DCAR_003879 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_003879

Identifier:

DCAR_003879.mRNA-protein

Sequence:

MNICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVS
HMLHLHIEKPKPKSLRTMINSHDKPILSPKEDISDKWRQIQGSSGWGDLL
DPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGL
HYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKES
RRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAK
NEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLN
AYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVP
RMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLG
YHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWY
QMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVFHHLESNYQGA*

Sequence Length:

498

Sequence Checksum:

dc80f70218cf44c273714251133eb77c

View location in JBrowse:

DCARv2_Chr1:42799770..42801263+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_003879, derives from mRNA, DCAR_003879.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DB74 (Lipase_3 domain-containing protein {ECO:0000259|Pfam:PF01764})

HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0
Identity = 340/471 (72.19%), Postives = 398/471 (84.50%), Query Frame = 0

Query:   23 SRVRAFQEATQEAQ---KPSKMTTRLAESVSHMLHLHIEKPKPKSLRTMI--------NSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKR-GFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSE 481
            S++ A  + T + Q   K S  + RLAES+S++ HLHIE P  K +   I          H+ P +SPKEDISDKWR+ QG S W +LL+PLHP LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++R+ + +KLGL  H Y VSKYIYAMSH+DVP+WL++S +  +WS+DSNWMG+VAVSDD+E+RRIGRRDIVVAWRGTVAP+EWYEDLQRKLEPIG GEAKVE+GFL IY +K++ TRYNKSSASEQV+ E+KRLVK +K RGE VS+T+TGHSLGGALA+LNAYE AT +PN+PI+V+SFGAPRVGNIAFRDE++Q GVKTLR+VVKQD VPRMPGI+ NESLQ FDD TGTL+WVY HVGAELKLD R+SPYLKR GFNVLG+H LETYLHLVDGF+ST S+FR+ ARRDVALVNKACDM+V+ELRIP  WYQM NKGLVCNDHGRWVKP RDPED+PSPT E
Sbjct:   26 SKIHAHHQLTIDTQPNPKTSNRSIRLAESLSNLFHLHIEPPTQKHVHNSIWNVHFDHEERHNTPAMSPKEDISDKWREKQGLSDWDNLLNPLHPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNRDKIFDKLGLTKHGYKVSKYIYAMSHMDVPRWLERSVLGQTWSKDSNWMGFVAVSDDEETRRIGRRDIVVAWRGTVAPSEWYEDLQRKLEPIGEGEAKVEYGFLGIYTSKSDTTRYNKSSASEQVMKEVKRLVKFHKTRGERVSLTITGHSLGGALALLNAYEAATSIPNLPISVISFGAPRVGNIAFRDEIYQMGVKTLRVVVKQDLVPRMPGIIFNESLQMFDDFTGTLDWVYTHVGAELKLDARSSPYLKRGGFNVLGFHMLETYLHLVDGFMSTSSTFRSNARRDVALVNKACDMIVDELRIPPCWYQMENKGLVCNDHGRWVKPRRDPEDIPSPTRE 496

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1B543 ((phospholipase A1-Igamma1, chloroplastic-like {ECO:0000313|RefSeq:XP_021294296.1}))

HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 333/470 (70.85%), Postives = 396/470 (84.26%), Query Frame = 0

