Resource Type:
Polypeptide
Name:
DCAR_003870
Identifier:
DCAR_003870.mRNA-protein
Sequence:
MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGA
TLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNN
HKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSET
VDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVN
LLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDC
FLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWS
SRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNK
LEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCST
ILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCV
DPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLV
ENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQE
DELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLV
VKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFA
SAYSQAFEVIHSATP*
Sequence Length:
666
Sequence Checksum:
41b4c91c8eb4980411a61af7ff5b13fb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003870, derives from mRNA, DCAR_003870. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B8N2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA65340.1}))
HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 450/663 (67.87%), Postives = 538/663 (81.15%), Query Frame = 0
Match: A0A5B7B8N2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA65340.1}))
HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 450/663 (67.87%), Postives = 538/663 (81.15%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHSA 663
MGC ASRID++ERVRICKERKRLMKQ+V FRG FA+AQ+ YL ALKNTG TLRQFTES+SLEL+ PFG PPSPPPPLPPSPPPPP FSPD RK NN K++ +QEE IE DEDNSCTPPPPP+PSSSWEFWDPFG S+ H ++KSETV+Q VEEENWAE NTEFEEE+ EEE + +VN++SEKP E DDNSS++SW+TKDT+D+ MVV SK+TLA IV+ELDD FLK S+GGKNI +LMDI D+ LWQ +KENKRKR NS KVFS+LTWSWSS+SL TRD ++ PSE C GAHCITL KL EE +LYKEVK+EE+ +LEH++KSL LQKQ+ ED DWTKTEKTR SVE+LQS+II LQQSISR CS+I LI+EELHPQL ALTSGLMHMW+ M++CHQVQ HISQQVNHL+N Q +DPTT+YH+QAAAQLK+EV+SW +SFC+L+K QREYV +SRWI+LTDCLV++ S+ S VH LCE W LALDKLP+KA EAIK+ LS I++IVLQQE+EL+L ++S KLEKKL E NS+AEME+K EG F +E+PH+ LSPKHPL VKRAK+E LKK+VDDEKA+YL+SV+VT+ M LNNLKTSLPN+F+ALMGF++AY+Q+FE IH
Sbjct: 1 MGCVASRIDQEERVRICKERKRLMKQLVGFRGEFADAQMAYLRALKNTGVTLRQFTESESLELETTPFGLALPPSPPPPLPPSPPPPPIFSPDLRKFENNQKVEVAQEEIIEIDEDNSCTPPPPPIPSSSWEFWDPFGPSSPHCQKKSETVEQ------------------VEEENWAETNTEFEEEDQEEEVVTNKVVNVISEKPKTVELIDDNSSMVSWYTKDTTDIPMVVWRSKKTLAGIVKELDDYFLKGSAGGKNISILMDINAGDTNLWQNSKENKRKRCNSAKVFSSLTWSWSSKSLQFTRDAVESCGPSEPCGLGAHCITLAKLFVEEQRLYKEVKDEEVTRLEHQRKSLLLQKQEDEDYDWTKTEKTRLSVETLQSDIICLQQSISRICSSISKLIDEELHPQLIALTSGLMHMWRTMYECHQVQNHISQQVNHLTNQQSMDPTTNYHRQAAAQLKTEVSSWYNSFCELMKSQREYVTALSRWIQLTDCLVDDCQRSASSSLVHTLCEEWQLALDKLPDKAVSEAIKNLLSGINSIVLQQEEELNLQKKSGKLEKKLLSEFNSLAEMEIKLEGIFAIEHPHTVLSPKHPLSVKRAKIEVLKKRVDDEKARYLNSVKVTQAMILNNLKTSLPNIFQALMGFSNAYTQSFEAIHGC 645
