Resource Type:
Polypeptide
Name:
DCAR_002355
Identifier:
DCAR_002355.mRNA-protein
Sequence:
MLRLNHTSRPWSSPIPTQIYPSRRESMSCPCWWKQTSAIHARKWEENSCM
VWDKANNNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAV
FNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWN
FARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLED
CFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR
HNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTAT
ARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAA
ANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNT
CELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLY
NFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFI
APIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFEN
IVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLE
ILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKP
STKGGDIPFSIVVISDREWLLGEQISIRHTLYF*
Sequence Length:
684
Sequence Checksum:
3f6f6b7f012bde11bb85d4f36fa4e552
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002355, derives from mRNA, DCAR_002355. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AY23 ((Putative ion channel POLLUX-like 2 {ECO:0000313|EMBL:MPA61025.1}))
HSP 1 Score: 1011.13 bits (2613), Expect = 0.000e+0
Identity = 509/706 (72.10%), Postives = 583/706 (82.58%), Query Frame = 0
Match: A0A5B7AY23 ((Putative ion channel POLLUX-like 2 {ECO:0000313|EMBL:MPA61025.1}))
HSP 1 Score: 1011.13 bits (2613), Expect = 0.000e+0
Identity = 509/706 (72.10%), Postives = 583/706 (82.58%), Query Frame = 0
Query: 1 MLRLNHTSRPWSSP-IP--TQIYPSRRESMSCPCWWKQTSAI--------HARKWEENSCMVWDKAN-----------NNKILKVDLK-SRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE-QISIRHTLY 682
ML+L H+SRPW SP IP QI S+R+SM CPCWW Q+SA+ + KWE ++ DK + + K LK+DLK S H KLM++ +S Y L R+ Q S+N V NM++D+LL+VIRTSA TS F+C+S+SLNKPTPL+LD+ LPS++D+RW+FARLLYLFNI+LERNVATFLVVLLVACFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILLLSD+PRKQ+DKIA+NI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL G KY+ +RRGFQEAVVCG+YRRGK+ FHPNDDEVLEQ DKVLFIAP+ GK+KP + +V+SE+ S IHNL + KN ES + A ++K+R ENIV+RP K GSKASDW+ GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA GKLKN++V HRIGNPM+Y LK TI NI K KG DIP SIVVISDREWLLG+ + +H+ Y
Sbjct: 1 MLQL-HSSRPWISPRIPRFNQISSSKRKSMPCPCWWIQSSALCVSNLFINNEGKWESSTQRTSDKLDSPWNLNVLDNFHAKYLKMDLKYSPWGH---PAKLMIASMSSYFLLRVMQLSSANTVMNMVQDLLLYVIRTSADTSLRFSCMSSSLNKPTPLQLDVSLPSLQDVRWSFARLLYLFNIQLERNVATFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLAFILKQLNKYHEFAVRLGTATARRQRILLLSDIPRKQMDKIADNIAKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMASVPTIVEVSNFNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGTKYRHLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEQTDKVLFIAPVHGKRKPQIGFSNVVSEENSTIHNLEVLEKNGESPNHALEIKKVRLENIVRRPTKPGSKASDWSQGPKECILMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRA------GKLKNIQVSHRIGNPMNYDILKGTIMNIQKSFKKGKDIPLSIVVISDREWLLGDPSRADKHSAY 696
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXL4 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241} (Fragment))