Query:   23 SRVRAFQEATQEAQKPSKMTT----RLAESVSHMLHLHIEKPKPKSLR------TMINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEG 482
            S +RA QE      K +  ++    RLAES+S++LHLHIE P  K+L+           H+ P  SPKE I+DKWR I GS  W ++LDPLHP LRREI+KYGEFAQATYDAFDFDSFSE+CGSCR++RN L +KLGL  + Y V KYIYAMSH+++PQWL++SH+MD+WS+DSNWMGYVAVSD++ESRRIGRRDIVVAWRGTVAP+EWYED QR LEPIG G+AKVEHGFLSIY + +E TRYNKSSAS+QV+ E+ +LV+ Y+  GEEVS+T+TGHSLGGALA+LNAYE A  +P++P++V+SFGAPRVGN AFRDEL   GVKTLR+VVKQD VPRMPGIV NESLQ+FDDITGTLEWVY HVGAEL+LDV +SPYLKRGFN LG+HSLETYLHLVDGF S +S+FR+EARRDV+LVNKACD+LV+ELRIPHFWYQ++NKGLVCN+HGRWVKP RDPED+PSPT E 
Sbjct:   23 SAIRAHQEVVFHHPKVNTASSGGARRLAESISNLLHLHIETPSRKNLQHSNWDLFYEEKHNTPTTSPKEVIADKWRDIHGSVDWENVLDPLHPWLRREIVKYGEFAQATYDAFDFDSFSEFCGSCRYNRNKLFDKLGLGKNGYKVIKYIYAMSHIEMPQWLERSHLMDTWSKDSNWMGYVAVSDNEESRRIGRRDIVVAWRGTVAPSEWYEDFQRNLEPIGIGDAKVEHGFLSIYTSMSESTRYNKSSASKQVMEEVTKLVQFYQGNGEEVSLTITGHSLGGALALLNAYEAAASLPDLPVSVISFGAPRVGNSAFRDELDGLGVKTLRVVVKQDLVPRMPGIVFNESLQRFDDITGTLEWVYTHVGAELRLDVSSSPYLKRGFNPLGFHSLETYLHLVDGFHSADSTFRSEARRDVSLVNKACDLLVDELRIPHFWYQLSNKGLVCNEHGRWVKPRRDPEDIPSPTGEA 492

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HLV0 (Lipase_3 domain-containing protein {ECO:0000259|Pfam:PF01764})

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 333/492 (67.68%), Postives = 403/492 (81.91%), Query Frame = 0

Query:    2 NICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVSHMLHLHIEKPKPKSLRT------MINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVF 487
            +  HH+ P+++  +T        +R FQE     ++ S  ++RL++S S++L LH++ P     ++      +   H  P  SPKEDIS+KW +I GS  W +LLDPL P LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++++ L  +LGL  + Y VSKYIYAMSH+DVPQWL++SH++D+WS+DSNWMGYVAVSDD+ESRRIGRRDIVV+WRGTVAP+EWYED QRKLEP+G+GEAKVEHGFLSIY +K E +RYNKSSAS+QV+ E+ RLV+LYK+RGE+VS+T+TGHSLGGALA+LNAYE AT +P +PI+V+SFGAPRVGNIAFRDELHQ GVKTLR+VVKQD VPRMPG+V NE LQKFDDITGTL+WVY HVGAELKLDV++SPYLKRGFN+ G+HSLETYLHL+DGF S  S+FR  ARRD+ALVNKACDMLV+ELRIPH WYQ ANKGLV N HGRWVK  RDPED+PSP  E  +  F
Sbjct:    7 SCIHHHLPVAHHRRTNQTFI---IRGFQEVATLPKQQSA-SSRLSQSFSNLLRLHVDTPPRTDFQSSTGISLIDEKHSTPTCSPKEDISNKWSEIHGSCDWDNLLDPLQPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNQHKLFKELGLEKNGYMVSKYIYAMSHIDVPQWLERSHLLDTWSKDSNWMGYVAVSDDQESRRIGRRDIVVSWRGTVAPSEWYEDFQRKLEPVGSGEAKVEHGFLSIYTSKRESSRYNKSSASDQVMKEVTRLVQLYKQRGEQVSLTITGHSLGGALALLNAYEAATSLPGLPISVISFGAPRVGNIAFRDELHQLGVKTLRVVVKQDMVPRMPGLVFNERLQKFDDITGTLKWVYTHVGAELKLDVQSSPYLKRGFNLPGFHSLETYLHLIDGFHSKTSTFREGARRDIALVNKACDMLVDELRIPHAWYQFANKGLVRNAHGRWVKQVRDPEDIPSPARETHHQAF 494

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IW90 ((Phospholipase A1-Igamma1, chloroplastic {ECO:0000313|EMBL:RVX00735.1}))