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZP00 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8519398.1}))
HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0
Identity = 421/665 (63.31%), Postives = 520/665 (78.20%), Query Frame = 0
Match: A0A5J4ZP00 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8519398.1}))
HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0
Identity = 421/665 (63.31%), Postives = 520/665 (78.20%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDT---SDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGC ASRID++ERVRICKERKRLMKQ+V FRG FA+AQ+ YL ALKNTG TLRQFTES+SLEL+ PFG PP PPPPLPPSPPPPP FSPD RK +N K+ +QEE IE DEDN CTPPPPP+PSSSW FWDP+ S+ ++KSETV+ VEEENWAEANTEFEEE+ + E + +VN+ EKP E DDNSS++SW+TKDT +DM MV K+TLA I++ELDD FLKAS+GGK+I ++MDI D+ LWQ +KEN R+ SNS KVF+ALTW+WSS+SL TRD+++ P E C GAHCITL KL EE +LYKE+K+EE+ +LEH++KSL LQKQ+ E DWTKT++TR SVE+LQS+II LQQSISR CS+I LI+EELHPQL ALTSGLMHMW+ M++CHQVQ HISQQVNHL+N Q +DPTT+YH+QAAAQLK+EV+SW SFC+L+K Q+EYVR +S WI+LT+CLV++ S SAVH LCE W LALD+LP+K EAIK+ LS IH+I+LQQE+EL+L ++S KLEKKL+ +LNS+AEME K EG E+ H+ LSP HPL VKR K+E LKK+VDDEKA+YL+SV+VT+ MTLNNLK SLPN+F+AL+GF+SAY+++FE IH
Sbjct: 1 MGCVASRIDQEERVRICKERKRLMKQLVGFRGEFADAQMAYLRALKNTGVTLRQFTESESLELETAPFGLALPPPPPPPLPPSPPPPPPFSPDSRKFEDNQKVKVAQEEIIEIDEDNGCTPPPPPIPSSSWHFWDPYDPSSPQSQKKSETVEP------------------VEEENWAEANTEFEEEDHDGEVVTNKVVNIFHEKPKTVELIDDNSSMVSWYTKDTGHTTDMPMVAWGKKKTLAGIIKELDDYFLKASAGGKDIAIIMDINAGDTSLWQNSKENMRRTSNSAKVFNALTWNWSSKSLQFTRDVVESCGPREPCGLGAHCITLEKLFAEEQRLYKEIKDEEVTRLEHQRKSLLLQKQEDEGYDWTKTDQTRLSVETLQSDIICLQQSISRICSSISKLIDEELHPQLIALTSGLMHMWRTMYECHQVQNHISQQVNHLTNQQSMDPTTNYHRQAAAQLKTEVSSWYKSFCELMKSQQEYVRALSGWIQLTNCLVDDCQRSRSSSAVHTLCEEWQLALDRLPDKVVSEAIKNLLSGIHSIILQQEEELNLQKKSVKLEKKLQTQLNSLAEMETKLEGIITTEHAHTVLSPNHPLSVKRTKIEVLKKRVDDEKARYLNSVQVTQAMTLNNLKISLPNIFQALIGFSSAYTRSFEDIHG 647
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HLW6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55841.1}))
HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0
Identity = 428/662 (64.65%), Postives = 516/662 (77.95%), Query Frame = 0
Match: F6HLW6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55841.1}))
HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0