HSP 1 Score: 1008.05 bits (2605), Expect = 0.000e+0
Identity = 498/669 (74.44%), Postives = 565/669 (84.45%), Query Frame = 0
Match: A0A5B7AXL4 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241} (Fragment))
HSP 1 Score: 1008.05 bits (2605), Expect = 0.000e+0
Identity = 498/669 (74.44%), Postives = 565/669 (84.45%), Query Frame = 0
Query: 22 SRRESMSCPCWWKQTSAI--------HARKWEENSCMVWDKAN-----------NNKILKVDLK-SRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWL 670
S+R+SM CPCWW Q+SA+ + KWE ++ DK + + K LK+DLK S H KLM++ +S Y L R+ Q S+N V NM++D+LL+VIRTSA TS PF+C+S+SLNKPTPL+LD+ LPS++D+RW+FARLLYLFNI+LERNVATFLVVLLVACFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILLLSD+PRKQ+DKIA+NI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL G KY+ +RRGFQEAVVCG+YRRGK+ FHPNDDEVLEQ DKVLFIAP+ GK+KP + +V+SE+ S IHNL + KN ES + A ++K+R ENIV+RP K GSKASDW+ GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA + GQGKLKNVKVFHRIGNPM+Y LKETI NI K KG DIP SIVVISDREWL
Sbjct: 2 SKRKSMPCPCWWIQSSALCVSNLFINNEGKWESSTQRTSDKLDSPWNLNVLDNFHAKYLKMDLKYSPWGH---PAKLMIASMSSYFLLRVMQLSSANTVMNMVQDLLLYVIRTSADTSLPFSCMSSSLNKPTPLQLDVSLPSLQDVRWSFARLLYLFNIQLERNVATFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLAFILKQLNKYHEFAVRLGTATARRQRILLLSDIPRKQMDKIADNIAKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMASVPTIVEVSNFNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGTKYRHLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEQTDKVLFIAPVHGKRKPQIGFSNVVSEENSTIHNLEVLEKNGESPNHALEIKKVRLENIVRRPTKPGSKASDWSQGPKECILMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRANNHPGQGKLKNVKVFHRIGNPMNYDILKETIINIKKSFKKGEDIPLSIVVISDREWL 667
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C488 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 496/690 (71.88%), Postives = 575/690 (83.33%), Query Frame = 0
Match: A0A5J5C488 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 496/690 (71.88%), Postives = 575/690 (83.33%), Query Frame = 0
Query: 6 HTSRPWSSP-IP--TQIYPSRRESMSCPCWWKQTSAIHAR--------KWEENSCMVWDKANNNKILKV-DLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGEQISI-RHTLY 682
H+SRPW +P IP QI S+R+SM CPCWW Q+SA+ +WE +S ++ L V DL Q Q K LM++ +S Y L R+ Q S+N + NM++D+L +VIRT ATS PFAC+S+SLNKPTPL LD+ LPS++D+RW+FAR+LYLFNI+LERNVATF VVLLVACFSFV+IGG LF+ RGSTQSLEDCFWEAWACL SSSTHL+QRTRVERVIGF+LAIWGILFYSR+LSTMTEQFR+NMQKLREGAQMQVLE+DHIIICGVNSHL FILKQL+KYHEFAVRLGTATARRQRILLLSDLPRKQ+DKIA+N+ KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPTKGDRY +DTDAFLSVLALQPLP M SVP IVEVSSS TCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIY+HLLNY+KNVFNL +F NL G+KY+Q+RRGFQEAVVCG+YRRGK+ FHPNDDEVLE+ DKVLFIAP+ GKKKP LA +V+ + S I NL + KN ES + A + K+R ENIVKRP K GSKASDW+ GPKE ILM+GWRPDV+EMI EYDNYLGPGSVLEILSDVP++DRN+A +LAG+GKLKNV+V HRIGNPM+Y LKETIT+I K KG D+P S+VVISDREWLL + + +H+ Y