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 333/492 (67.68%), Postives = 403/492 (81.91%), Query Frame = 0

Query:    2 NICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVSHMLHLHIEKPKPKSLRT------MINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVF 487
            +  HH+ P+++  +T        +R FQE     ++ S  ++RL++S S++L LH++ P     ++      +   H  P  SPKEDIS+KW +I GS  W +LLDPL P LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++++ L  +LGL  + Y VSKYIYAMSH+DVPQWL++SH++D+WS+DSNWMGYVAVSDD+ESRRIGRRDIVV+WRGTVAP+EWYED QRKLEP+G+GEAKVEHGFLSIY +K E +RYNKSSAS+QV+ E+ RLV+LYK+RGE+VS+T+TGHSLGGALA+LNAYE AT +P +PI+V+SFGAPRVGNIAFRDELHQ GVKTLR+VVKQD VPRMPG+V NE LQKFDDITGTL+WVY HVGAELKLDV++SPYLKRGFN+ G+HSLETYLHL+DGF S  S+FR  ARRD+ALVNKACDMLV+ELRIPH WYQ ANKGLV N HGRWVK  RDPED+PSP  E  +  F
Sbjct:    7 SCIHHHLPVAHHRRTNQTFI---IRGFQEVATLPKQQSA-SSRLSQSFSNLLRLHVDTPPRTDFQSSTGISLIDEKHSTPTCSPKEDISNKWSEIHGSCDWDNLLDPLQPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNQHKLFKELGLEKNGYMVSKYIYAMSHIDVPQWLERSHLLDTWSKDSNWMGYVAVSDDQESRRIGRRDIVVSWRGTVAPSEWYEDFQRKLEPVGSGEAKVEHGFLSIYTSKRESSRYNKSSASDQVMKEVTRLVQLYKQRGEQVSLTITGHSLGGALALLNAYEAATSLPGLPISVISFGAPRVGNIAFRDELHQLGVKTLRVVVKQDMVPRMPGLVFNERLQKFDDITGTLKWVYTHVGAELKLDVQSSPYLKRGFNLPGFHSLETYLHLIDGFHSKTSTFREGARRDIALVNKACDMLVDELRIPHAWYQFANKGLVRNAHGRWVKQVRDPEDIPSPARETHHQAF 494

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3H616 ((Lipase, class 3 {ECO:0000313|EMBL:OMO65808.1}))

HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 332/495 (67.07%), Postives = 406/495 (82.02%), Query Frame = 0

Query:    1 MNICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMT---TRLAESVSHMLHLHIEKPK----------PKSLRTMINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEG 482
            M+   HN   S     ANR P   + A Q+   +    +KM+    RL ES+SH+LHLHIE P           P     +   H+ P +SPKE ISDKWR++ GS  W +LLDPLHP LRREI+KYGEFAQATYD+FDFDSFSEYCGSCR+++N L  KLGL  + Y V+K+IYAMSHV +PQWL++S++M++WS+DSNWMGYVAVSD++E+RRIGRRDIVVAWRGTVAP+EWYED QRKLEPIG G++KVEHGFLSIY +K+E TRYNKSSASEQV+ E+++LVK Y+ RGE+VS+T+TGHSLGGALA+LNAYE A + P +P++V+SFGAPRVGN AFR+EL + GVKTLR+V+KQDFVPRMPGIV NESL++FD+ITGTLEW+Y HVG EL+LDV +SPYLKRGFN LG+HSLETYLHL+DGF+ST S+FR ++RRD+ALVNKACDMLV+ELRIPHFWYQ+ANKGLVCN+HGRWVKP+RDPED+PSP  E 
Sbjct:    3 MSTMIHNHLPSTLNAGANRVPV--ICAHQQFVHDHHPKAKMSNPGARLVESLSHLLHLHIEPPSRKNNVPHDQFPNWDLFIEEKHNTPTISPKEVISDKWRELHGSMDWDNLLDPLHPWLRREIVKYGEFAQATYDSFDFDSFSEYCGSCRYNKNKLFEKLGLDKNGYKVTKFIYAMSHVQMPQWLQRSNLMETWSKDSNWMGYVAVSDNEETRRIGRRDIVVAWRGTVAPSEWYEDFQRKLEPIGMGDSKVEHGFLSIYASKSESTRYNKSSASEQVMKEVRKLVKFYEGRGEQVSLTITGHSLGGALALLNAYEAAAIFPGLPVSVISFGAPRVGNSAFREELDELGVKTLRVVIKQDFVPRMPGIVFNESLEQFDEITGTLEWIYTHVGTELRLDVSSSPYLKRGFNPLGFHSLETYLHLIDGFLSTNSAFRPDSRRDIALVNKACDMLVDELRIPHFWYQLANKGLVCNEHGRWVKPKRDPEDIPSPIGEA 495