Identity = 428/662 (64.65%), Postives = 516/662 (77.95%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGCAASRIDK+ERV++CKERK+LMK +V FRG FA+AQL YL ALKNTG TLRQFTES+SLEL++ PFG PPSPPPPLPPSPPPPP FSPD RK NNN K + +QEESIE ED+SCTPPPPP+ SS WEFWDPF S K N+ + VEEENWAE NTEFEEE+ EEEA + ++LL EKPH E DDNSS++SWHTKDT+DMAMVV SK+TL IV+ELDD FLKAS+GG +I VLMDI D+ L Q KENKRKR NS KVFSAL+WSWSS+SL RD + S P+E C PG HCITL KL EE +LYKEVK+EE+ KL HE+KSL LQKQ+ EDQDWTK EKTR+ VESLQS++I LQQSISRTCS+IL LI++EL+PQL ALTSGLMHMW+ M++CHQVQ HISQQVNHL+N+Q D TTD+H+QA AQL++EVTSW +SFCKL+K Q+EYVR + RWI+LT+ L +S S V LCE W LALD+ P+K A EAIK+ LSAIH+IVLQQ +E +LL++S+KLE++L++ELNS+ E+E K EGS V + H LSPKHPL VKR K EAL+K+V+D KAKYL+SV+V++ MT+NNL+TSLPNVF+ALMGF+S +QAFE +HS
Sbjct: 1 MGCAASRIDKEERVQVCKERKKLMKHLVGFRGEFADAQLAYLRALKNTGVTLRQFTESESLELENTPFGLVLPPSPPPPLPPSPPPPPPFSPDLRKFNNNQKDEIAQEESIEIGEDDSCTPPPPPISSSHWEFWDPFSTSLP-----------------PREKNNATAEEPVEEENWAETNTEFEEEDQEEEAVVNNGLHLLPEKPHTIELVDDNSSMVSWHTKDTADMAMVVWRSKKTLTGIVKELDDYFLKASAGGNDIAVLMDINRGDTFLQQDFKENKRKRCNSAKVFSALSWSWSSKSLQFARDAAESSGPNEPCMPGVHCITLDKLYAEERRLYKEVKDEEITKLLHERKSLLLQKQEEEDQDWTKIEKTRSCVESLQSDMIALQQSISRTCSSILKLIDDELYPQLVALTSGLMHMWRTMYECHQVQKHISQQVNHLTNHQIRDSTTDFHRQATAQLETEVTSWYNSFCKLMKSQQEYVRALCRWIQLTERLASDSQQSHCAPVVRTLCEEWQLALDRFPDKVASEAIKNLLSAIHSIVLQQAEECNLLKKSEKLERRLQKELNSLFELENKLEGSI-VGDTHLSLSPKHPLSVKRTKTEALRKRVEDAKAKYLNSVQVSQAMTVNNLQTSLPNVFQALMGFSSVCAQAFEAVHS 644
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QAK9 ((RB1-inducible coiled-coil protein like {ECO:0000313|EMBL:PSS04943.1}))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 416/662 (62.84%), Postives = 518/662 (78.25%), Query Frame = 0
Match: A0A2R6QAK9 ((RB1-inducible coiled-coil protein like {ECO:0000313|EMBL:PSS04943.1}))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 416/662 (62.84%), Postives = 518/662 (78.25%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGC ASRIDK+ERVRICKER+ LMKQ+V FRG FA+AQL YL +LKNTG TLRQFTES+SLEL++ FG PPSPPPPLPPSPPPPP FSPD RK ++ +++ +QEE IE +E+NSCTPPPP +PSSSW+FWDPF S+ H ++KSE + +EEENWAEANTEFEEE E+ + L NLL EKP E DDNSS++SWHTKDT+DMAMV+ SK+TLA I++ELDD FLKAS+GGK+I +L+DI D+ +WQ E KR R S VF+ALTWSWSS+SL TR +F PSE C+ GAH ITL KL EE +LYK++K+EE+ KLEHEKKSL LQKQ++ED+DWTKTEKTR SVESL+S++I L++SISR+CS+IL +I+EELHPQL +TSGLM +W+ M++CHQVQ HISQQV+HL N + VDPTTDYH+QAA QLK+EVT W +SF ++IK Q EYVR + RWI+LT C VE+S S SAVH LC+ W ALD+LP+K A EAIKSFLSAI +IVLQQ++EL+L ++SDKLE+KL+RELNS+A ME+K + N+++ +SGLSPKHPL VKRAKVE L K+V++EKAKYL+SV T+ MTLNNL+TSLPNVF+ALMGF+SAY+Q E + S
Sbjct: 1 MGCVASRIDKEERVRICKERRMLMKQLVGFRGEFADAQLAYLRSLKNTGVTLRQFTESESLELENTTFGIALPPSPPPPLPPSPPPPPNFSPDSRKFEDSRRVEVAQEEIIEMNEENSCTPPPPLVPSSSWDFWDPFAPSSPHCEKKSEVEET------------------IEEENWAEANTEFEEEQEEDIFENKTL-NLLPEKPRTVELIDDNSSMVSWHTKDTADMAMVIWRSKKTLAGIIKELDDYFLKASAGGKDIVLLVDINSSDTFIWQ---EEKRIRCGSANVFNALTWSWSSKSLQCTRSAAEFYGPSEPCRLGAHSITLEKLYVEEQRLYKDIKDEEITKLEHEKKSLLLQKQEVEDRDWTKTEKTRLSVESLESDVISLKESISRSCSSILKVIDEELHPQLITITSGLMSLWRTMYECHQVQNHISQQVSHLINQESVDPTTDYHRQAAFQLKNEVTFWYNSFRRVIKSQGEYVRALCRWIRLTYCFVEDSQQSGRASAVHGLCQEWQQALDRLPDKVASEAIKSFLSAIQSIVLQQQEELNLKKKSDKLERKLQRELNSLAAMEIKLVETSNIDDANSGLSPKHPLFVKRAKVETLTKRVNEEKAKYLNSVRATKAMTLNNLRTSLPNVFQALMGFSSAYTQTLEAMLS 640
