Resource Type:
Polypeptide
Name:
DCAR_004816
Identifier:
DCAR_004816.mRNA-protein
Sequence:
MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHS
EQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQ
PLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAE
KVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFV
SAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLL
AAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRM
LFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPR
VSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPH
DYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVD
ASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQDEDSQLN
FSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDA
FPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGS
DGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKD
TPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSG
WQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLN
SVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY*
Sequence Length:
787
Sequence Checksum:
09951da7fec76d3f09ba500aaca968b7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_004816, derives from mRNA, DCAR_004816. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3H638 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1185.63 bits (3066), Expect = 0.000e+0
Identity = 606/790 (76.71%), Postives = 657/790 (83.16%), Query Frame = 0
Match: A0A1R3H638 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1185.63 bits (3066), Expect = 0.000e+0
Identity = 606/790 (76.71%), Postives = 657/790 (83.16%), Query Frame = 0
Query: 1 MRLSSASFNRQSPE---GEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQDEDSQLNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
MRLSSA FN Q+ E GEK LNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL +EQKE +LPA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN+KNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAK+VKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDP RW +SHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSF+G IKD+ LGMNSPLMWLRGD ++ QSLNFQG+GV+PWMQPR+DASMLG+QT D+YQAMAAAALQEMR A WP KR AV+ +LSSG Q +PQ++QLG TN S ++ L P+ GR+CSIDQ G ND LLFG NI+ +SLL+QNG+S L GVGSD +ST++PF SSNYMS AG DFS+NP++T SSCIDE+ FLQS EN Q + TFVKVYKSGSFGRSLDI+KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVPVQRLS+ CD+Y S+ +SRNLS+GIASVGSLDY
Sbjct: 1 MRLSSAGFNPQTQEDMAGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKFVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHG---------------------IKDDDLGMNSPLMWLRGD-ADRGMQSLNFQGIGVTPWMQPRLDASMLGLQT-DMYQAMAAAALQEMR------------------------------------AAWPSKRAAVE-VLSSGSPQCVVPQVEQLGPPQTNMSSNSISLPPFPGRECSIDQEGGNDPQSHLLFGVNIEPSSLLLQNGMSSLRGVGSDSDSTTIPF-SSNYMSAAGTDFSVNPAMTPSSCIDESGFLQSPENGGQGNLQSRTFVKVYKSGSFGRSLDISKFSSYNELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPVQRLSNGTCDDYVSRQDSRNLSSGIASVGSLDY 729
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B0NBW5 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1181.39 bits (3055), Expect = 0.000e+0
Identity = 610/825 (73.94%), Postives = 674/825 (81.70%), Query Frame = 0
Match: A0A0B0NBW5 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1181.39 bits (3055), Expect = 0.000e+0
Identity = 610/825 (73.94%), Postives = 674/825 (81.70%), Query Frame = 0
Query: 15 GEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQ--------------------------------------------------TQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGG-DNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKD-TPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