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EFT7 (Lipase_3 domain-containing protein {ECO:0000259|Pfam:PF01764})

HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 341/490 (69.59%), Postives = 401/490 (81.84%), Query Frame = 0

Query:    5 HHNFPLSN-DYQTANRGPRSRVRAFQEATQEAQKPSKMTTR---LAESVSHMLHLHIEKPKPKSLRTMI--------NSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKR-GFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSE 481
            HH  P +     T ++ P+  + A  + T + Q   K + R   LAES+S++ HLHIE P  K +   I          H+ P +SPKEDISDKWR+ QG   W +LL+PLHP LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++ + + +KLGL  H Y VSKYIYAMSH+DVP+WL++S +  +WS+DSNWMG+VAVSDD+E+RRIGRRDIVVAWRGTVAP+EWYEDLQRKLEPIG GEAKVE+GFLSIY +K++ TRYNKSSAS QV+ E+KRLVK +K RGE+VS+T+TGHSLGGALA+LNAYE A  +PN+PI+V+SFGAPRVGNIAFRDE++Q GVKTLR+VVKQD VPRMPGIV NESLQ  DD TGTL+WVY HVGAELKLD R+SPYLKR GFNVLG+H LETYLHLVDGF+ST S+FR+ ARRDVALVNKACDM+V+ELRIP  WYQM NKGLVCNDHGRWVKP RDPEDVPSPT E
Sbjct:    9 HHRIPTAQRPSTTTDQLPK--IHAHHQLTIDTQPNPKTSNRSIHLAESLSNLFHLHIEPPTQKHVHNSIWNVHFDHEERHNTPAMSPKEDISDKWREKQGFCDWDNLLNPLHPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNHDKIFDKLGLTKHGYKVSKYIYAMSHMDVPRWLERSVLGQTWSKDSNWMGFVAVSDDEETRRIGRRDIVVAWRGTVAPSEWYEDLQRKLEPIGEGEAKVEYGFLSIYTSKSDATRYNKSSASVQVMKEVKRLVKFHKTRGEQVSLTITGHSLGGALALLNAYEAAASIPNLPISVISFGAPRVGNIAFRDEIYQMGVKTLRVVVKQDLVPRMPGIVFNESLQMLDDFTGTLDWVYTHVGAELKLDARSSPYLKRGGFNVLGFHMLETYLHLVDGFMSTSSTFRSNARRDVALVNKACDMIVDELRIPPCWYQMENKGLVCNDHGRWVKPRRDPEDVPSPTRE 496

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HLV1 (Lipase_3 domain-containing protein {ECO:0000259|Pfam:PF01764})

HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 332/492 (67.48%), Postives = 403/492 (81.91%), Query Frame = 0