Sbjct: 5 HSSRPWITPRIPRFNQI-SSKRKSMPCPCWWIQSSALRGSNFCLKNEGQWEASSQRASEEPEIPMHLNVLDLNYTPQDHQAK--LMITSMSSYFLLRVMQLNSANKLMNMVQDLLFYVIRTFVATSLPFACMSSSLNKPTPLHLDVSLPSLQDVRWSFARVLYLFNIQLERNVATFFVVLLVACFSFVIIGGFLFFKIRGSTQSLEDCFWEAWACLCSSSTHLKQRTRVERVIGFVLAIWGILFYSRVLSTMTEQFRNNMQKLREGAQMQVLESDHIIICGVNSHLNFILKQLDKYHEFAVRLGTATARRQRILLLSDLPRKQMDKIADNLAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTKGDRYEVDTDAFLSVLALQPLPKMASVPTIVEVSSSKTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYKHLLNYQKNVFNLCSFPNLAGIKYRQLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEETDKVLFIAPVHGKKKPQLAFSNVVKDQNSTIQNLEVLEKNGESPNHALEIRKVRLENIVKRPTKPGSKASDWSQGPKECILMLGWRPDVLEMIEEYDNYLGPGSVLEILSDVPMDDRNKANNLAGRGKLKNVRVLHRIGNPMNYDILKETITSILKAFKKGEDLPLSVVVISDREWLLRDPSRVDKHSAY 691
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ABR3 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 480/626 (76.68%), Postives = 543/626 (86.74%), Query Frame = 0
Match: A0A5J5ABR3 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 480/626 (76.68%), Postives = 543/626 (86.74%), Query Frame = 0
Query: 50 MVWDKANN--NKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE 673
M W+ +N K L++DLK Q K LMM+ +S Y L R+ Q S+N V NM++D+L +VIRT ATS PFACIS+SL KPTPL+LD+ LPS++D+RW+ ARLLYLFNI+LERNVA FLVVLLVACFSFV+IGG LF+ FRGSTQSLEDCFWEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQ R+NMQKLREGAQMQVLETDH+IICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQ+DKI ENI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQPLP M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL+G+ Y+Q+RRGFQEAVVCG+YRRGK+ FHP+DDEVLEQ DKVLFIAP+ GK+KP L +V+SE+ S +HNL + KN ES + A + K+R E+IV+RP K GSKASDW+ GPKE +LM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA +LA QGKLKNV+V HRIGNPM+Y LK TITNI K KG DIPFSIVVISD+EWLLG+
Sbjct: 1 MKWNVLDNCHAKYLRMDLKYSPQGHPAK--LMMASISSYFLPRVMQLSSANTVMNMVQDLLFYVIRTFVATSLPFACISSSLKKPTPLQLDVSLPSLQDVRWSVARLLYLFNIQLERNVAMFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCFWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQCRNNMQKLREGAQMQVLETDHVIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKIVENISKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPLPKMASVPTIVEVSNYNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLSGITYRQLRRGFQEAVVCGLYRRGKIYFHPHDDEVLEQTDKVLFIAPVHGKRKPQLTFSNVVSEENSTVHNLEVLEKNGESPNQALEISKVRLEHIVRRPAKPGSKASDWSQGPKECVLMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRASNLADQGKLKNVQVSHRIGNPMNYDILKGTITNIQKSFKKGKDIPFSIVVISDKEWLLGD 624
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B0R4 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241} (Fragment))
HSP 1 Score: 969.918 bits (2506), Expect = 0.000e+0
Identity = 484/653 (74.12%), Postives = 549/653 (84.07%), Query Frame = 0
Match: A0A5B7B0R4 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241} (Fragment))
HSP 1 Score: 969.918 bits (2506), Expect = 0.000e+0
Identity = 484/653 (74.12%), Postives = 549/653 (84.07%), Query Frame = 0
Query: 43 KWEENSCMVWDKAN-----------NNKILKVDLK-SRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE-QISIRHTLY 682