GEK LNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV A+TN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQKE +LPA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN+KNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVI L+KYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWE+EPLTTFPMYPSPFPLRLKRPWPPGLPSF+G +KD+ LGM+S LMWL+GD G + Q LNFQG+GVSPWMQPR+DASMLG+QT D+YQAMAAAALQEMRTVD S+ S +++QFQQ QDE S LN R+ ++T++ WP KR AVD +LSSG Q LPQ++QLG TN SQ++ L P+ GR+CSIDQGG D SH LLFG NI+ +S+L+QNG+SGL GVG+D +STS+PF SNYMS AG DFS+NP++ SSCIDE+ FLQS EN+ Q + TFVKVYKSGSFGRSLDI+ FS+Y ELRSELAHMFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVPVQRLS+ +CD+Y S+ +SRNLS+GIASVGSLDY
Sbjct: 48 GEKRVLNSELWHACAGPLVSLPHVGSRVVYFPQGHSEQVAATTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVITLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEVEPLTTFPMYPSPFPLRLKRPWPPGLPSFHG---------------------LKDDDLGMSS-LMWLQGDAG-RGMQHLNFQGIGVSPWMQPRLDASMLGLQT-DMYQAMAAAALQEMRTVDPSR-SGAASLQFQQPQNGPCRPAALSSPLQSIPSLGQQQSFSDSNGNPVTSPVVSPLHSLLGSFPQDESSNLLNLPRTTPVMTTSAWPSKRAAVD-VLSSGSPQCVLPQVEQLGPSQTNMSQNSISLPPFPGRECSIDQGGTDPQSH--LLFGVNIEPSSVLMQNGMSGLRGVGTDSDSTSIPFF-SNYMSTAGNDFSVNPAMAPSSCIDESGFLQSQENVGQSNPQTRTFVKVYKSGSFGRSLDISAFSNYNELRSELAHMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPVQRLSNGSCDDYVSRQDSRNLSSGIASVGSLDY 843
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G5Q4 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1177.16 bits (3044), Expect = 0.000e+0
Identity = 603/838 (71.96%), Postives = 664/838 (79.24%), Query Frame = 0
Match: A0A7J0G5Q4 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1177.16 bits (3044), Expect = 0.000e+0
Identity = 603/838 (71.96%), Postives = 664/838 (79.24%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVD-------TSKHSNPSAMQFQQTQDEDSQLNFSRSAALLTS--------------------------------------------AGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTP-PTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
MRLSSA FN QSPEGEK+CLNSELWHACAGPLVSLPA GSRVVYFPQGHSEQV STN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ E++ FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQT+MPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVI LAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPF LRLKRPWPPGLPSFNG IK++ LGM SPLMWLRGDNG+++ QSLN QG+GV+PW+QPR+DASMLG+Q D+YQAMA AALQ+ R +D T + + MQ Q Q F +SA L S AGWPPKRV VD L+S SQ +P ++Q HT++ Q+A L P+ GR+CS++Q G ND LLFG NIDS+SLL+QNG+S GVGS+ NST++ F+SS Y++ AG DFSL+ +T SSC+DE+ FLQS EN+ Q + P TFVKVYKSGSFGRSLDI+KFSSY ELRSEL+ MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGD PW FVNSVWCIKILSPQ+VQ+ GK GLELLNSVP QRLS++ CD+Y S ESRNLS+GI SVGSLDY
Sbjct: 1 MRLSSAGFNPQSPEGEKTCLNSELWHACAGPLVSLPAFGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADLETDEVYAQMTLQPLSLEQKDASFLPADLGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFSLRLKRPWPPGLPSFNG---------------------IKEDDLGMISPLMWLRGDNGDRSIQSLNLQGIGVTPWIQPRLDASMLGLQN-DMYQAMAGAALQDTRAMDLQFQQPQTFPNRPANLMQPQMPHQSQPQPVFHQSACRLLSMCQQRSFSDSNGNPTTNPIVSPLHGFMGETSHLLNLPRVDALSPAGWPPKRVGVDSLMSPRTSQYIMPPVEQFEPPHTSTQQNAISLPPFPGRECSVNQEGSNDPQTNLLFGVNIDSSSLLMQNGMSSKMGVGSESNSTAMHFSSSGYLNTAGNDFSLSAVVTPSSCVDESGFLQSPENVGQGNPPIRTFVKVYKSGSFGRSLDISKFSSYQELRSELSRMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDGPWQAFVNSVWCIKILSPQDVQQAGKHGLELLNSVPRQRLSNSGCDDYASPEESRNLSSGITSVGSLDY 816
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KHJ2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1123.61 bits (2905), Expect = 0.000e+0
Identity = 602/864 (69.68%), Postives = 653/864 (75.58%), Query Frame = 0
Match: A0A2J6KHJ2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1123.61 bits (2905), Expect = 0.000e+0
Identity = 602/864 (69.68%), Postives = 653/864 (75.58%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAF----QSLNFQGLGVSPWMQPRVD-------ASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQ-------------------------QTQDED----------SQLNFS----------------------RSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLG------SLHTNSSQDAFPLLPYNGRDCSIDQGGDND---SHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