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UEK4 ((nitrate regulatory gene2 protein-like {ECO:0000313|RefSeq:XP_027088332.1, ECO:0000313|RefSeq:XP_027088333.1}))
HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 394/662 (59.52%), Postives = 511/662 (77.19%), Query Frame = 0
Match: A0A6P6UEK4 ((nitrate regulatory gene2 protein-like {ECO:0000313|RefSeq:XP_027088332.1, ECO:0000313|RefSeq:XP_027088333.1}))
HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 394/662 (59.52%), Postives = 511/662 (77.19%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGC AS IDK+ERVRICKERKR++K+++ R +A++QLEYL AL+NTG TLRQFTES+SLE++D G PPSPPPPLPPSPPPPP+FSPD R +NNH + S+EE I+ DEDNS TPPPP L S+SWE+WDPFG+++ + ++KS+ ++ QVEEENWAEANTEFEEE+ + + V++ K + D+NSSVMSWHTKDT+D++MV+ K+TL+ I+R++DD F+KAS+GGK++ V +D V DS L+Q ENKRKRSNS KVF+ALTWSWSS+SL TRD D PS+ CKPGAHC+TL KL D E KL++EVKEEE+ KLEHE+KSL LQK + ED DW+KT+K R+ VESLQS+I+ LQQS S TCSTIL LI+EELHPQL L SGLM MW++M++CHQVQ HI+QQ+NHL N Q ++PT++Y +QAAAQLK+EV SW +S C+L+K QREYV + RW++LT+CLV+N S SAV L + W +ALDKLP+K A EAI S LSA+ +IVLQQE+E++L +RSDKLE++L RELN ++EMEMKFEGSF E + L PKHPL VKRAK+E LKK+VDDEK+KY++S++ TR M LNNL+TSLPNVF+ALM F+++Y+++F+ + S
Sbjct: 1 MGCVASSIDKEERVRICKERKRILKRLLVLRKQYADSQLEYLRALRNTGVTLRQFTESESLEIEDGALGHALPPSPPPPLPPSPPPPPSFSPDLRNCHNNHHMKTSEEEIIDIDEDNSHTPPPPVL-STSWEYWDPFGSTSPNCQQKSKIEEE-----------------QVEEENWAEANTEFEEEDQVDVVAVNNTVDITPVKKQTASVVDENSSVMSWHTKDTADLSMVIWGRKKTLSGIIRDIDDYFVKASAGGKDVAVFLDFNVADSPLYQSINENKRKRSNSAKVFNALTWSWSSKSLQSTRDAGDTCGPSDPCKPGAHCVTLAKLYDAERKLHREVKEEELTKLEHERKSLMLQKLEEEDHDWSKTDKARSVVESLQSDILSLQQSNSSTCSTILNLIDEELHPQLIVLISGLMCMWRRMYECHQVQNHIAQQLNHLVNQQNMEPTSEYDRQAAAQLKTEVNSWYNSLCRLVKSQREYVSALCRWVQLTNCLVDNGQGSVSSSAVCTLSKQWLVALDKLPDKRALEAINSLLSAVRSIVLQQEEEVNLYKRSDKLERRLERELNLLSEMEMKFEGSFTNEEMQTVLGPKHPLSVKRAKIEVLKKRVDDEKSKYINSIQNTRAMILNNLQTSLPNVFQALMAFSNSYTESFDTVLS 644
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VGF5 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19649.1}))
HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 392/662 (59.21%), Postives = 510/662 (77.04%), Query Frame = 0
Match: A0A068VGF5 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19649.1}))
HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 392/662 (59.21%), Postives = 510/662 (77.04%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGC S IDK+ERVRICKERKR++K+++ R +A++QLEYL AL+NTG TLRQFTES+SLE++D G PPSPPPPLPPSPPPPP+FSPD R +NNH + S+EE I+ DEDNS TPPPP L S+SWE+WDPFG+++ + ++KS+ ++ Q+EEENWAEANTEFEEE+ + + V++ K + D+NSSVMSWHTKDT+D++MV+ K+TL+ I+R++DD F+KAS+GGK++ V +D V DS L+Q ENKRKRSNS KVF+ALTWSWSS+SL TRD D PS+ CKPGAHC+TL KL D E KL++EVKEEE+ KLEHE+KSL LQK + ED DW+KT+K R+ VESLQS+I+ LQQS S TCSTIL LI+EELHPQL L SGLM MW++M++CHQVQ HI+QQ+NHL N Q ++PT++Y +QAAAQLK+EV SW +S CKL+K QREYV + RW++LT+CLV+N S SAV L + W +ALDKLP+K A EAI S LSA+ +IVLQQE+E++L +RSDKLE++L RELN ++EMEMKFEGSF E + L PKHP VKRAK+E LKK+VDDEK+KY++S++ TR M LNNL+TSLPNVF+ALM F+++Y+++F+++ S
Sbjct: 1 MGCVVSSIDKEERVRICKERKRILKRLLVLRKQYADSQLEYLRALRNTGVTLRQFTESESLEIEDGALGHALPPSPPPPLPPSPPPPPSFSPDLRNSHNNHHMKTSEEEIIDIDEDNSHTPPPPVL-STSWEYWDPFGSTSPNCQQKSKIEEE-----------------QIEEENWAEANTEFEEEDQVDVVAVNNTVDITPVKKQTASVVDENSSVMSWHTKDTADLSMVIWRRKKTLSGIIRDIDDYFVKASAGGKDVAVFLDFNVADSPLYQSINENKRKRSNSAKVFNALTWSWSSKSLQSTRDAGDTCGPSDPCKPGAHCVTLAKLYDAERKLHREVKEEELTKLEHERKSLMLQKLEEEDHDWSKTDKARSVVESLQSDILSLQQSNSSTCSTILKLIDEELHPQLIVLISGLMCMWRRMYECHQVQNHIAQQLNHLVNQQNMEPTSEYDRQAAAQLKTEVNSWYNSLCKLVKSQREYVSALCRWVQLTNCLVDNGQGSVSSSAVCTLSKQWLVALDKLPDKRALEAINSLLSAVRSIVLQQEEEVNLYKRSDKLERRLERELNLLSEMEMKFEGSFTNEEMQTVLGPKHPFSVKRAKIEVLKKRVDDEKSKYINSIQNTRAMILNNLQTSLPNVFQALMAFSNSYTESFDMVLS 644
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U960 ((nitrate regulatory gene2 protein-like isoform X1 {ECO:0000313|RefSeq:XP_027086963.1, ECO:0000313|RefSeq:XP_027086964.1}))
HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 392/662 (59.21%), Postives = 510/662 (77.04%), Query Frame = 0
Match: A0A6P6U960 ((nitrate regulatory gene2 protein-like isoform X1 {ECO:0000313|RefSeq:XP_027086963.1, ECO:0000313|RefSeq:XP_027086964.1}))
HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 392/662 (59.21%), Postives = 510/662 (77.04%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGC S IDK+ERVRICKERKR++K+++ R +A++QLEYL AL+NTG TLRQFTES+SLE++D G PPSPPPPLPPSPPPPP+FSPD R +NNH + S+EE I+ DEDNS TPPPP L S+SWE+WDPFG+++ + ++KS+ ++ Q+EEENWAEANTEFEEE+ + + V++ K + D+NSSVMSWHTKDT+D++MV+ K+TL+ I+R++DD F+KAS+GGK++ V +D V DS L+Q ENKRKRSNS KVF+ALTWSWSS+SL TRD D PS+ CKPGAHC+TL KL D E KL++EVKEEE+ KLEHE+KSL LQK + ED DW+KT+K R+ VESLQS+I+ LQQS S TCSTIL LI+EELHPQL L SGLM MW++M++CHQVQ HI+QQ+NHL N Q ++PT++Y +QAAAQLK+EV SW +S CKL+K QREYV + RW++LT+CLV+N S SAV L + W +ALDKLP+K A EAI S LSA+ +IVLQQE+E++L +RSDKLE++L RELN ++EMEMKFEGSF E + L PKHP VKRAK+E LKK+VDDEK+KY++S++ TR M LNNL+TSLPNVF+ALM F+++Y+++F+++ S