Query:    2 NICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVSHMLHLHIEKPKPKSLRT------MINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVF 487
            +  HH+ P+ +  +T        +R FQE     ++ S  ++RL++S+S++L LH++ P     ++      +   H  P  SPKEDIS+KW +I GS  W +LLDPL P LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++++ L  +LGL  + Y VSKYIYAMSH+DVPQWL++SH++D+WS+DSNWMGYVAVSDD+ES RIGRRDIVVAWRGTVAP+EWYED QRKLEP+G+GEAKVEHGFLSIY +K E +RYNKSSAS+QV+ E+ RLV+LYK+RGE+VS+T+TGHSLGGALA+LNAYE AT +P +PI+V+SFG+PRVGNIAFRDELHQ GVKTLR+VVKQD VPRMPG+V NESLQKFDDITGTL+WVY HVGAELKLDV++SPYLKRGFN+ G+HSLETYLHL+DGF S  S+FR +ARRD+ALVNKACDMLV+ELRIP  WYQ ANKGLV N HGRWVK  RDPED+PSP  E  +  F
Sbjct:    7 SCIHHHLPVVHHRRTNQTFI---IRGFQEVATLPKQQSA-SSRLSQSLSNLLRLHVDTPPRTDFQSSTGISLIDEKHSTPTCSPKEDISNKWSEIHGSCDWDNLLDPLQPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNQHKLFKELGLEKNGYMVSKYIYAMSHIDVPQWLERSHLLDTWSKDSNWMGYVAVSDDQESSRIGRRDIVVAWRGTVAPSEWYEDFQRKLEPVGSGEAKVEHGFLSIYTSKRESSRYNKSSASDQVMKEVTRLVQLYKQRGEQVSLTITGHSLGGALALLNAYEAATSLPGLPISVISFGSPRVGNIAFRDELHQLGVKTLRVVVKQDIVPRMPGLVFNESLQKFDDITGTLKWVYTHVGAELKLDVQSSPYLKRGFNLPGFHSLETYLHLIDGFHSKTSTFREDARRDIALVNKACDMLVDELRIPRAWYQFANKGLVRNAHGRWVKQVRDPEDIPSPARETHHQAF 494

[Close]

BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IVS3 ((Phospholipase A1-Igamma1, chloroplastic {ECO:0000313|EMBL:RVX00736.1}))

HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 332/492 (67.48%), Postives = 403/492 (81.91%), Query Frame = 0

Query:    2 NICHHNFPLSNDYQTANRGPRSRVRAFQEATQEAQKPSKMTTRLAESVSHMLHLHIEKPKPKSLRT------MINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVF 487
            +  HH+ P+ +  +T        +R FQE     ++ S  ++RL++S+S++L LH++ P     ++      +   H  P  SPKEDIS+KW +I GS  W +LLDPL P LRREI+KYGEFAQATYDAFDFDSFSEYCGSCR++++ L  +LGL  + Y VSKYIYAMSH+DVPQWL++SH++D+WS+DSNWMGYVAVSDD+ES RIGRRDIVVAWRGTVAP+EWYED QRKLEP+G+GEAKVEHGFLSIY +K E +RYNKSSAS+QV+ E+ RLV+LYK+RGE+VS+T+TGHSLGGALA+LNAYE AT +P +PI+V+SFG+PRVGNIAFRDELHQ GVKTLR+VVKQD VPRMPG+V NESLQKFDDITGTL+WVY HVGAELKLDV++SPYLKRGFN+ G+HSLETYLHL+DGF S  S+FR +ARRD+ALVNKACDMLV+ELRIP  WYQ ANKGLV N HGRWVK  RDPED+PSP  E  +  F
Sbjct:    7 SCIHHHLPVVHHRRTNQTFI---IRGFQEVATLPKQQSA-SSRLSQSLSNLLRLHVDTPPRTDFQSSTGISLIDEKHSTPTCSPKEDISNKWSEIHGSCDWDNLLDPLQPWLRREIVKYGEFAQATYDAFDFDSFSEYCGSCRYNQHKLFKELGLEKNGYMVSKYIYAMSHIDVPQWLERSHLLDTWSKDSNWMGYVAVSDDQESSRIGRRDIVVAWRGTVAPSEWYEDFQRKLEPVGSGEAKVEHGFLSIYTSKRESSRYNKSSASDQVMKEVTRLVQLYKQRGEQVSLTITGHSLGGALALLNAYEAATSLPGLPISVISFGSPRVGNIAFRDELHQLGVKTLRVVVKQDIVPRMPGLVFNESLQKFDDITGTLKWVYTHVGAELKLDVQSSPYLKRGFNLPGFHSLETYLHLIDGFHSKTSTFREDARRDIALVNKACDMLVDELRIPRAWYQFANKGLVRNAHGRWVKQVRDPEDIPSPARETHHQAF 494

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BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQS2 (Lipase_3 domain-containing protein {ECO:0000259|Pfam:PF01764})

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 331/448 (73.88%), Postives = 384/448 (85.71%), Query Frame = 0

Query:   24 RVRAFQEATQEAQKP--SKMTTRLAESVSHMLHLHIEKPKPKSLR------TMINSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHG 463
            R+ A QE + +   P  S   TRLAES+S +LHLH+E P  ++L        + + H+ P +SPKEDISDKWR+IQGS  W +LLDPLHP LR+EI+KYGEFAQATYDAFDFDSFSEYCGSCR++R+ L ++LGL  H Y VSKYIYAMSH+D+P+W   SH++D WS+DSNWMGYVAVS+D+ES RIGRR+IVVAWRGTV P+EWYEDLQRKL+PIG GEAKVEHGFLSIY +K + TRYNKSSASEQV+ E+KRLV+ YKERGEEVS+T+TGHSLGGALA+LNAYE A   P + I V+SFGAPRVGNIAFRDELHQ GVKTLR+VVKQD VPRMPG+VLNESLQKFDDITGTLEWVY HVGAELKLDV +SPYLKRGFN+LG+HSLETYLHLVDGFVST S+FRT ARRDV+LVNKACDML++ELRIPH WYQ+ANKGLVCN+HG
Sbjct:   30 RICASQEISIDTSHPKSSNPATRLAESLSSILHLHLETPTQRNLHHTNWNLVLEDKHNTPCMSPKEDISDKWREIQGSYDWDNLLDPLHPWLRQEIVKYGEFAQATYDAFDFDSFSEYCGSCRYNRHKLFDQLGLSKHGYKVSKYIYAMSHIDMPRWFATSHLVDKWSKDSNWMGYVAVSNDEESCRIGRREIVVAWRGTVVPSEWYEDLQRKLDPIGHGEAKVEHGFLSIYTSKCDSTRYNKSSASEQVMKEVKRLVEFYKERGEEVSLTITGHSLGGALALLNAYEAAASFPGLHINVISFGAPRVGNIAFRDELHQMGVKTLRVVVKQDVVPRMPGLVLNESLQKFDDITGTLEWVYTHVGAELKLDVHSSPYLKRGFNLLGFHSLETYLHLVDGFVSTASTFRTNARRDVSLVNKACDMLIDELRIPHCWYQLANKGLVCNNHG 477

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BLAST of DCAR_003879 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834FYK2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7119954.1}))

HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 332/490 (67.76%), Postives = 401/490 (81.84%), Query Frame = 0