M+LS+ F +Q PEGEK CLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV ASTN+EVDAH PN+P+LPPQL+CQLHN+TMHAD ETDEVYAQMTLQPLN++EQKE FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI DLDP RW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS FPLRLKRPWPPGLP++NG +K+E LGMNSP+MWLRG G QSLNFQGLG SPW+QPR D + T DIYQAMAAAALQEMR++D+ K SNPS +QFQ Q Q ++ SQ NFS RSA+LLTS GWP KRVAVDPLL SG SQS L Q++QLG + +TN SQ A L P+ GR+CSIDQ +N+ SH +LFG NID+++LL G+S PF SSN DFS+NP +T SSCID + F+QS EN Q + P TFVKVYKSG FGRSLDIAKFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFV+SVWCIKILSPQEVQ+MGKQGLELLNSVP++ PS+ ES NLS G+ASV SL+Y
Sbjct: 1 MKLSAVGFGQQLPEGEKRCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAASTNKEVDAHTPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLNSDEQKEAFLPADLGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPNRWLNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSQFPLRLKRPWPPGLPAYNG---------------------MKEEDLGMNSPIMWLRGGGGGGGGGDLGQSLNFQGLGGSPWLQPRFDGGGGGGIGMLGMQTTTDIYQAMAAAALQEMRSIDSVKQSNPSLLQFQHQPIPTGSMSQPAFIPENQHVSLLPQLQPQNPFTMGQFGSTSQSNFSDSNGNLLGPFSHDETSQLLNIPRSASLLTSTGWPAKRVAVDPLLVSGASQSLLHQVEQLGPPNTGLAQNTNLSQTAVSLPPFPGRECSIDQEPNNNDPQSHNNILFGVNIDNSNLL---GLSN-------------PFASSN-------DFSMNPMLTPSSCIDGSGFIQSQENTGQTNPPTRTFVKVYKSGCFGRSLDIAKFSSYHELRSELAQMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKQGLELLNSVPIRT---------PSRQESMNLSTGVASVSSLEY 811
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835DR76 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8413533.1}))
HSP 1 Score: 1110.52 bits (2871), Expect = 0.000e+0
Identity = 569/815 (69.82%), Postives = 638/815 (78.28%), Query Frame = 0
Match: A0A835DR76 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8413533.1}))
HSP 1 Score: 1110.52 bits (2871), Expect = 0.000e+0
Identity = 569/815 (69.82%), Postives = 638/815 (78.28%), Query Frame = 0
Query: 15 GEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQD--------------EDSQLNFSRSAALLTSAGWPPKRVAVDPLLSSGV-----------------------------SQSFLPQLQQLGSLH-------------------TNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKD-TPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEV-QEMGKQGLELLNSVPVQRLSSNNCDNY 765
GEK CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EV+AHIPN+P+LPPQL CQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +LPA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRL+AGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMH+GLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKY KAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI DLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPW PGLPSF+G IKD+ LG+NSPLMWLRGD G++ QS +FQG+GVSPWMQPR+DASMLG+Q D+YQAMAAAALQ MRT+D S H+ PS +QFQQ+Q+ + SQ + ++L +P +P+ +SGV S ++ P+ + LH T+ SQ + L P+ GR+CS+DQ G D LLFG NIDS+SLL+QNG+ L VGS+G+ST++PF +SN+MS G DFSLNP++T SSCIDE+ FLQS EN+ Q + FVKV+KSG FGRSLD+ +FSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPW EFVN+VWCIKILSPQEV Q MGK+GLELLNSVP QRLS+++CD+Y
Sbjct: 69 GEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVNAHIPNYPSLPPQLFCQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWTPGLPSFHG---------------------IKDDDLGINSPLMWLRGDGGDRGIQSPHFQGIGVSPWMQPRLDASMLGLQ-PDMYQAMAAAALQGMRTIDASNHAPPSLLQFQQSQNVPNSSASLMQRQMLQPSQPHHETISSLCQQQNFPDSN--GNPVTTSGVSPLHSLLGSFSQEETSNIFNLPRTNPLIPSAAWFPKRVAVEPLHPSGAAQCVLPQVEQLGPPQTSVSQHSISLPPFPGRECSVDQEGSTDPQSHLLFGVNIDSSSLLLQNGMPSLRDVGSEGDSTTMPFAASNFMSTTGTDFSLNPAMTTSSCIDESGFLQSPENVGQVNPQNRAFVKVHKSGYFGRSLDLTRFSSYQELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWCIKILSPQEVLQMMGKEGLELLNSVPFQRLSNSSCDDY 859