KWE ++ DK + + K LK+DLK S H KLM++ +S Y L R+ Q S+N V NM++D+LL+VIRTSA TS F+C+S+SLNKPTPL+LD+ LPS++D+RW+FARLLYLFNI+LERNVATFLVVLLVACFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILLLSD+PRKQ+DKIA+NI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQPL M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL G KY+ +RRGFQEAVVCG+YRRGK+ FHPNDDEVLEQ DKVLFIAP+ GK+KP L +V+SE+ S IHNL + KN ES + A ++K+R ENIV+RP K GSKASDW+ GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA GKLKN++V HRIGNPM+Y LK TI NI K KG DIP SIVVISDREWLLG+ + +H+ Y
Sbjct: 45 KWESSTQRTSDKLDSPWNLNVLDNFHAKYLKMDLKYSPWGH---PAKLMIASMSSYFLLRVMQLSSANTVMNMVQDLLLYVIRTSADTSLRFSCMSSSLNKPTPLQLDVSLPSLQDVRWSFARLLYLFNIQLERNVATFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLAFILKQLNKYHEFAVRLGTATARRQRILLLSDIPRKQMDKIADNIAKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPLQKMASVPTIVEVSNFNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGTKYRHLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEQTDKVLFIAPVHGKRKPRLGFSNVVSEENSTIHNLEVLEKNGESPNHALEIKKVRLENIVRRPTKPGSKASDWSQGPKECILMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRA------GKLKNIQVSHRIGNPMNYDILKGTIMNIQKSFKKGKDIPLSIVVISDREWLLGDPSRADKHSAY 688
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q3H0 ((Ion channel POLLUX-like {ECO:0000313|EMBL:PSS01409.1}))
HSP 1 Score: 961.829 bits (2485), Expect = 0.000e+0
Identity = 482/707 (68.18%), Postives = 563/707 (79.63%), Query Frame = 0
Match: A0A2R6Q3H0 ((Ion channel POLLUX-like {ECO:0000313|EMBL:PSS01409.1}))
HSP 1 Score: 961.829 bits (2485), Expect = 0.000e+0
Identity = 482/707 (68.18%), Postives = 563/707 (79.63%), Query Frame = 0
Query: 1 MLRLNHTSRPWSSPIPTQIY-----PSRRESMSCPCWWKQTSA-----------------IHARKWEENSCMVWDKANNNKI--LKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE-QISIRHTLY 682
MLRL+ + RPW S +P + PS+R+SM CWW ++SA ++E +S M +D +N L V +K+ ++ + K L+++ +SC L RM + + + +D+L +SA TSSPFACIS+SL KPTPL+LD+ LP + DIRW+FARLLYLFN++LERNVATF VVLL +CFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATAR+QRILLLSDLPRKQ+DK+A+NI KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPTK DRY +DT+AFLSVLALQPLP M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL NF NL L Y ++RRGFQEAVVCG+YR GK+ FHPNDDEVL++ DKVLFIAP+ GKKKP LA P+V+ E+ NL V KN +S + A M K+R +NIVKRP KSGSKASDW++G KE +LM+GWRPD+V+MI EYDNYLGPGSVLEILSDVP++DRNRA +LAGQ KLKNV+V HRIGNPMDY LKETITNI K DIP SIVV SDREWLLG+ + +H+ Y
Sbjct: 1 MLRLHASRRPWIS-LPVSRFNRILPPSKRQSMPFSCWWIKSSASCVSNLLTISEGKREASFQGTRYELDSPMSFDAPDNFDFEDLSVSIKNNMKGLHLK--LLIASVSCNLLLRMMPINVLSRLIKVPQDVLF----SSAVTSSPFACISSSLGKPTPLRLDVSLPPLEDIRWSFARLLYLFNMQLERNVATFFVVLLASCFSFVLIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVLGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARKQRILLLSDLPRKQMDKVADNIAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTKADRYEVDTNAFLSVLALQPLPHMASVPTIVEVSNLNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCNFPNLAELTYCELRRGFQEAVVCGLYRGGKIYFHPNDDEVLQKTDKVLFIAPVHGKKKPQLAYPNVVGEENMIADNLGVVEKNADSPNPALEMIKMRLQNIVKRPSKSGSKASDWSLGSKECVLMLGWRPDIVQMIEEYDNYLGPGSVLEILSDVPLDDRNRASNLAGQSKLKNVRVSHRIGNPMDYDFLKETITNIQNSLIKDEDIPLSIVVTSDREWLLGDPSRADKHSAY 700
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IRY0 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 951.044 bits (2457), Expect = 0.000e+0
Identity = 465/678 (68.58%), Postives = 548/678 (80.83%), Query Frame = 0
Match: A0A5C7IRY0 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 951.044 bits (2457), Expect = 0.000e+0
Identity = 465/678 (68.58%), Postives = 548/678 (80.83%), Query Frame = 0
Query: 23 RRESMSCPCWWKQTSAIHA--------RKWEENSCMVWDKAN---------NNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE-QISIRHTLY 682
R +S SC WW + ++HA RKWE +S W+K + N+K K+D Q Q K L+++ LS Y L R TQ N +++ +L VI+T AT SPFAC+SNSLNKP PLKLD+ LPS++D+RW+FARL+YLFN++LERNVATFL+VLLVACFSFV+IGG LF+ FR STQSLEDC WEAWACL SSSTHL+QRTR+ERVIGFILAIWGILFYSRLLSTMTEQFR+NMQ+LR+GAQMQV+ETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILL+SDLPRKQ+DK+A+NI KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPT+ DRY +DTDAFLSVLALQP+P M SVP IVEVS S+TCELLK+ISGLKVEPVENVASKLFVQCSRQ+GL+KIYRHLLNY+KNVFNL +F NL G+ Y+Q+RRGFQEAVVCG+YR GK+ FHPNDDE+++Q DK+LFIAP+ GKK P++A P + + + I +L V N +S + A + K R E IVKRP KSGSKASDWT GPKE IL++GWRPDVVEMI EY+NYLGPGSVLEILSDVP++DR RA + GQGKLKNV+V H+IGNPMDY TLKETI NI G D+P SIVVISDREWLLG+ + +H+ Y
Sbjct: 29 RGKSTSCHFWWFRQCSLHANRFNLHNARKWEASSQRTWNKMDICMPVSDNWNSKFFKLDQNDSSQGYQAK--LLITSLSSYLLLRFTQVNFVNTFKKIVQGLLPSVIQTFGATGSPFACMSNSLNKPVPLKLDVSLPSLQDVRWSFARLMYLFNMQLERNVATFLIVLLVACFSFVLIGGFLFFKFRDSTQSLEDCLWEAWACLCSSSTHLKQRTRIERVIGFILAIWGILFYSRLLSTMTEQFRNNMQRLRDGAQMQVMETDHIIICGVNSHLNFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQIDKLADNIAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTQTDRYEVDTDAFLSVLALQPIPKMESVPTIVEVSKSSTCELLKSISGLKVEPVENVASKLFVQCSRQQGLVKIYRHLLNYQKNVFNLCSFPNLAGITYRQLRRGFQEAVVCGLYRNGKIYFHPNDDEIVQQPDKILFIAPVHGKKNPHIAYPTTV-KGTNNIQDLEIVKNNGDSPNHALELRKTRLEIIVKRPNKSGSKASDWTSGPKECILLLGWRPDVVEMIEEYNNYLGPGSVLEILSDVPLDDRKRASNAVGQGKLKNVRVSHKIGNPMDYETLKETIVNIQNSFNVGEDMPLSIVVISDREWLLGDPSRADKHSAY 703
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7T781 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 937.947 bits (2423), Expect = 0.000e+0
Identity = 466/703 (66.29%), Postives = 560/703 (79.66%), Query Frame = 0
Match: D7T781 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 937.947 bits (2423), Expect = 0.000e+0
Identity = 466/703 (66.29%), Postives = 560/703 (79.66%), Query Frame = 0
Query: 1 MLRLNHTSRPWSSPIPTQ---IYPSRRESMSCPCWWKQTSAIHARKW----------------EENSCMVWDKANNNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSC-SLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE-QISIRHTLY 682
MLRL +S PW+SP ++ I S+R+S+ C CWW Q+SA+ A K+ +++ + +N K DLK+ QG D +M + Y L R+TQ S+N + M+++ LL V+ T S PFAC+SNSLNKPTPL+LD+ LPS++DI+WNF+RL+YLFNIRLERNVAT VVLLVACFSFV+IGGLL + FR +TQSLEDCFWEAWACLISSSTHL+QRT + RVIGF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQV+E DHI+ICG+NSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQ+DK+A+NI KDL+HID+LTKSC SLS+T SFERAAA+KARAIIILP GDRY +DTDAFLSVLALQP+ M SVP IVEV++S T ELLK+ISGLKVEPVENVASKL VQCSRQKGLIKIY+HLLNYRKNVFNL++F NL G+KY+Q+RRGF+ AVVCG+YR GK+ FHPNDDEVL Q DKVLF+ P+PGK++P LA PDV E+ + I NL + KN + +A + K+R ENIVKRP K GSKASDW++GPKE +L++GWR DVVEMI EYDNYLGPGSVLEILSDVP++DRNRA + AG GK+KN++V HR+GNPM+Y TL+ETI NI KG +P SIVVISDRE LLG+ + +H+ Y
Sbjct: 1 MLRL-QSSPPWTSPQVSRLNRISSSKRKSVPCDCWWIQSSALPANKFLMHNRGKCKASLQRTLDKSYSPTYLDGSNAGCFKEDLKN---GSQGYDAKLMIGSTSYFLLRLTQLYSANRLMKMVQN-LLSVVCTFGNGSLPFACMSNSLNKPTPLRLDVSLPSLQDIKWNFSRLIYLFNIRLERNVATSFVVLLVACFSFVVIGGLLLFKFRDNTQSLEDCFWEAWACLISSSTHLKQRTHIGRVIGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVMEADHIVICGINSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKLADNIAKDLSHIDVLTKSCSSLSLTKSFERAAADKARAIIILPANGDRYEVDTDAFLSVLALQPISKMTSVPTIVEVTNSQTAELLKSISGLKVEPVENVASKLLVQCSRQKGLIKIYKHLLNYRKNVFNLFSFPNLAGIKYRQLRRGFEGAVVCGLYRNGKIYFHPNDDEVLRQTDKVLFVGPVPGKREPQLAYPDV-KEETNTIQNLEVLEKNGGASHYALDLIKMRVENIVKRPTKPGSKASDWSLGPKERVLLIGWRQDVVEMIEEYDNYLGPGSVLEILSDVPLDDRNRASNFAGHGKVKNIQVSHRVGNPMNYDTLRETILNIRSSFKKGESVPLSIVVISDRECLLGDPSRADKHSAY 697
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WLT8 ((putative ion channel POLLUX-like 2 isoform X5 {ECO:0000313|RefSeq:XP_027116409.1}))
HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0
Identity = 456/628 (72.61%), Postives = 531/628 (84.55%), Query Frame = 0
Match: A0A6P6WLT8 ((putative ion channel POLLUX-like 2 isoform X5 {ECO:0000313|RefSeq:XP_027116409.1}))
HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0
Identity = 456/628 (72.61%), Postives = 531/628 (84.55%), Query Frame = 0
Query: 57 NNKILKVDLKSRLQHVQGKD-KLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGEQISI-RHTLY 682
+++ K +++S Q VQGK KL++++++ +SL R+ + +S++ N ++ + ++I T SSPFAC+SNS++KPTPL+LD+ LP RDIRWN +RL+YLFN++LERNVATF VVLL++C SFV+IGGLLFYN RGS QSLE+CFWEAWACL SSSTHL+QRTR+ER+IGF+LAIWGILFYSRLLSTMTEQFR MQ LREGAQMQVLETDHIIICG+NSHLTFILKQLNKYHEFAVRLGTA ARRQRILLLSDLPRKQ+DKIA+NI KDLNHID+L+KSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQPL +M SVP IVEVSSSNTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL+ +L GLKY+Q+R GFQEAVVCG+YR GK+ FHPNDDEVL Q+DKVLFI+PI GKKKP LA + ED + + + K+ SLS A + K R I KR KSGSKASDW++GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLE+LSDVP++DRN+A LAGQGKLK+V+V HRIGNPMDY TLK+TITNI K K DIPFSIVVISDREWLLGE +H+ Y
Sbjct: 19 SDRFSKTEIQSIFQLVQGKHAKLILAFMTSFSLARLIEFLSNSVKLNAIQQLFFYMICTYPVKSSPFACMSNSMSKPTPLQLDVSLPPFRDIRWNLSRLIYLFNMQLERNVATFFVVLLISCISFVIIGGLLFYNSRGSKQSLEECFWEAWACLCSSSTHLKQRTRIERIIGFVLAIWGILFYSRLLSTMTEQFRGKMQTLREGAQMQVLETDHIIICGINSHLTFILKQLNKYHEFAVRLGTANARRQRILLLSDLPRKQIDKIADNIAKDLNHIDVLSKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPLQEMASVPTIVEVSSSNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLHCLPDLVGLKYRQLRCGFQEAVVCGLYRNGKIHFHPNDDEVLLQNDKVLFISPIHGKKKPRLAISSGLDEDDNTLPDPETHKKDGRSLSQAFEITKARLGKIAKR-SKSGSKASDWSLGPKECILMLGWRPDVVEMIKEYDNYLGPGSVLEVLSDVPMDDRNKASKLAGQGKLKHVRVSHRIGNPMDYDTLKDTITNIWKSFKKDEDIPFSIVVISDREWLLGEPAKADKHSAY 645
BLAST of DCAR_002355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XKQ7 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 936.791 bits (2420), Expect = 0.000e+0
Identity = 459/677 (67.80%), Postives = 542/677 (80.06%), Query Frame = 0
Match: M5XKQ7 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})
HSP 1 Score: 936.791 bits (2420), Expect = 0.000e+0
Identity = 459/677 (67.80%), Postives = 542/677 (80.06%), Query Frame = 0
Query: 14 PIPTQIYPSRRESMSCPCWWKQTSAIHARKW---EENSCMVWDKANNNKI-------LKVDLKSRLQHVQGKD-------KLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGE 673
P P + S+R+SM C WW ++S++HA + C V + NK+ + D +L + K+ M +S Y R+ + N ++++ L V++ A + PFAC+SNSLNKP PL+LD+ LPS +DIRW+FARLLYLFNI+LE+NVATF +VLLVACFSFV+IGG LF+ FRGS +SLEDCFWEAWACL SSSTHL+QRTRVERVIGFILAIWGILFYSRLLSTMTEQFR+NM +LREGAQMQVLE+DHIIICGVNSHL+FILKQLNKYHEFAVRLGTATARRQRILL+SDLPRKQ+DK+A+N+ KDL HIDILTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P+M SVP IVEVSSSNTCELLK+ISGLKVEPVEN ASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F +L GLKY+++R GFQEAVVCG+YR GK+DFHP DDE+L++ DKVLF+AP+ G KKP +A +V+ E + NL KN + S + K R ENIV+RP K GSK SDWT+GPKE+IL++GWRPD++EMI EYDNYLGPGSV+EILSDVP++DRNRAR +AGQGKLKNVKV HRIGNPM++ TL+ETI NI K S K DIP SIVVISDREWLLG+
Sbjct: 20 PTPNRFSSSKRKSMPCQFWWIKSSSLHASNFIVQNRGKCEVSSQRAGNKLGSTVYINIADDSNDKLPSTDQINISQVHLTKVTMGLVSLYLSIRLAKSNVFNTFIKIVQEKLPSVVQNFGAATLPFACVSNSLNKPMPLELDVSLPSFQDIRWSFARLLYLFNIQLEKNVATFFLVLLVACFSFVVIGGFLFFKFRGSNESLEDCFWEAWACLCSSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMYRLREGAQMQVLESDHIIICGVNSHLSFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNLAKDLIHIDILTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPNMESVPTIVEVSSSNTCELLKSISGLKVEPVENGASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPSLAGLKYRRVRHGFQEAVVCGLYRNGKIDFHPYDDEILQETDKVLFVAPVNGSKKPNVAYSNVVREIGNANENLEDQEKNGSTQSRDLQL-KTRLENIVRRPNKPGSKGSDWTLGPKEFILLLGWRPDIIEMIEEYDNYLGPGSVVEILSDVPLDDRNRARQVAGQGKLKNVKVSHRIGNPMNFDTLQETIMNIQK-SLKNKDIPLSIVVISDREWLLGD 694
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AY23 | E-Value: 0.000e+0, PID: 72.10 | (Putative ion channel POLLUX-like 2 {ECO:0000313|E... [more] |
| A0A5B7AXL4 | E-Value: 0.000e+0, PID: 74.44 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| A0A5J5C488 | E-Value: 0.000e+0, PID: 71.88 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| A0A5J5ABR3 | E-Value: 0.000e+0, PID: 76.68 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| A0A5B7B0R4 | E-Value: 0.000e+0, PID: 74.12 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| A0A2R6Q3H0 | E-Value: 0.000e+0, PID: 68.18 | (Ion channel POLLUX-like {ECO:0000313|EMBL:PSS0140... [more] |
| A0A5C7IRY0 | E-Value: 0.000e+0, PID: 68.58 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| D7T781 | E-Value: 0.000e+0, PID: 66.29 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
| A0A6P6WLT8 | E-Value: 0.000e+0, PID: 72.61 | (putative ion channel POLLUX-like 2 isoform X5 {EC... [more] |
| M5XKQ7 | E-Value: 0.000e+0, PID: 67.80 | Castor_Poll_mid domain-containing protein {ECO:000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |