDITVRNTAGAQNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQNCNIYCRNPPNKTNTVTAQGRTDPNQNTGISIHNCRVTAASDLKPVQSSVKTYLGRPWQEYSRTVFMKTFLDGLINPAGWMPWSGNFALDTLYYGEYMNTGAGSSTANRVNWKGYRVITSATEASKFTVGNFIAGNSWLPATNVPFTSGL 519
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5ZWC1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 338/461 (73.32%), Postives = 383/461 (83.08%), Query Frame = 0
 
Query:    3 NDPDFLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTISPCS---QEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQ--TSTPKANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            ++PDFLK+S++LAL+RA HA  NT SLG KCRN+ EKAAW DCL+LY+ TI +LNKT+   +   ++DAQT+LS+ALTNLETCR GF+ELGV D LLP+M NNVSKLISNTLA+NK  YK+ SYK  FPTWV PGDRKLLQ  TS   AN+VVAQDGSG+YKT+  A++AA  +S SGR+VIYVKAG Y E +EI  K KNIM+VGDG GKTI+TGSKSVGGGSTTF SAT+A VGDGFI R  T RNTAG KNHQAVALRSGSDLSVFY+CSFEGYQDTLYVHS+RQFYRECDIYGTVDFIFGNAAVV QNCNI  R PP  T+T+TAQGRTDPNQNTGIIIHN RVT A +L+PV SS K YLGRPWK YSRT+FMKTFLD  I P GWMEW GNFAL TLYY EY NTG G++T  RVKW GYHVLT+A+  S+FTVGNF+AG+SWLP T VPFTSGL
Sbjct:   57 DEPDFLKISMQLALERAKHAESNTYSLGPKCRNEREKAAWSDCLKLYELTILRLNKTVDSSTNLNKDDAQTWLSTALTNLETCRTGFIELGVPDYLLPMMSNNVSKLISNTLALNKAPYKEPSYKDGFPTWVKPGDRKLLQSPTSASSANIVVAQDGSGDYKTIKDAISAASKRSGSGRYVIYVKAGTYRENVEIGSKLKNIMLVGDGKGKTIITGSKSVGGGSTTFNSATVAAVGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKTSTVTAQGRTDPNQNTGIIIHNSRVTAASDLRPVQSSVKTYLGRPWKQYSRTVFMKTFLDSLINPAGWMEWDGNFALNTLYYAEYMNTGPGSSTSNRVKWRGYHVLTSASEASEFTVGNFLAGNSWLPATGVPFTSGL 517
[Close]
BLAST of DCAR_008546 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2X486 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 692.96 bits (1787), Expect = 0.000e+0
Identity = 336/457 (73.52%), Postives = 381/457 (83.37%), Query Frame = 0
 
Query:    7 FLKVSIKLALDRAMHANLNTKSLGTKCRNKLEKAAWDDCLELYDSTIRKLNKTI---SPCSQEDAQTFLSSALTNLETCRAGFLELGVSDNLLPLMQNNVSKLISNTLAMNKGVYKKASYKGKFPTWVTPGDRKLLQTSTPK--ANVVVAQDGSGNYKTVAAAVAAA--KSSSGRFVIYVKAGVYNEKIEI--KAKNIMIVGDGIGKTILTGSKSVGGGSTTFASATLAVVGDGFIGRGFTVRNTAGGKNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSDRQFYRECDIYGTVDFIFGNAAVVIQNCNIRPRKPPAGTNTITAQGRTDPNQNTGIIIHNCRVTPADELKPVLSSTKNYLGRPWKAYSRTIFMKTFLDGFIKPEGWMEWSGNFALKTLYYGEYANTGAGAATGGRVKWGGYHVLTTAASVSDFTVGNFIAGSSWLPKTNVPFTSGL 454
            F K+S  LAL+RA  A  NT SLGTKCRN+ EKAAW DC+ LY+ TI +LNKT+   +  +++DAQT+LS+ALTNLETCR GF+ELGV D LLP+M NNVS+LISNTLA+NK  YK+ +YK  FPTWV PGDRKLLQ+S+P   AN+VVAQDGSGNYKT+  A++AA  +S SGR+VIYVKAG Y E +EI  K KNIM+VGDGIGKTI+TGSKSVGGGSTTF SAT+AVVGDGFI RG T RNTAG  NHQAVALRSGSDLSVFY+CSFEGYQDTLYVHS+RQFYRECDIYGTVD+IFGNAAVV QNCNI  R PP  TNT+TAQGRTDPNQNTGIIIHN RVT A +LKPV SS K YLGRPWK YSRT+FMKT+LD  I P GWMEW G+FALKTLYY EY NTG G++T  RVKWGGYHVL +A+ VS FTVGNF+AG+SWLP T VPFTSGL
Sbjct:   63 FFKISTHLALERAARAESNTHSLGTKCRNEREKAAWSDCVNLYELTILRLNKTVDSGTNLNKDDAQTWLSTALTNLETCRTGFMELGVPDYLLPMMSNNVSQLISNTLALNKAPYKEPTYKDGFPTWVKPGDRKLLQSSSPASTANIVVAQDGSGNYKTIKDAISAASKRSGSGRYVIYVKAGTYKENVEIGSKLKNIMMVGDGIGKTIITGSKSVGGGSTTFNSATVAVVGDGFIARGITFRNTAGPTNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDWIFGNAAVVFQNCNIYARNPPNKTNTVTAQGRTDPNQNTGIIIHNSRVTAASDLKPVQSSVKTYLGRPWKQYSRTVFMKTYLDSLINPAGWMEWDGDFALKTLYYAEYMNTGPGSSTSNRVKWGGYHVLKSASEVSKFTVGNFLAGNSWLPSTGVPFTSGL 519
Match NameStatsDescription
A0A6L5BE46E-Value: 0.000e+0, PID: 91.85Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
F6I390E-Value: 0.000e+0, PID: 75.55Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A438IW82E-Value: 0.000e+0, PID: 75.33Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5J4ZTK5E-Value: 0.000e+0, PID: 74.89Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5B6YIX0E-Value: 0.000e+0, PID: 73.80Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A2C9VTC4E-Value: 0.000e+0, PID: 74.24Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A6J0ZYE7E-Value: 0.000e+0, PID: 72.89Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A7J7CFK4E-Value: 0.000e+0, PID: 73.75Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A6P5ZWC1E-Value: 0.000e+0, PID: 73.32Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5D2X486E-Value: 0.000e+0, PID: 73.52Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.