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3FUU9 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1103.97 bits (2854), Expect = 0.000e+0
Identity = 572/835 (68.50%), Postives = 654/835 (78.32%), Query Frame = 0
Match: A0A1R3FUU9 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1103.97 bits (2854), Expect = 0.000e+0
Identity = 572/835 (68.50%), Postives = 654/835 (78.32%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFL-PADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQD--------------EDSQ-------------------------------LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQR--LSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
MRLSS+ FN+Q+ EGEK CLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +L PA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLD+SQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMH+GLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWP LPSF H++ KD + +NS LMWL+G G+Q QSLNFQG GVSPWMQPR+D+S + D+YQAMAAAALQEMRTV++SK + S +QFQQ Q + SQ LN + S +++S+ K VAV+P LS G + LPQ++QLG+ +N S+ + L P+ GR+ S G D LLFG +IDS+SL++Q+G++ L +G++ +S S+P+ +SN+ S +G DF LN +T SSC+DE+ +LQS EN+ Q + P TFVKV+KSGSFGRSLDI+KFSSY ELRSELA MFGLEGQLEDP RSGWQLVFVDREND+LLLGDDPW EFVN+VW IKILSP EVQ+MGK+GL +SVP QR SSN+CD+Y ++ + R+ NGIAS+GSL+Y
Sbjct: 1 MRLSSSGFNQQTQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSALPSF------HAF---------------KDGDMSINSQLMWLQGGLGDQGIQSLNFQGFGVSPWMQPRLDSSSIPGVQPDLYQAMAAAALQEMRTVESSKIGSQSLLQFQQPQSTSNGPPALIQRQILQQSQTQNAFLQNLQENQTAAQSILGSLSQNGASHLLNLNGSNPIISSSALLSKPVAVEPQLS-GAASCVLPQVEQLGTAQSNVSELSNLLPPFPGREYSAYHGSA-DPQNNLLFGVSIDSSSLMLQHGMTNLKNIGNENDSMSLPYAASNFTSASGTDFPLNSDMTTSSCVDESGYLQSSENVDQVNPPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGLNPASSVPNQRHTTSSNHCDDYMTRQDLRSSGNGIASLGSLEY 812
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835IN00 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9620691.1}))
HSP 1 Score: 1102.43 bits (2850), Expect = 0.000e+0
Identity = 571/817 (69.89%), Postives = 645/817 (78.95%), Query Frame = 0
Match: A0A835IN00 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9620691.1}))
HSP 1 Score: 1102.43 bits (2850), Expect = 0.000e+0
Identity = 571/817 (69.89%), Postives = 645/817 (78.95%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRT-----------------------------VDTSKHSNPSAMQFQQTQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
MRL+SA F+ Q+ EGE+ CLNSELWHACAGPLVSLPA+GSRVVYFPQGHSEQV ASTN+EVDAH PN+P+LPPQLIC LHNITMHAD ETDEVYAQMTLQPL+ +EQK+ FLPADL + SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMH+GLLAAAAHAAATNSRFTIFYNPRA PSEFVIPL KYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDP RW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS F L L P F L++ + N + LG+NSPLMWLRGD+G++ +NFQG+G +PW+QPR DAS+LG+Q D+YQAMAAAALQEMRT V+T S ++ +Q+E S LN R+ +++ SA W PKR V+ LL SG + LPQL+QLG TN SQ + L P+ GR+CS+DQ D LLFG NIDS+SLL+QNG+ L GVGS+ +ST++PF +SN++S G DF LN S+T SSC+DE+ FL S +++ Q + P TFVKV+K+GSFGRSLDI +FSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPW EFVNSVWCIKILSPQEVQ+MGKQGLELLN+ VQRLSS CD+Y + +SR +SNG + +Y
Sbjct: 1 MRLASAGFSNQNSEGERRCLNSELWHACAGPLVSLPALGSRVVYFPQGHSEQVAASTNKEVDAHFPNYPSLPPQLICLLHNITMHADVETDEVYAQMTLQPLSPQEQKDSFLPADLGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPSRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSRFLLDLSDHGRQECPLFMVILLIRTLAVGNN------------DDLGINSPLMWLRGDSGDRG---MNFQGIGAAPWIQPRFDASLLGLQ-PDMYQAMAAAALQEMRTSQSQSQSPSLQPMSSLRQPQKFSDSNGNLVNTPSVSPLHSLLGSFSQEETSHLLNLQRNNSVVPSAAWLPKRTGVESLLPSG-APCVLPQLEQLGPPQTNGSQHSSGLPPFPGRECSVDQDVSTDPQNHLLFGVNIDSSSLLMQNGMPDLRGVGSETDSTTLPFAASNFLSGGGPDFPLNQSVTTSSCLDESGFLHSPDDVGQVNPPTRTFVKVHKTGSFGRSLDITRFSSYHELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWCIKILSPQEVQQMGKQGLELLNN--VQRLSSGICDDYVGRQDSRTMSNGSSISSETNY 798