Query:   21 PRSRVRAFQEATQEAQKPS----KM--TTRLAESVSHMLHLHIEKPKPKSLRTMI--------NSHDKPILSPKEDISDKWRQIQGSSGWGDLLDPLHPCLRREILKYGEFAQATYDAFDFDSFSEYCGSCRFSRNNLLNKLGLHYHNYNVSKYIYAMSHVDVPQWLKKSHVMDSWSRDSNWMGYVAVSDDKESRRIGRRDIVVAWRGTVAPTEWYEDLQRKLEPIGAGEAKVEHGFLSIYKAKNEYTRYNKSSASEQVITELKRLVKLYKERGEEVSITVTGHSLGGALAVLNAYETATLVPNVPITVVSFGAPRVGNIAFRDELHQKGVKTLRIVVKQDFVPRMPGIVLNESLQKFDDITGTLEWVYAHVGAELKLDVRASPYLKRGFNVLGYHSLETYLHLVDGFVSTESSFRTEARRDVALVNKACDMLVEELRIPHFWYQMANKGLVCNDHGRWVKPERDPEDVPSPTSEGQYNVFHHLESNYQG 496
            P  ++RA Q+   +   P+    KM   TRLAES++ +LHLH E    K+++           + H+ P +SPKE+ISDKWR+I+G   W +LLDPLHP LRREI+KYGEFAQATYDAFDFDSFSE+CGSCR+SRN L  KLGL  H Y VS YIYAMSHVDVPQWL++S +  +WS+DSNWMG+VAVSD++ESRR+GRRDIVVAWRGTVAP+EWYED+QRKLEPIG GEAKVEHGFLS+Y  K++ TRYNKSSASEQV+ E+K+LV++Y+ RGEEVS+T+TGHSLGGALA+LNAYE A  +P +PI+VVSFGAPRVGNIAFRDE++Q GVKTLR+V+KQD VPRMPGIV NESLQ FDD TGTLEWVY HVGAELKLD ++SPYLKR  ++LG+H LETYLHLVDGFVS+ S+FR+ ARRD ALVNK+CDMLV+ELRIPH WYQ+ NKGLV N HGRWVKP+RDPED+PSPT E  +     +  +++G
Sbjct:   22 PFPKIRARQQLAVDPGHPNPDPQKMNRATRLAESLTSLLHLHTETHAQKTVQPSNWNLHFDEEDRHNTPAMSPKENISDKWREIRGCCDWHNLLDPLHPWLRREIVKYGEFAQATYDAFDFDSFSEFCGSCRYSRNRLFEKLGLTKHGYTVSNYIYAMSHVDVPQWLERSRLGKTWSKDSNWMGFVAVSDEEESRRLGRRDIVVAWRGTVAPSEWYEDMQRKLEPIGHGEAKVEHGFLSLYTTKSDATRYNKSSASEQVMEEVKKLVEMYRGRGEEVSLTITGHSLGGALALLNAYEAAASIPGLPISVVSFGAPRVGNIAFRDEIYQMGVKTLRVVLKQDVVPRMPGIVFNESLQMFDDFTGTLEWVYTHVGAELKLDAQSSPYLKRKIDLLGFHMLETYLHLVDGFVSSTSTFRSNARRDFALVNKSCDMLVDELRIPHCWYQIENKGLVRNAHGRWVKPKRDPEDIPSPTMEEAHTFVKEVRESHEG 511


Match Name	Stats	Description
A0A4S4DB74	E-Value: 0.000e+0, PID: 72.19	Lipase_3 domain-containing protein {ECO:0000259\|Pf... [more]
A0A6J1B543	E-Value: 0.000e+0, PID: 70.85	(phospholipase A1-Igamma1, chloroplastic-like {ECO... [more]
F6HLV0	E-Value: 0.000e+0, PID: 67.68	Lipase_3 domain-containing protein {ECO:0000259\|Pf... [more]
A0A438IW90	E-Value: 0.000e+0, PID: 67.68	(Phospholipase A1-Igamma1, chloroplastic {ECO:0000... [more]
A0A1R3H616	E-Value: 0.000e+0, PID: 67.07	(Lipase, class 3 {ECO:0000313\|EMBL:OMO65808.1})[more]
A0A4S4EFT7	E-Value: 0.000e+0, PID: 69.59	Lipase_3 domain-containing protein {ECO:0000259\|Pf... [more]
F6HLV1	E-Value: 0.000e+0, PID: 67.48	Lipase_3 domain-containing protein {ECO:0000259\|Pf... [more]
A0A438IVS3	E-Value: 0.000e+0, PID: 67.48	(Phospholipase A1-Igamma1, chloroplastic {ECO:0000... [more]
A0A5J4ZQS2	E-Value: 0.000e+0, PID: 73.88	Lipase_3 domain-containing protein {ECO:0000259\|Pf... [more]
A0A834FYK2	E-Value: 0.000e+0, PID: 67.76	(Uncharacterized protein {ECO:0000313\|EMBL:KAF7119... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.