Sbjct: 1 MGCVVSSIDKEERVRICKERKRILKRLLVLRKQYADSQLEYLRALRNTGVTLRQFTESESLEIEDGALGHALPPSPPPPLPPSPPPPPSFSPDLRNSHNNHHMKTSEEEIIDIDEDNSHTPPPPVL-STSWEYWDPFGSTSPNCQQKSKIEEE-----------------QIEEENWAEANTEFEEEDQVDVVAVNNTVDITPVKKQTASVVDENSSVMSWHTKDTADLSMVIWRRKKTLSGIIRDIDDYFVKASAGGKDVAVFLDFNVADSPLYQSINENKRKRSNSAKVFNALTWSWSSKSLQSTRDAGDTCGPSDPCKPGAHCVTLAKLYDAERKLHREVKEEELTKLEHERKSLMLQKLEEEDHDWSKTDKARSVVESLQSDILSLQQSNSSTCSTILKLIDEELHPQLIVLISGLMCMWRRMYECHQVQNHIAQQLNHLVNQQNMEPTSEYDRQAAAQLKTEVNSWYNSLCKLVKSQREYVSALCRWVQLTNCLVDNGQGSVSSSAVCTLSKQWLVALDKLPDKRALEAINSLLSAVRSIVLQQEEEVNLYKRSDKLERRLERELNLLSEMEMKFEGSFTNEEMQTVLGPKHPFSVKRAKIEVLKKRVDDEKSKYINSIQNTRAMILNNLQTSLPNVFQALMAFSNSYTESFDMVLS 644
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DBN4 ((Uncharacterized protein {ECO:0000313|EMBL:THF99971.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 419/668 (62.72%), Postives = 516/668 (77.25%), Query Frame = 0
Match: A0A4S4DBN4 ((Uncharacterized protein {ECO:0000313|EMBL:THF99971.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 419/668 (62.72%), Postives = 516/668 (77.25%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFG-ATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKL-------DASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVI 660
MGC ASRIDK+ERVRICK+RK LMKQ+V FRG FA+AQL YL +LKNTG TLRQFTES+SLEL++ FG PPSPPPPLPPSPPPPPTFSPD R + ++ + +QEE +E E+ SCTPPPPP+PSS+W+FWDPF S+ +EK E V+ +EEENWAEAN EFEEE EE + NLL EK E DD+SS++SWHTKDT+DMAMVV SK+TLA IV+ELDD FLKAS+G K+I +L+DI ++ WQ +K+NK +R +S KVF+ALTWSWSS+SL TR +F PSE C+PGAHCITL KL +E +LYK+VK++E+ KLEHEKKS LQKQQ ED DWTKTEKTR VESLQS+II L++SISR+CS+I LI EELHPQL ++ SGL MW+ +++CHQVQ HISQQV+HL+N Q V+PTT+YH+QAAAQLK+EV SW +SFCKLIK Q EYVR + RWI+LT+C E+S S SAVH LCE W L LD+LP+K A EAIK+FLS +H+IVLQQE+EL+L ++SDKLEK+L+REL+S++EMEMK EG+FNVE+ +S L+PKHPL VKRAKVEALKK+++DEKAKY SV+VTR M LNNL+TSLPNVF+ALMGF+SAY+Q E I
Sbjct: 1 MGCVASRIDKEERVRICKDRKMLMKQLVGFRGEFADAQLTYLRSLKNTGVTLRQFTESESLELENTSFGDLPLPPSPPPPLPPSPPPPPTFSPDSRMFEDKQRMFEDKQRVEIAQEEIVEVGEETSCTPPPPPVPSSTWDFWDPFSPSSLPCEEKRE------------------FVEPIEEENWAEANAEFEEEEQEENIVDKNAANLLPEKHETIELGDDSSSMVSWHTKDTADMAMVVCRSKKTLAGIVKELDDYFLKASAGVKDIVILVDINSSETFRWQNSKDNKERRGSSAKVFNALTWSWSSKSLQCTRSAAEFCGPSEPCRPGAHCITLEKLYAQEQRLYKDVKDKEITKLEHEKKSSLLQKQQDEDHDWTKTEKTRFIVESLQSDIIHLEESISRSCSSISELIVEELHPQLISIISGLTSMWRTIYECHQVQNHISQQVSHLTNQQSVEPTTNYHRQAAAQLKTEVNSWYNSFCKLIKAQGEYVRALCRWIQLTECFAEDSQQSGSSSAVHTLCEEWQLTLDRLPDKVASEAIKTFLSVVHSIVLQQEEELNLQKKSDKLEKRLQRELSSLSEMEMKLEGNFNVEDANSILNPKHPLSVKRAKVEALKKRMNDEKAKYHHSVQVTRAMILNNLRTSLPNVFQALMGFSSAYAQTLEAI 650
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G2X5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934018.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 418/668 (62.57%), Postives = 515/668 (77.10%), Query Frame = 0