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QA32 (Auxin-responsive protein {ECO:0000256|RuleBase:RU004549})
HSP 1 Score: 1079.32 bits (2790), Expect = 0.000e+0
Identity = 564/819 (68.86%), Postives = 626/819 (76.43%), Query Frame = 0
Match: A0A5N6QA32 (Auxin-responsive protein {ECO:0000256|RuleBase:RU004549})
HSP 1 Score: 1079.32 bits (2790), Expect = 0.000e+0
Identity = 564/819 (68.86%), Postives = 626/819 (76.43%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSN-------PSAMQFQQ------------------------TQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 786
MRLSSA F+ Q EGEK LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQL+CQLHN+TMHAD ETDEVYAQMTLQPLN +EQK+ +LPA+L + SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDF+QQPPAQELIARDLH+NEWKF RH+ VLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSF+G IKD+ LG+NSPLMWLRGDNG++ QS+NFQG+GV+PWMQPR+DASMLG+QT D+YQAMAAAALQEMR +S S PS Q Q QDE S L N RS L+ SAGWP KR AV+PLLSS SQ LPQ+++LG N S ++ L P+ GR+ S+DQ G D H LLFG NID +SLL+QNG+SGL GVGS+ ST++PF SSNYMS AG D SL+P++T SSCIDE+ FLQS EN+ Q + P TFVKVYKSGSFGRSLDI KFSSY ELR ELA MFGLEG+LEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVP+QRLSS++CD+Y S+ +SRN+++GI SVGSL+Y
Sbjct: 1 MRLSSAGFSPQHQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLNPQEQKDAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFAQQPPAQELIARDLHDNEWKF---------RHIFR---------------------------------------------VLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHG---------------------IKDDDLGINSPLMWLRGDNGDRGIQSMNFQGIGVTPWMQPRLDASMLGLQT-DMYQAMAAAALQEMRAFASSSQSQSPSLQAIPSLCQQQSFSDSNGNPVTSPIVSPLHSLLGSFPQDESSHLLNLPRSIPLMQSAGWPSKRAAVEPLLSSAASQCVLPQVEKLGQPQPNISPNSISLPPFPGREYSLDQEGSTDPHSHLLFGVNIDPSSLLMQNGMSGLRGVGSESESTTIPFPSSNYMSTAGNDVSLHPAMTPSSCIDESGFLQSPENVGQLNPPTRTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPIQRLSSSSCDDYTSRQDSRNMNSGITSVGSLEY 743
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1L7J2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1077.39 bits (2785), Expect = 0.000e+0
Identity = 574/860 (66.74%), Postives = 640/860 (74.42%), Query Frame = 0
Match: A0A2U1L7J2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1077.39 bits (2785), Expect = 0.000e+0
Identity = 574/860 (66.74%), Postives = 640/860 (74.42%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRG----------------------DNGEQAFQSLNFQGLGVSPWMQPR----------------------------------VDASMLGMQTADIY---QAMAAAALQEMRTVDTSKHSNPSAMQFQQTQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLG--SLHT------NSSQDAFPLLPYNGRDCSIDQGGDNDSH-RPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQ--KDTPP--TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNY-PSQHESRNLSNGIASVGSLDY 786
M+LS+ F + PEGEK CLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV ASTN+EVDAH PN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPLN+EEQKE FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI DLD RW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS FPLRLKRPWPPGLPSFNG ++++ LGMNSPLMW+ G D G Q+ +Q + + + R + +M +Q + + Q +Q+ +T S +NP ++ +Q+E S L N RS ++LTS GWP KRVAVDPLL SG SQS L Q++QLG S HT N SQ+A L P+ GR+CSI+Q +ND LLFG NI++++LL+Q+GISG+G G +G FS+NP +T SSCIDE+ FLQS +N Q + PP TFVKVYKSGSFGRSLDI KFSSY ELR ELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFV+SV+CIKILSPQE+QEMGKQGLELLNSVP+Q+ S + +NY P++ ES NLSNG+ASVGSL+Y
Sbjct: 1 MKLSAVGFGQPLPEGEKRCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAASTNKEVDAHTPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNSEEQKEAFLPADLGAGSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDQARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSQFPLRLKRPWPPGLPSFNG---------------------MREDELGMNSPLMWVPGDRGIQSLNFQGIGASPWMQPRLDAGMLGMQTNVYQAMAAAALQEMRGMDSSKASNPSLLQFQQPQMQTQMLHQSQPQPTFIPENMTQLQNPNPFSNQQQTLLPPMQQNQTFSDSNGNNPVSLLGSFSQEETSHLLNMPRSTSMLTSTGWPAKRVAVDPLLMSGGSQSLLHQVEQLGPPSSHTSLSQNNNLSQNAVSLPPFPGRECSIEQEPNNDPQSNNLLFGVNIENSNLLMQSGISGVGFPGGNG-------------------FSMNPIMTPSSCIDESGFLQSPDNAGQTGQTNPPNRTFVKVYKSGSFGRSLDIGKFSSYHELRGELAQMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVSSVYCIKILSPQEMQEMGKQGLELLNSVPIQKPSDSGYENYAPTRQESMNLSNGVASVGSLEY 820
BLAST of DCAR_004816 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1QN85 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1073.92 bits (2776), Expect = 0.000e+0
Identity = 572/860 (66.51%), Postives = 638/860 (74.19%), Query Frame = 0
Match: A0A2U1QN85 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1073.92 bits (2776), Expect = 0.000e+0
Identity = 572/860 (66.51%), Postives = 638/860 (74.19%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGKLILHSYYDNGNPHDYILPTRIKDESLGMNSPLMWLRG----------------------DNGEQAFQSLNFQGLGVSPWMQPR----------------------------------VDASMLGMQTADIY---QAMAAAALQEMRTVDTSKHSNPSAMQFQQTQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLG--SLHT------NSSQDAFPLLPYNGRDCSIDQGGDNDSH-RPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQ--KDTPP--TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNY-PSQHESRNLSNGIASVGSLDY 786
M+LS+ F + PEGEK CLNSELWHACAGPLVSLP VGSRVVYFPQGHSEQV ASTN+EVDAH PN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPLN+EEQKE FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI DLD RW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS FPLRLKRPWPPGLPSFNG ++++ LGMNSPLMW+ G D G Q+ +Q + + + R + +M +Q + + Q +Q+ +T S +NP ++ +Q+E S L N RS ++LTS GWP KRVAVDPLL SG SQS L Q++QLG S HT N SQ+ L P+ GR+CSI+Q +ND LLFG NI++++LL+Q+GISG+G +G FS+NP +T SSCIDE+ FLQS +N Q + PP TFVKVYKSGSFGRSLDI KFSSY ELR ELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFV+SV+CIKILSPQE+QEMGKQGLELLNSVP+Q+ S + +NY P++ ES NLSNG+ASVGSL+Y
Sbjct: 1 MKLSAVGFGQPLPEGEKRCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAASTNKEVDAHTPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNSEEQKEAFLPADLGAGSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDQARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSQFPLRLKRPWPPGLPSFNG---------------------MREDELGMNSPLMWVPGDRGIQSLNFQGIGASPWMQPRLDAGMLGMQTNVYQAMAAAALQEMRGMDSSKASNPSLLQFQQPQMQTQMLHQSQPQPTFIPENMTQLQNPNPFSNQQQTLLPPMQQNQTFSDSNGNNPVSLLGSFSQEETSHLLNMPRSTSMLTSTGWPAKRVAVDPLLMSGGSQSLLHQVEQLGPPSSHTSLSQNNNLSQNVVSLPPFPGRECSIEQEPNNDPQSNNLLFGVNIENSNLLMQSGISGVGFPAGNG-------------------FSMNPIMTPSSCIDESGFLQSPDNAGQTGQTNPPNRTFVKVYKSGSFGRSLDIGKFSSYHELRGELAQMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVSSVYCIKILSPQEMQEMGKQGLELLNSVPIQKPSDSGYENYAPTRQESMNLSNGVASVGSLEY 820
| Match Name | Stats | Description |
|---|---|---|
| A0A1R3H638 | E-Value: 0.000e+0, PID: 76.71 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A0B0NBW5 | E-Value: 0.000e+0, PID: 73.94 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A7J0G5Q4 | E-Value: 0.000e+0, PID: 71.96 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A2J6KHJ2 | E-Value: 0.000e+0, PID: 69.68 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A835DR76 | E-Value: 0.000e+0, PID: 69.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8413... [more] |
| A0A1R3FUU9 | E-Value: 0.000e+0, PID: 68.50 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A835IN00 | E-Value: 0.000e+0, PID: 69.89 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9620... [more] |
| A0A5N6QA32 | E-Value: 0.000e+0, PID: 68.86 | Auxin-responsive protein {ECO:0000256|RuleBase:RU0... [more] |
| A0A2U1L7J2 | E-Value: 0.000e+0, PID: 66.74 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A2U1QN85 | E-Value: 0.000e+0, PID: 66.51 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |