DCAR_008625

Resource Type: 
Polypeptide
Name: 
DCAR_008625
Identifier: 
DCAR_008625.mRNA-protein
Sequence: 
MFELGRYRSRILRDALWKCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTI
TNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHS
IPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAK
AGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAE
HADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYI
EKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWI
DFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGF
TNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQ
TTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLG
KQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRN
VAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQG
CGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKLNGVVRMAALRLAKSRS
LGSSCFSFGRDLSRIETRVLFSLMNTSSFCTNSSGFVLDNIGGKFDCKGG
KDLGSDRAKWCGTFSAMPVRLGSNVLGFGGSFGMVSQRLYSSNAVGGNVD
KSGGSEVGVSSGGVDVSDGGFGGGDWVEKVKGAWKSVIDAGNYTGEKVKE
VSDELMPYGQQLLDTHPYLKDVIVPVGCTLTGTILAWFVMPKVLRRFHKF
SMQGPAQLLSGSSLWGPVPYERSFWGALEDPLRYVVTFMAFSQIANMVAP
TTIASQYILQTWRGAVILSVVWFLHRWKTNVISRALASKSSQGLVDRDKL
LAIDKISSVALFSLGLMALAEAFGVAVQSILTVGGIGGNGLSVQMSRPFS
VGDTIRAGSVEGQVVEMGLTTTRLLSAEKFPVIVPNSLFSSQVIVNKSRA
EWRAMLTKIPLHISEFDKIPQISDDITNMIKSNSNVFLEREVPYCFLSRV
ERSYAELTLGYNLKHMRKDLLCAAEQDILLKSVQIIQQHGATLGSTFEDS
IGQ*
Sequence Length: 
1104
Sequence Checksum: 
1b4405de084936082369d15f0cc840b8
View location in JBrowse: 
DCARv2_Chr2:43581398..43589976+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_008625, derives from mRNA, DCAR_008625.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4B1A6 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 388/567 (68.43%), Postives = 469/567 (82.72%), Query Frame = 0
 
Query:   19 CLLLLMCV-LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            C+  LM + LV+SSPPE+PI+CT+ N++  CTITNSYGAFPDRS CRA  AV+PTTEEEL++VVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY++QLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS+VTLK+EP+FKRS+T  E++DS+L ++ + FG++HEFAD  WYPSQRK +YR+DDRVP NT GN   DF GF+ST S+ LAILR +EE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QASG CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDA+DFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK+ YD  GLFSSEWTDQVLGLKDGL IVK+GC LEGLCICSED HCAP KGY C+ GK+Y DA++
Sbjct:    8 CIYFLMILNLVKSSPPEDPIKCTS-NNNFNCTITNSYGAFPDRSICRAGQAVFPTTEEELIAVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILSVDKENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYILQLRIVTPAEAAQNYAQIRTLENGNP-ELDAARVSLGVLGVISQVTLKVEPVFKRSITLSERNDSELGDETVVFGRKHEFADFTWYPSQRKVVYRIDDRVPANTPGNGLNDFLGFRSTASLVLAILRSSEENQESRNDSGGKCTSAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQASGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVALEPKALCVLDLYNGILMRYLTTSNAYLGEQEDALDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNADKFLKVKQRYDKLGLFSSEWTDQVLGLKDGLTIVKEGCALEGLCICSEDIHCAPQKGYFCRPGKIYKDARV 572
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6J1X9 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}) (Fragment))

HSP 1 Score: 831.632 bits (2147), Expect = 0.000e+0
Identity = 389/567 (68.61%), Postives = 465/567 (82.01%), Query Frame = 0
 
Query:   19 CLLLLMCV-LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            C+  LM + +V+SSPPE+PI+CT+ N+   CTITNSYGAFPDRS CRA  AV+PTTEEEL+SVVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY+VQLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS++TLKLEP+FKR++T  E++DSDL ++   FG++HEFAD  WYPSQR  +YR+DDRVP NT GN   DF GF+ST S+ LAILR TEE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QA+G CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDAVDFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK  YD  GLFSSEWTDQVLGLKDGL IVK+GC LEGLCICSED HCAP KGY C+ GK+Y DA++
Sbjct:    7 CIYFLMILNVVKSSPPEDPIKCTSKNN-FNCTITNSYGAFPDRSICRAGQAVFPTTEEELISVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILRVDQENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYIVQLRIVTPAEAAQNYAQIRILENGNP-ELDAARVSLGVLGVISQITLKLEPVFKRAITLSERNDSDLGDEAAVFGRKHEFADFTWYPSQRMVVYRIDDRVPANTPGNGLNDFLGFRSTASLVLAILRSTEENQESRNDSGGKCASAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQATGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVTLEPKALCVLDLYNGILMRYLTASNAYLGEQEDAVDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNADKFLKVKEKYDKLGLFSSEWTDQVLGLKDGLTIVKEGCALEGLCICSEDIHCAPKKGYFCRPGKIYKDARV 571
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YAP2 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 384/558 (68.82%), Postives = 461/558 (82.62%), Query Frame = 0
 
Query:   27 LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            LV+SSPPE+PI+CT + ++  CTITNSYGAFPDRS C+A  AV+PTTEEEL+SVVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY+VQLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS++TLKLEP+FKR++T  E++DSDL ++   FG++HEF D  WYPSQRK +YR+DDRVP NT GN   DFPGF+ST S+ LAILR +EE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QASG CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDA+DFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK  YD  GLFSSEWTDQVLGLKDGL+IVK+GC LEGLCICSED HCAP  GY C+ GK+Y DA++
Sbjct:    5 LVKSSPPEDPIKCT-YKNNFNCTITNSYGAFPDRSICKAGQAVFPTTEEELISVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILRVDQENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYIVQLRIVTPAEAAQNYAQIRTLENGNP-ELDAARVSLGVLGVISQITLKLEPVFKRAITLSERNDSDLGDEAAVFGRKHEFGDFTWYPSQRKVVYRIDDRVPANTPGNGLNDFPGFRSTASLVLAILRSSEENQESRNDSGGKCASAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQASGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVDLEPKALCVLDLYNGILMRYLTASNAYLGEQEDALDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNAGKFLKVKERYDKLGLFSSEWTDQVLGLKDGLIIVKEGCALEGLCICSEDIHCAPKMGYFCRPGKIYKDARV 560
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1A099 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 828.55 bits (2139), Expect = 0.000e+0
Identity = 380/567 (67.02%), Postives = 465/567 (82.01%), Query Frame = 0
 
Query:   18 KCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            KCL L + ++V  +PPE P++C++ +S+  CTI+NSYG+FPDR  CRA +  YPTTE ELVS+V+ A +  RKMKV TRF HSIPKLVC DG+ GLLIST+YLN TL I+ ++  M VE+GVTL+QLI DAAKAGLALPYAPYWWGLT+GGL+GTGAHGSSLWGKGSSVHDYVV++RIV+PA   +GYA+VR L + ++ +  AAKVSLGVLGVIS+VT KL+PLFKRS++Y+ + D+DL ++ I FGKQHEFAD+IWYPSQRKA+YR+DDRV  N SGN   DF  F+ST S+ALA +R TEE +ES  DAD KC  AKL+ S L+ + YG TNNGIIFTGYPVIG+HNRLQ+SG CL  PE++LITACPWD RIK  F+HQT FS+GLS V  FI+DVQKLV L PK+LCG++LY GILMRYV  S+A+LGKQEDA+DFDITYYRSKDP+ PRL+QDI+EEIEQ+ +FKYGALPHWGKNRN+AF   I +YK A +F+KVK MYDP GLFSSEWTDQ+LGL++G+  +K+GC LEG CICS D HCAP KGYLC+ GK + +AK+
Sbjct:   17 KCLFLFV-IMVSCTPPEEPVKCSSKDSN--CTISNSYGSFPDRKICRAGNVAYPTTENELVSIVSAAAEAKRKMKVVTRFSHSIPKLVCPDGEDGLLISTKYLNHTLKIDAAAMTMTVESGVTLRQLINDAAKAGLALPYAPYWWGLTIGGLLGTGAHGSSLWGKGSSVHDYVVEMRIVSPAGAKEGYAKVRVLHERDK-DLEAAKVSLGVLGVISQVTFKLQPLFKRSISYVTQDDADLGDEAITFGKQHEFADIIWYPSQRKAVYRIDDRVSSNASGNGLYDFTPFRSTLSLALAFIRTTEETQESLRDADGKCLGAKLVVSTLQTAAYGLTNNGIIFTGYPVIGFHNRLQSSGTCLDSPEDSLITACPWDPRIKGEFFHQTAFSVGLSVVKSFIQDVQKLVALEPKALCGLELYSGILMRYVKASSAYLGKQEDAIDFDITYYRSKDPMAPRLYQDIIEEIEQIALFKYGALPHWGKNRNLAFDGVIERYKNAGKFLKVKNMYDPSGLFSSEWTDQILGLRNGVTTLKEGCALEGSCICSHDIHCAPSKGYLCRPGKTFQNAKV 579
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1W3C4 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 828.165 bits (2138), Expect = 0.000e+0
Identity = 388/566 (68.55%), Postives = 457/566 (80.74%), Query Frame = 0
 
Query:   19 CLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            CL LL+ + V  SPPE+PI+C++ N  T CTITNSYG FPDRS CRA +  YP+TEEEL+SVVA  T++ RKMKVATRF HSIPKLVC DG  GLLIST+YLNRTL I+  S  M VETGVTL+QLI DA+ AGLALPYAPYWWGLT+GGL+ TGAHGS+LWGKGSSVHDYVV+LR+V+P     GYA+VR L+D ++ + NAAKVSLGVLGVIS+VTLKL+PLFKRS++Y+ K DSDL +QV  FG +HEFAD+ WYPSQ KA+YR+D RVP NTSG+   DF  F+STP++ LAI+R +EE +ES  DA+ KC  AK I S L    YG +NNGI FT YPVIGYHNRLQASG+CL   E+A ITAC WDHR+K  F+HQTTFSIGLS    FI DVQKL+ L PK++CGVDLY+GILMRYV  S+A+LGKQEDAVDFDITYYRSKDP+ PRL++D+LEEIEQL +F+Y ALPHWGKNRN+AF  AI KYK A EF+KVK  YDP GLFSSEWTDQ+LGLKDG  + K GC LEGLCICS+DSHCAP  GY C+ GKVY DA++
Sbjct:   18 CLFLLI-IFVSCSPPEDPIKCSSKN--TNCTITNSYGTFPDRSVCRAVEVAYPSTEEELISVVATTTRSKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNRTLRIDVKSMTMTVETGVTLRQLINDASHAGLALPYAPYWWGLTIGGLLSTGAHGSTLWGKGSSVHDYVVELRVVSPGGPEGGYAKVRTLNDGDK-DMNAAKVSLGVLGVISQVTLKLQPLFKRSISYMTKDDSDLGDQVASFGSEHEFADITWYPSQHKAVYRIDYRVPTNTSGDGRNDFTPFRSTPTLELAIIRTSEEVQESNMDANGKCINAKTIISLLLSGAYGLSNNGIAFTSYPVIGYHNRLQASGSCLDSLEDARITACAWDHRVKGEFFHQTTFSIGLSMAKSFIEDVQKLIELEPKAMCGVDLYNGILMRYVKASSAYLGKQEDAVDFDITYYRSKDPMIPRLYEDVLEEIEQLALFRYQALPHWGKNRNLAFDGAIKKYKNAGEFLKVKEGYDPSGLFSSEWTDQILGLKDGATVAKYGCALEGLCICSQDSHCAPSLGYYCRPGKVYKDARV 579
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DT84 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 379/567 (66.84%), Postives = 467/567 (82.36%), Query Frame = 0
 
Query:   18 KCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            KCL L + ++V  +PPE P++C++ +S+  CTI+NSYG+FPDR+ CRA +  YPTTE+ELVS+V+ A +  RKMKV TRF HSIPKLVC DG+ GLLIST+YLN TL I+ ++  M VE+GVTL+QLI DAAKAGLALP+APYWWGLT+GGL+GTGAHGSSLWGKGSSVHDYVV++R+V+PA   +GYA+VR L++ ++ + +AAKVSLGVLGVIS+VT KL+PLFKRS++Y+ K D+DL ++ I FGKQHEFAD+ WYPSQRKA+YR+DDRV  N SG    DF  F+STPS+ALA +R TEE +ES  DAD KC   KLI S L+ + YG TNNGIIFTGYPVIG+HNRLQ+SG CL  PE++LITACPWD RIK  F+ Q+TFS+GLS V  FI+DVQKLV L PK+LCG++LY GILMRYV  S+A+LGKQEDA+DFDITYYRSKDP+ PRL+QDILEEIEQ+ +FKYGALPHWGKNRN+AF   I +YK A EF+KVK MYDP  LFSSEWTDQ+LGL++G+  +K+GC LEGLCICS D HCAP KGYLC+ GK + +AK+
Sbjct:   17 KCLFLFV-IMVSCTPPEEPVKCSSKDSN--CTISNSYGSFPDRTICRAGNVAYPTTEKELVSIVSAAAEAKRKMKVITRFSHSIPKLVCPDGEDGLLISTKYLNHTLKIDAAAMTMTVESGVTLRQLINDAAKAGLALPHAPYWWGLTIGGLLGTGAHGSSLWGKGSSVHDYVVEMRMVSPAGAKEGYAKVRVLNESDK-DLDAAKVSLGVLGVISQVTFKLQPLFKRSISYVTKDDADLGDEAITFGKQHEFADVSWYPSQRKAVYRIDDRVSSNASGCGLYDFIPFRSTPSLALAFIRTTEETQESLRDADGKCLSGKLIVSTLQTAAYGLTNNGIIFTGYPVIGFHNRLQSSGTCLDSPEDSLITACPWDPRIKGEFFQQSTFSVGLSVVKSFIQDVQKLVALEPKALCGLELYSGILMRYVKASSAYLGKQEDAIDFDITYYRSKDPMAPRLYQDILEEIEQIALFKYGALPHWGKNRNLAFDGVIKRYKNAGEFLKVKNMYDPSRLFSSEWTDQILGLRNGVTTLKEGCALEGLCICSHDIHCAPSKGYLCRPGKTFQNAKV 579
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U0I5 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 823.157 bits (2125), Expect = 0.000e+0
Identity = 378/568 (66.55%), Postives = 467/568 (82.22%), Query Frame = 0
 
Query:   26 VLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQL--EFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKLNGVVRMA 591
             L   +PPE P++C+  N+ T CTITNSYG FPDRSTC AA+A YP++E+++VS+VA AT+  RKM+VATR+ HSIPKLVC DG+ GL+ISTE LNR + I++   ++ +E+GVTL+QLI++AAK+GLA PY PYWWGLT+GGL+GTGAHGS+LWG GSS+HDYVVQ+RIVT     +GYA+VR L++  +   E  AAKVSLGVLGVIS+VTLKL+PLFKRSVT++ K+D+DL++Q I FG+QHEFAD+ WYPSQ++ +YR+DDRV  N SGN   D PGF+STPS+AL ILR TEE +E+K DA  KCR  KL T+ L  S +G TN+GIIF GYPVIGY NRLQASG CL G ++A ITACPWD R+K LF+HQTTFSI LSK  DFI+DVQKLV +AP+SLCG+DLY+GILMRYVT SNA++GKQED++DFDITYYRSKDP  PRL++D+LEEIEQ+ +FKY  LPHWGKNRNVAF  AI KYKK+ EF+KVK  YDP GLFSSEWTDQVLGLK GL IVK+GC LEGLC+CSED HCAP KGYLC+ GKV+ DA++  +V+++
Sbjct:   18 TLANGNPPEEPVKCS--NNFTNCTITNSYGVFPDRSTCHAAEAAYPSSEQDIVSIVANATRAKRKMRVATRYSHSIPKLVCPDGENGLIISTENLNRVIKIDKEKMLVTLESGVTLRQLIDEAAKSGLAFPYTPYWWGLTIGGLLGTGAHGSTLWGDGSSIHDYVVQMRIVTAGSEENGYAKVRTLEENGEFDGEMKAAKVSLGVLGVISQVTLKLQPLFKRSVTFLPKNDTDLSDQAIAFGRQHEFADITWYPSQKRVVYRIDDRVSSNVSGNGLWDHPGFRSTPSLALLILRSTEEDQEAKGDAAGKCRNGKLTTNTLIRSAFGLTNDGIIFKGYPVIGYQNRLQASGGCLKGLKDAEITACPWDPRVKGLFFHQTTFSIVLSKAKDFIQDVQKLVSIAPQSLCGIDLYNGILMRYVTGSNAYIGKQEDSLDFDITYYRSKDPKTPRLYEDVLEEIEQMAVFKYDGLPHWGKNRNVAFEGAIKKYKKSREFLKVKGKYDPLGLFSSEWTDQVLGLKGGLTIVKEGCALEGLCVCSEDIHCAPQKGYLCRPGKVFQDARVCTLVQVS 583
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IFB9 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 382/559 (68.34%), Postives = 457/559 (81.75%), Query Frame = 0
 
Query:   31 SPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKLNGVVR 589
            SPPE+PI+C + N  T CTITNSYGAFPDRS CRA+   YPTTEEEL+SVVA A  +  KMK  TRF HSIPKLVC DG+ GLLIST+YLNRTL+I+ S+  + +E+G TL+Q+I++AAKAGLALPYAPYWWGLT+GGL+ +GAHGSSLW KGSSVH+YV QLRI+TPA   +GY +VR LD  ++ + NAAKVS+GVLGVIS+ TL+L+PLFKRS+ Y  K+DSDLA+Q   FG +HEFAD+ WYPSQ KA+YR+DDRVP NTSGN   DF GF+ST S+ALA+LR TEE +E K +AD KC  AKL T AL  + YG TNNGIIFTGYPVIGYHNRLQASG CL   E+A ITACPWD R+K  F+HQTTFSI LS+V  FIRDVQKL+ + PK++CG++LY+GILMRYV  S A+LGKQEDA+DFDIT+YRSKDP+ PRL++DILEE+EQ+G+FKYG LPHW KNRN+AF  AI KYK A +F+KVK  YDP GLFSSEWTDQVLGLK G+ I K+GC LEGLCICSEDSHCAP+KGY C+ GKVY DA++  + R
Sbjct:   23 SPPEDPIKCASKN--TNCTITNSYGAFPDRSRCRASAVAYPTTEEELISVVAKAAMDRTKMKAVTRFSHSIPKLVCTDGEDGLLISTKYLNRTLNIDPSAMTISIESGATLRQVIDEAAKAGLALPYAPYWWGLTIGGLLSSGAHGSSLWSKGSSVHEYVEQLRIITPAGRENGYVQVRTLDTSHE-DLNAAKVSIGVLGVISQATLRLQPLFKRSIDYTTKNDSDLADQAATFGSRHEFADITWYPSQGKAVYRIDDRVPSNTSGNGLNDFTGFRSTSSLALALLRTTEENQELKGNADGKCTAAKLTTLALSRAAYGLTNNGIIFTGYPVIGYHNRLQASGTCLDSIEDARITACPWDPRVKGQFFHQTTFSIALSRVRSFIRDVQKLLEIEPKAMCGLELYNGILMRYVKASTAYLGKQEDALDFDITHYRSKDPMTPRLYEDILEEVEQMGLFKYGGLPHWAKNRNLAFDGAIKKYKNAWKFLKVKERYDPLGLFSSEWTDQVLGLKKGVTIFKKGCALEGLCICSEDSHCAPEKGYFCRPGKVYKDARVCTLSR 578
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5F4J1 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 377/566 (66.61%), Postives = 463/566 (81.80%), Query Frame = 0
 
Query:   19 CLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            CL +L   +  S+PPE  I+C++ +++T CTITNSYG FPDRS CRA    YP+ EEEL+SVVA A K   KMKVATR+ HSIPKLVC  G+ GL+IST+YLNR + I+  +  M +E+GVTL+QLI +AAKAGLALPY PYWWGLTVGGL+GTGAHGS+LWGKGSS+HDYVV L IV+P    DGY +VR L+D ++ + NAAKVSLGVLGVIS+VTL L+P+FKR++TY+ KSDSDL +QV+ FGK+HEFAD+IWYPSQ KA+YRMDDRV  NTSGN   DF  F++TPS+ALA++R TEE +ES++DAD KC  AKL+TS L  + YG TNNG+ FTGYPVIGY +RLQ+SG CL   E++ ITACPWD +IK  F+HQTTFSI LS   +FI+DVQKLV + PK+LCGV++Y+GILMRYVT S+A+LGKQEDAVDFDITYYRSKDP+ PRL++ ILEEIEQL + KY ALPHWGKNRN+AF   +NKYK + EF++VK +YDP GLFSSEWTDQVLGLKDG+ IVK+GC LEGLCICSED+HCAP KGY C+ GK++ DA++
Sbjct:   19 CLFILSFSVCISTPPEAHIKCSS-STNTNCTITNSYGIFPDRSVCRAGSVAYPSDEEELISVVANAAKKKTKMKVATRYSHSIPKLVCPSGEDGLIISTKYLNRVVEIDAEAKTMTLESGVTLRQLISEAAKAGLALPYTPYWWGLTVGGLLGTGAHGSTLWGKGSSIHDYVVGLTIVSPGGPKDGYVKVRRLNDGDK-DLNAAKVSLGVLGVISQVTLNLQPMFKRAITYLSKSDSDLGDQVVRFGKEHEFADIIWYPSQHKAVYRMDDRVSTNTSGNGLYDFIPFRATPSLALAVIRATEENQESQSDADGKCTSAKLVTSTLITNAYGLTNNGLFFTGYPVIGYQHRLQSSGTCLHSLEDSRITACPWDPKIKGEFFHQTTFSINLSLAKNFIQDVQKLVEIEPKALCGVEIYNGILMRYVTTSSAYLGKQEDAVDFDITYYRSKDPMTPRLYEGILEEIEQLALVKYKALPHWGKNRNIAFDGVMNKYKGSEEFLRVKDVYDPMGLFSSEWTDQVLGLKDGVTIVKEGCALEGLCICSEDNHCAPSKGYFCRPGKIFNDARI 582
[Close]
BLAST of DCAR_008625 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5F9U7 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 380/566 (67.14%), Postives = 460/566 (81.27%), Query Frame = 0
 
Query:   19 CLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKL 584
            CL +L   +  S+PPE  I+C++ +++T CTITNSYG FPDRS CRA    YP+ EEEL+SVVA A K   KMKVATR+ HSIPKLVC  G+ GL+IST+YLNR + I+  +  M +E+GVTL+QLI +AAKAGLALPY PYWWGLTVGGL+GTGAHGS+LWGKGSS+HDYVV L IV+P   ADGY +VR L+D ++ + NAAKVSLGVLGVIS+VTL L+P+FKRS+TY+ K DSDL +QV+ FGK+HEFAD++WYPSQ KA+YRMDDRV  NTSGN   DF  F+ TPS+ALA++R TEE +ESK+DAD KC  AKL+TS L  S YG TNNG+IFTGYPVIGY +RLQ+SG CL   EN+ ITAC WD +IK  F+HQTTFSI LS   +FI+DVQKLV + PK+LCGV++Y+GILMRYVT S+A+LGKQ+DA+DFDITYYRSKDP+ PRL + ILEEIEQL + KYGALPHWGKNRN+AF   +NKYK A EF+KVK +YDP GLFSSEWTDQVLGLKD + IVK+GC LEGLCICSED HCAP KGY C+ GK++ DA++
Sbjct:   19 CLFILSFSVCISTPPEAHIKCSS-STNTNCTITNSYGIFPDRSVCRAGSVAYPSDEEELISVVANAAKKKTKMKVATRYSHSIPKLVCPSGEDGLIISTKYLNRVVEIDAEAKTMTLESGVTLRQLISEAAKAGLALPYTPYWWGLTVGGLLGTGAHGSTLWGKGSSIHDYVVGLTIVSPGGPADGYVKVRRLNDGDK-DLNAAKVSLGVLGVISQVTLNLQPMFKRSITYLSKDDSDLGDQVVRFGKEHEFADILWYPSQHKAVYRMDDRVSTNTSGNGLYDFIPFRDTPSLALAVVRTTEENQESKSDADGKCTGAKLVTSTLIKSAYGLTNNGLIFTGYPVIGYQHRLQSSGTCLDSLENSRITACAWDPKIKGEFFHQTTFSINLSLAKNFIQDVQKLVEIEPKALCGVEIYNGILMRYVTTSSAYLGKQKDAIDFDITYYRSKDPMTPRLHEGILEEIEQLALVKYGALPHWGKNRNIAFDGVMNKYKGAKEFLKVKNVYDPMGLFSSEWTDQVLGLKDEVTIVKEGCALEGLCICSEDIHCAPSKGYFCRPGKIFNDARI 582
Match NameStatsDescription
A0A1S4B1A6E-Value: 0.000e+0, PID: 68.43L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A1J6J1X9E-Value: 0.000e+0, PID: 68.61L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A1U7YAP2E-Value: 0.000e+0, PID: 68.82L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6J1A099E-Value: 0.000e+0, PID: 67.02L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6A1W3C4E-Value: 0.000e+0, PID: 68.55L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A061DT84E-Value: 0.000e+0, PID: 66.84L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A251U0I5E-Value: 0.000e+0, PID: 66.55L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A438IFB9E-Value: 0.000e+0, PID: 68.34L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A5N5F4J1E-Value: 0.000e+0, PID: 66.61L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A5N5F9U7E-Value: 0.000e+0, PID: 67.14L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.