Match: A0A7J7G2X5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934018.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 418/668 (62.57%), Postives = 515/668 (77.10%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFG-ATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKL-------DASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVI 660
MGC ASRIDK+ERVRICK+RK LMKQ+V FRG FA+AQL YL +LKNTG TLRQFTES+SLEL++ FG PPSPPPPLPPSPPPPPTFSPD R + ++ + +QEE +E E+ SCTPPPPP+PSS+W+FWDPF S+ +EK E V+ +EEENWAEAN EFEEE EE + NLL EK E DD+SS++SWHTKDT+DMAMVV SK+TLA IV+ELDD FLKAS+G K+I +L+DI ++ WQ +K+N+ +R +S KVF+ALTWSWSS+SL TR +F PSE C+PGAHCITL KL +E +LYK+VK++E+ KLEHEKKS LQKQQ ED DWTKTEKTR VESLQS+II L++SISR+CS+I LI EELHPQL ++ SGL MW+ +++CHQVQ HISQQV+HL+N Q V+PTT+YH+QAAAQLK+EV SW +SFCKLIK Q EYVR + RWI+LT+C E+S S SAVH LCE W L LD+LP+K A EAIK+FLS IH+IVLQQE+EL+L ++SDKLEK+L+RE +S++EMEMK EG+FNVE+ +S L+PKHPL VKRAKVEALKK+++DEKAKY SV+VTR M LNNL+TSLPNVF+ALMGF+SAY+Q E I
Sbjct: 1 MGCVASRIDKEERVRICKDRKMLMKQLVGFRGEFADAQLTYLRSLKNTGVTLRQFTESESLELENTSFGDLPLPPSPPPPLPPSPPPPPTFSPDSRMFEDKQRMFEDKQRVEIAQEEIVEVGEETSCTPPPPPVPSSTWDFWDPFSPSSLPCEEKRE------------------FVEPIEEENWAEANAEFEEEEQEENIVEKNAANLLPEKHETIELGDDSSSMVSWHTKDTADMAMVVCRSKKTLAGIVKELDDYFLKASAGVKDIVILVDINSSETFRWQNSKDNRERRGSSAKVFNALTWSWSSKSLQCTRSAAEFCGPSEPCRPGAHCITLEKLYAQEQRLYKDVKDKEITKLEHEKKSSLLQKQQDEDHDWTKTEKTRFIVESLQSDIIHLEESISRSCSSISELIVEELHPQLISIISGLTSMWRTIYECHQVQNHISQQVSHLTNQQSVEPTTNYHRQAAAQLKTEVNSWYNSFCKLIKAQGEYVRALCRWIQLTECFAEDSQQSGSSSAVHTLCEEWQLTLDRLPDKVASEAIKTFLSVIHSIVLQQEEELNLQKKSDKLEKRLQRESSSLSEMEMKLEGNFNVEDANSILNPKHPLSVKRAKVEALKKRMNDEKAKYHHSVQVTRAMILNNLRTSLPNVFQALMGFSSAYAQTLEAI 650
BLAST of DCAR_003870 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3C893 ((DUF632 domain-containing protein/DUF630 domain-containing protein {ECO:0000313|EMBL:GAV76404.1}))
HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 403/662 (60.88%), Postives = 495/662 (74.77%), Query Frame = 0
Match: A0A1Q3C893 ((DUF632 domain-containing protein/DUF630 domain-containing protein {ECO:0000313|EMBL:GAV76404.1}))
HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 403/662 (60.88%), Postives = 495/662 (74.77%), Query Frame = 0
Query: 1 MGCAASRIDKDERVRICKERKRLMKQVVRFRGVFAEAQLEYLTALKNTGATLRQFTESDSLELDDNPFGATSPPSPPPPLPPSPPPPPTFSPDPRKVNNNHKLDASQEESIEFDEDNSCTPPPPPLPSSSWEFWDPFGNSAAHYKEKSETVDQIEEECWAEAKENSDIVDQVEEENWAEANTEFEEENLEEEAGSTDLVNLLSEKPHRSEFFDDNSSVMSWHTKDTSDMAMVVSMSKRTLANIVRELDDCFLKASSGGKNIGVLMDITVVDSVLWQKNKENKRKRSNSVKVFSALTWSWSSRSLNHTRDIIDFSDPSEACKPGAHCITLRKLCDEEHKLYKEVKEEEMNKLEHEKKSLQLQKQQMEDQDWTKTEKTRASVESLQSEIIRLQQSISRTCSTILVLINEELHPQLSALTSGLMHMWKKMFDCHQVQTHISQQVNHLSNYQCVDPTTDYHKQAAAQLKSEVTSWCDSFCKLIKFQREYVRTMSRWIKLTDCLVENSDLSSGPSAVHALCENWHLALDKLPEKAAEEAIKSFLSAIHAIVLQQEDELSLLRRSDKLEKKLRRELNSMAEMEMKFEGSFNVENPHSGLSPKHPLVVKRAKVEALKKQVDDEKAKYLSSVEVTRVMTLNNLKTSLPNVFRALMGFASAYSQAFEVIHS 662
MGCAAS IDK+ERV++CKERKRLMKQ+V FRG FA+AQL YL ALKNTG TLRQFTES+SLEL++ +G SPPSPPPPLPPSPPPPP FSPD RK N+N + +QE S+E +ED + TPPP + SSSWE+WDPFG+S Y K E V+ VEEENWAE TEFEE++ EEEA + + E+ E DDNSS+MSW+TKDT+DM MVV K+TL IV++LDD FLKAS+GGKNI VL+DI+ DS L Q ENKRKRS+S KVFSAL+W+WSS+SL TRD +FS E CKPGAHCITL +L E KL+KEV+EEE+ KLE+E+KS+ L KQ+ E+ DW+KT+KTR VESL++ I L+ SISRT S++L LI+EEL+PQL ALTSGLMHMW+ M+ CHQVQ HISQQ+NH+S+ Q +D TT+Y QA AQL++EVT W FCKL+K QREYVRT+ RWI LTD LV+N S SA+ LCE W + D+LP+K A E+IKSFLSAI +I+ Q +E +L ++ DKLEK+L++EL S+AEME K EGSF ++ S LSP HPL +KRAK EALKK+V+ EKAKYL+SVEVTR MTL+NLKTSLPNVF+ALM F+SA QA E IH
Sbjct: 1 MGCAASSIDKEERVQVCKERKRLMKQLVGFRGEFADAQLAYLRALKNTGVTLRQFTESESLELENTTYGLASPPSPPPPLPPSPPPPPPFSPDLRKSNDNETKEITQE-SMEIEEDGNSTPPPR-VQSSSWEYWDPFGHSLPSYPRKGE------------------FVEPVEEENWAETRTEFEEDDREEEAVDNLAASTVPERLQPVELVDDNSSMMSWYTKDTADMGMVVWRKKKTLEGIVKDLDDYFLKASAGGKNIAVLLDISKGDSSLPQNFNENKRKRSSSAKVFSALSWNWSSKSLQFTRDAAEFSGSGEPCKPGAHCITLERLYAAELKLFKEVREEEITKLEYERKSMLLSKQEDENHDWSKTDKTRLIVESLETSISCLEHSISRTSSSMLQLIDEELYPQLVALTSGLMHMWQAMYACHQVQNHISQQLNHISDTQSMDLTTEYRHQATAQLETEVTCWYSYFCKLVKSQREYVRTLCRWIHLTDSLVDNHQQSHCLSAIRRLCEEWQIVFDRLPDKVASESIKSFLSAIQSIIQLQTEEHNLHKKYDKLEKRLQKELLSLAEMEKKLEGSFPADDAPSDLSPNHPLSLKRAKTEALKKRVETEKAKYLNSVEVTRTMTLSNLKTSLPNVFQALMVFSSASVQALEAIHG 642
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B8N2 | E-Value: 0.000e+0, PID: 67.87 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6534... [more] |
| A0A5J4ZP00 | E-Value: 0.000e+0, PID: 63.31 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8519... [more] |
| F6HLW6 | E-Value: 0.000e+0, PID: 64.65 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5584... [more] |
| A0A2R6QAK9 | E-Value: 0.000e+0, PID: 62.84 | (RB1-inducible coiled-coil protein like {ECO:00003... [more] |
| A0A6P6UEK4 | E-Value: 0.000e+0, PID: 59.52 | (nitrate regulatory gene2 protein-like {ECO:000031... [more] |
| A0A068VGF5 | E-Value: 0.000e+0, PID: 59.21 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1964... [more] |
| A0A6P6U960 | E-Value: 0.000e+0, PID: 59.21 | (nitrate regulatory gene2 protein-like isoform X1 ... [more] |
| A0A4S4DBN4 | E-Value: 0.000e+0, PID: 62.72 | (Uncharacterized protein {ECO:0000313|EMBL:THF9997... [more] |
| A0A7J7G2X5 | E-Value: 0.000e+0, PID: 62.57 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5934... [more] |
| A0A1Q3C893 | E-Value: 0.000e+0, PID: 60.88 | (DUF632 domain-containing protein/DUF630 domain-co... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |