Resource Type:
Polypeptide
Name:
DCAR_003030
Identifier:
DCAR_003030.mRNA-protein
Sequence:
MATGEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELV
QASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEP
LKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMC
KFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADS
KAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEE
DNSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGI
ASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEK
NDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSE
ALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTR
NKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF*
Sequence Length:
499
Sequence Checksum:
c935d8abc8ec477050c205f28e02f783
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003030, derives from mRNA, DCAR_003030. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KTN5 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018053:mrna}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 348/496 (70.16%), Postives = 404/496 (81.45%), Query Frame = 0
Match: A0A7N2KTN5 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018053:mrna}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 348/496 (70.16%), Postives = 404/496 (81.45%), Query Frame = 0
Query: 4 GEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEED-NSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
G EEERVLE QLEIQL E RDSL+AI AL SDP+N ELL V EELVQ KDAE+GLFHLKRARLLRE D L G EDV VE LD D++ EPL++ Y +GSKCRFRH+DGRWYNG ++ L++SD AK+SFLTP SENMLMCKFF QQRCRFG++CRLSHG+DVP+ SLK Y PT WDQS+ GSSIWA++DSK+GIWR+AELE WDDKL + +V+F DDGS KLG ++I+LS AQ+SDEE+ +S SE D SDY++++S+GLGF E+ST QRGIQ ET +FAKWENHTRGIASKMMA+MGY EGMGLG +GQG++DP++V+VLP KQSLDHALES E E N EKKRSRGGKRKR+KKFAA ARAAKE EE PDVFSLIN QLA H EAL+ GRS QQ K S +GN DRRALVAY DEVK+LRMR EKLEEMV RN+KEKVVYEAAMRKL+ETRKAL EA HASAS+A+ S E+EK+WLKF
Sbjct: 2 GSEEERVLENQLEIQLQEQRDSLAAIKEALASDPANPELLTVYEELVQVIKDAEEGLFHLKRARLLREADSVLNGCYHKPEDVKVEPLDPADVEPEPLEEQGYVVGSKCRFRHSDGRWYNGQIVELDDSDSAKISFLTPISENMLMCKFFLQQRCRFGTNCRLSHGVDVPLSSLKKYIPTTWDQSLVGSSIWAISDSKSGIWREAELESWDDKLGVGQVVFRDDGSCAKLGVDAITLSENAQVSDEEESDSGSEQFDSSDYEDEDSQGLGFLESSTQQRGIQKETMIFAKWENHTRGIASKMMANMGYREGMGLGVSGQGMLDPVTVKVLPPKQSLDHALESHEGEETNKKQEKKRSRGGKRKREKKFAALARAAKEEEELEPDVFSLINNQLAMHHEALS-GRSAKKQQGKGSGEGNKVDRRALVAYDDEVKDLRMRAEKLEEMVNRNRKEKVVYEAAMRKLNETRKALAEAEATHASASSAVVSREKEKRWLKF 496
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TSS4 ((zinc finger CCCH domain-containing protein 18-like isoform X1 {ECO:0000313|RefSeq:XP_027081499.1}))
HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 341/477 (71.49%), Postives = 396/477 (83.02%), Query Frame = 0
Match: A0A6P6TSS4 ((zinc finger CCCH domain-containing protein 18-like isoform X1 {ECO:0000313|RefSeq:XP_027081499.1}))
HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 341/477 (71.49%), Postives = 396/477 (83.02%), Query Frame = 0
Query: 23 RDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNS-SSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
R SL+ ++ AL DPSN+ELLAVQ ELVQA D E+GL HLKRARLLRE D LQG K +EDV VESLD D++ EP+ D SYS+GSKCRFRHTDGRWYNG+++GLE S+ AK+SFLTPTSE+MLMCKFF QQRCRFGSSCRLSHG+DVPI SLK Y PT+W+QS+AGSSIWA+ D++ GIWR+AELE WD+KL+L V+F DDG+S KLG ++SLS +A++SDEED+ SE +D SD EDNS GLGF E +T Q+GIQTETA+FAKWENHTRGIASKMMASMGY +GMGLGA+GQGIVDPI V+VLP KQSLDHA+E++EN + +N KKRSRGGKRKR+KKFAAA RAAKE EE PDVFSLINTQLAKH E LNGG S QQN ++ G NEDR LVAY DEVKELRMR+EKLEEMV RNKKEKVVYEAAMRKL ETRK L EAAHASAS+A+ S+E+EK+WLKF
Sbjct: 22 RGSLNTLNDALALDPSNAELLAVQAELVQAIADVEEGLLHLKRARLLREADFVLQGPKGHVEDVKVESLDPNDVEVEPVVDQSYSVGSKCRFRHTDGRWYNGLILGLEGSNSAKISFLTPTSESMLMCKFFLQQRCRFGSSCRLSHGVDVPISSLKQYIPTVWEQSLAGSSIWALQDARFGIWREAELESWDEKLNLGHVVFRDDGNSAKLGVGALSLSEFAEVSDEEDSDLGSEETDSSDSGEDNSRGLGFLETTTSQKGIQTETAIFAKWENHTRGIASKMMASMGYRDGMGLGASGQGIVDPIPVKVLPPKQSLDHAVENQENKKDKENQGKKRSRGGKRKREKKFAAACRAAKEQEESEPDVFSLINTQLAKHGETLNGG-STKKQQNMANGAGRNEDRSLLVAYEDEVKELRMRVEKLEEMVIRNKKEKVVYEAAMRKLTETRKLLAEAEAAHASASSAVISKEKEKRWLKF 497
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U203 ((zinc finger CCCH domain-containing protein 18-like isoform X1 {ECO:0000313|RefSeq:XP_027084695.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 338/477 (70.86%), Postives = 393/477 (82.39%), Query Frame = 0
Match: A0A6P6U203 ((zinc finger CCCH domain-containing protein 18-like isoform X1 {ECO:0000313|RefSeq:XP_027084695.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 338/477 (70.86%), Postives = 393/477 (82.39%), Query Frame = 0
Query: 23 RDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNS-SSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
R SL+ ++ AL D SN+ELLAVQ ELVQA D E+GL HLKRARLLRE D LQG K +E+V VESLD D++ EP+ D SYS+GSKCRFRHTDGRWYNG+++GLE S+ AK+SFLTPTSE+MLMCKFF QQRCRFGSSCRLSHG+DVPI SLK Y PT+W+QS+AGSSIWA+ D+K GIWR+AELE WD+ L+L V+F DDGSS KLG ++SLS +A++SDEED+ SE +D SD EDNS GLGF E +T Q+GIQTETA+FAKWENHTRGIASKMMASMGY +GMGLGA+GQGIVDPI V+VLP KQSLDHA+E++EN + +N KKRSRGGKRKR+KKFAAA RAAKE EE PDVFSLINTQLAKH E LNGG S QQN ++ G +DR LVAY DEVKELRMR+EKLEEMV RNKKEKVVYEAAMRKL ETRK L EAAHASAS+A+ S+E+EK+WLKF
Sbjct: 22 RGSLNTLNDALALDTSNAELLAVQAELVQAISDVEEGLLHLKRARLLREADFVLQGPKGHVEEVKVESLDPNDVEVEPVVDQSYSVGSKCRFRHTDGRWYNGLILGLEGSNSAKISFLTPTSESMLMCKFFLQQRCRFGSSCRLSHGVDVPISSLKQYIPTVWEQSLAGSSIWALQDAKFGIWREAELESWDEMLNLGHVVFRDDGSSAKLGVGALSLSEFAEVSDEEDSDLGSEETDSSDSGEDNSRGLGFLETTTSQKGIQTETAIFAKWENHTRGIASKMMASMGYRDGMGLGASGQGIVDPIPVKVLPPKQSLDHAVENQENEKDKENQGKKRSRGGKRKREKKFAAACRAAKEQEESEPDVFSLINTQLAKHGETLNGG-STKKQQNMANDAGRKDDRSRLVAYEDEVKELRMRVEKLEEMVIRNKKEKVVYEAAMRKLTETRKLLAEAEAAHASASSAVISKEKEKRWLKF 497
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VCQ1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18610.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 338/477 (70.86%), Postives = 393/477 (82.39%), Query Frame = 0
Match: A0A068VCQ1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18610.1}))
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 338/477 (70.86%), Postives = 393/477 (82.39%), Query Frame = 0
Query: 23 RDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNS-SSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
R SL+ ++ AL D SN+ELLAVQ ELVQA D E+GL HLKRARLLRE D LQG K +E+V VESLD D++ EP+ D SYS+GSKCRFRHTDGRWYNG+++GLE S+ AK+SFLTPTSE+MLMCKFF QQRCRFGSSCRLSHG+DVPI SLK Y PT+W+QS+AGSSIWA+ D+K GIWR+AELE WD+ L+L V+F DDGSS KLG ++SLS +A++SDEED+ SE +D SD EDNS GLGF E +T Q+GIQTETA+FAKWENHTRGIASKMMASMGY +GMGLGA+GQGIVDPI V+VLP KQSLDHA+E++EN + +N KKRSRGGKRKR+KKFAAA RAAKE EE PDVFSLINTQLAKH E LNGG S QQN ++ G +DR LVAY DEVKELRMR+EKLEEMV RNKKEKVVYEAAMRKL ETRK L EAAHASAS+A+ S+E+EK+WLKF
Sbjct: 22 RGSLNTLNDALALDTSNAELLAVQAELVQAISDVEEGLLHLKRARLLREADFVLQGPKGHVEEVKVESLDPNDVEVEPVVDQSYSVGSKCRFRHTDGRWYNGLILGLEGSNSAKISFLTPTSESMLMCKFFLQQRCRFGSSCRLSHGVDVPISSLKQYIPTVWEQSLAGSSIWALQDAKFGIWREAELESWDEMLNLGHVVFRDDGSSAKLGVGALSLSEFAEVSDEEDSDLGSEETDSSDSGEDNSRGLGFLETTTSQKGIQTETAIFAKWENHTRGIASKMMASMGYRDGMGLGASGQGIVDPIPVKVLPPKQSLDHAVENQENEKDKENQGKKRSRGGKRKREKKFAAACRAAKEQEESEPDVFSLINTQLAKHGETLNGG-STKKQQNMANDAGRKDDRSRLVAYEDEVKELRMRVEKLEEMVIRNKKEKVVYEAAMRKLTETRKLLAEAEAAHASASSAVISKEKEKRWLKF 497
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6PY68 ((Putative transcription factor C3H family {ECO:0000313|EMBL:PRQ26862.1}))
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 338/495 (68.28%), Postives = 404/495 (81.62%), Query Frame = 0
Match: A0A2P6PY68 ((Putative transcription factor C3H family {ECO:0000313|EMBL:PRQ26862.1}))
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 338/495 (68.28%), Postives = 404/495 (81.62%), Query Frame = 0
Query: 4 GEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
G E+ERVLE QL+IQL E +DSL+ ++HAL+SDP+N EL A+QEE+VQA KD E+GL HLKRARLLRE D AL + +DV E+LD ++Q EPL++PSYS+GSK RFRH+DGRWYNG VIGL+ S+ AK++FL PTSENML+CKFF QQRCRFG++CRLSHG+DVP+ SLK Y PT+W+QS+ GSSIWAV+D + GIWRKAELE WD L + +V+F DDGSS LG E+I+LS +AQ+S EE++SSSE SDYS+Y+++ S+GLGF E++ LQRGIQTETA+FAKWENHTRGIASKMMA+MGY EG GLGA+GQGIVDPISV+VLP KQSLDHA+ES E E N KKRSRGGKRKRDKKFAA RAAKE E +PD+FS IN+QLA H EALNGG S QQNK S +G DRR LVAY DEVKEL+MR+ KLEEMV+RNKKEKVVYEAAMRKL ETR+ L E A ASAS A+ S E+EK+WLKF
Sbjct: 2 GSEDERVLENQLDIQLQEQKDSLATLNHALVSDPNNPELRALQEEVVQAIKDVEEGLLHLKRARLLREVDSALDPSHHADKDVKEETLDPTEVQPEPLEEPSYSVGSKFRFRHSDGRWYNGQVIGLDASNTAKIAFLNPTSENMLICKFFLQQRCRFGTNCRLSHGVDVPLTSLKMYTPTMWEQSLVGSSIWAVSDGEEGIWRKAELESWDGLLGVGRVVFQDDGSSANLGEEAIALSEFAQMS-EEEDSSSEQSDYSEYEDEASQGLGFLESTRLQRGIQTETAIFAKWENHTRGIASKMMANMGYLEGTGLGASGQGIVDPISVKVLPPKQSLDHAVESCEKEEGEGNQGKKRSRGGKRKRDKKFAALTRAAKEVES-TPDMFSFINSQLAMHGEALNGG-SAKKQQNKGSGEGKKVDRRDLVAYEDEVKELKMRVGKLEEMVSRNKKEKVVYEAAMRKLIETRRLLAERETAQASASNAVVSREKEKRWLKF 493
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4G6L2 ((zinc finger CCCH domain-containing protein 22 {ECO:0000313|RefSeq:XP_018839546.2}))
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 344/498 (69.08%), Postives = 407/498 (81.73%), Query Frame = 0
Match: A0A2I4G6L2 ((zinc finger CCCH domain-containing protein 22 {ECO:0000313|RefSeq:XP_018839546.2}))
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 344/498 (69.08%), Postives = 407/498 (81.73%), Query Frame = 0
Query: 1 MATGEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
+ G EEER+LE QLE QL + RDSL+ ++ AL SDP+N ELL+V EELVQA KDAE+GLFHLKRARLLRE D AL G T EDV VE LD+ D++ EPL++ S+GSKCRFRHTDGRWY G V+ + D AK+SFLTPT+ENMLMCKFF QQRCRFG++CRLSHG+DVP+ SLK Y PTIWDQS+ GSSIWA++DSK+GIWR+AELE WDDKL +V+F DDGSS KLG ++ISLS YAQ+SD+E++ SS S E++S+G+GF E++T QRGIQTET +FAKWENHTRGIASKMMA+MGY +GMGLGA+GQG+++PI+V+VLP KQSLDHALES E E N++ KKRSRGGKRKRDKKFAA ARAAKE +E PDVFSLIN QLA HSEALNGG SG QN+ S +G DRRAL+AY DEVK+LRMRIEKLEEMV RN+KEKVVYEAAMRKL+ETRKAL EAA ASAS A+ S E+EK+WLKF
Sbjct: 52 LKMGSEEERLLENQLEFQLQDQRDSLATLNEALASDPANPELLSVHEELVQAIKDAEEGLFHLKRARLLREADSALHGFNPTSEDVKVEPLDSADIETEPLEEQICSVGSKCRFRHTDGRWYTGRVVESDSFDSAKISFLTPTAENMLMCKFFLQQRCRFGTNCRLSHGVDVPMSSLKKYIPTIWDQSLVGSSIWAISDSKSGIWREAELESWDDKLGEGQVVFRDDGSSAKLGPDAISLSEYAQVSDDEESDSSSEQSDSSNYEEDSQGIGFLESTTQQRGIQTETTIFAKWENHTRGIASKMMANMGYRDGMGLGASGQGMLNPINVKVLPPKQSLDHALESCEGEETNESQGKKRSRGGKRKRDKKFAALARAAKEEKELRPDVFSLINNQLAMHSEALNGG-SGKKHQNRGSGEGKKVDRRALIAYDDEVKDLRMRIEKLEEMVNRNRKEKVVYEAAMRKLNETRKALAEAEAAQASASNAVVSGEKEKRWLKF 548
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834HB60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150634.1}))
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 349/499 (69.94%), Postives = 412/499 (82.57%), Query Frame = 0
Match: A0A834HB60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150634.1}))
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 349/499 (69.94%), Postives = 412/499 (82.57%), Query Frame = 0
Query: 1 MATGEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNSSSEHS-DYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
MA G EEERVLE QLE+ L E RDS+S + AL SDP+NSELL+V EELVQA K+AE+GLFHLKRARLLRE D LQ +K + EDV E LD ++AEPL+D + +GSKCRFRHTDGRWYNG++IGLE SD AK+SFLTPTSENML+CKF QQRCRFG++CRLSHG+D+P+ SLK Y PT W QS+ GSSIWAV DSK GIWR+AELE WDD+L +A ++F DDG+S KLG ESI+LS YA ++DEE++SSSE S D S+Y++D+ EGLGF E + L+ GIQTETA+FAKWENHTRGIASKMMA+MGY EGMGLG +GQG+VDPISV+VLP KQSLD ALESR++GE + KKRSRGGKRKRDKKFAAAARAAKE +E PDVFSLINTQLA HSEA+NG G +QN +G +DRRA++AY DEVKELRMR+EKLEEM +RNK EKVVYEAAMRKL ETRK+L EAAHASAS A++S+EREK+WLKF
Sbjct: 1 MADGGEEERVLEGQLELHLQEQRDSISDLKQALASDPTNSELLSVYEELVQAIKEAEEGLFHLKRARLLREADSILQDSKYSAEDVKAEPLDPAKVEAEPLEDEGFYVGSKCRFRHTDGRWYNGLIIGLEGSDSAKISFLTPTSENMLICKFSLQQRCRFGTNCRLSHGVDIPLTSLKKYIPTAWAQSLVGSSIWAVCDSKTGIWREAELESWDDELRMAHIVFGDDGASTKLGIESITLSKYADMTDEENDSSSEQSDDGSEYEDDDPEGLGFHETTALRNGIQTETAIFAKWENHTRGIASKMMANMGYCEGMGLGVSGQGMVDPISVKVLPPKQSLDRALESRKDGESKEEQGKKRSRGGKRKRDKKFAAAARAAKEEKESEPDVFSLINTQLAMHSEAMNG--RGEKKQNNGLGEGKKQDRRAILAYDDEVKELRMRVEKLEEMASRNKNEKVVYEAAMRKLSETRKSLAEAEAAHASASNAVASKEREKRWLKF 497
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6MIC1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2313044.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 343/494 (69.43%), Postives = 412/494 (83.40%), Query Frame = 0
Match: A0A6A6MIC1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2313044.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 343/494 (69.43%), Postives = 412/494 (83.40%), Query Frame = 0
Query: 6 EEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDN-SSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
EEER LE QLE+QL E +DSL+A+ AL SDPSN+ELL+VQEELVQ KDAEDGL HLKRARLLRE D AL +K + + V VE LD D++ EPL++ SYS+GSKCRFR+ DGRWYNG +IGLE S+ K+SFLTPTSENM++CKFF QQRCRFG++CRLSHG +V + SLK Y PT+WDQS+ GSSIWA +D+ AGIWRKAELE WDD+L + KV+F DDGSS KLG+++++LSA A +SDEE+ SSSE SD SDY+E+ ++GLGF E+STLQRGIQTETA+FAKWENHTRGIASKMMA+MGY +GMGLGA+GQG++DPISV+VLP+KQSLDHA++S++ E ++ +KRSRGGKRKR+KKFAA AR A+E EE PDVFSLIN QLA HSEALNGG S QNK S + DRR LVAY DEVKELRMR+EKLEEM +RNKKEKVVYEAAMRKL+ETRKAL EAAHASAS A++++E+EKKWLKF
Sbjct: 4 EEERALENQLELQLQEQKDSLAALDDALASDPSNAELLSVQEELVQTIKDAEDGLLHLKRARLLREVDSALDDSKHSADYVKVEPLDPNDVEPEPLEEQSYSVGSKCRFRYNDGRWYNGKIIGLEGSNTVKISFLTPTSENMMICKFFLQQRCRFGTNCRLSHGFNVSLSSLKKYIPTMWDQSLVGSSIWAASDNNAGIWRKAELESWDDELRVGKVVFRDDGSSAKLGSDAMTLSACALMSDEEEGDSSSEQSDSSDYEEEGTQGLGFLESSTLQRGIQTETAIFAKWENHTRGIASKMMANMGYRDGMGLGASGQGMLDPISVKVLPAKQSLDHAIQSQKEEEIKEDQGRKRSRGGKRKREKKFAALARVAEEEEEMGPDVFSLINNQLAMHSEALNGG-SAKKHQNKGSGE-KKVDRRVLVAYDDEVKELRMRVEKLEEMASRNKKEKVVYEAAMRKLNETRKALVEAEAAHASASNAVATKEKEKKWLKF 495
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H3M5 ((Putative RNA-processing protein, contains G-patch domain {ECO:0000313|EMBL:PIN11900.1}))
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 332/486 (68.31%), Postives = 403/486 (82.92%), Query Frame = 0
Match: A0A2G9H3M5 ((Putative RNA-processing protein, contains G-patch domain {ECO:0000313|EMBL:PIN11900.1}))
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 332/486 (68.31%), Postives = 403/486 (82.92%), Query Frame = 0
Query: 14 QLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEED-NSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
QL+ QL E R+SL+A++ AL SDPSN ELL+V ELVQA KDAE+GLF LK+ARLLRE D LQG+ ++ +DV VE LD D +AEPL D Y IGSKCRFRHTDGRWYNGV++GLE S+ AK+SFLTPTSE+ML+CKFF QQRCRFGS+CRLSHGID+P+ SLK Y PTIW+QS+ GSSIWA++D KAGIWR+AELE WD+KL L +V+F DDGSS KLGT+SI+LS YAQ+SDEE+ ++SSE S S+Y++D +GLGF E+STLQRG+QTETA+FAKWENHTRGIASKMMA+MGY EGMGLG +GQG+++PISV+VLP KQSLDHA+++ EN E + KKR+RGGKRKRDK AAA +AA+E EE S DVFSLINTQLAKH ++LN S QQNK + + EDRRAL+AY DE+K LR+++EKLEEMV RN+KEKVVYEAAMRKL+ETRKAL E AHAS S A++ +E+EKKWLKF
Sbjct: 13 QLQFQLKEQRESLAAVADALSSDPSNPELLSVHGELVQAIKDAEEGLFQLKKARLLREADSVLQGSPNS-DDVKVEPLDPKDAEAEPLVDQGYFIGSKCRFRHTDGRWYNGVIVGLEGSNSAKISFLTPTSESMLICKFFLQQRCRFGSNCRLSHGIDIPVSSLKKYMPTIWEQSLVGSSIWALSDCKAGIWREAELESWDEKLKLGEVVFRDDGSSAKLGTDSITLSEYAQMSDEEETDTSSEQSGSSEYEDDGPQGLGFLESSTLQRGVQTETAIFAKWENHTRGIASKMMANMGYREGMGLGTSGQGMLNPISVKVLPPKQSLDHAVKNLENEENKETRLKKRTRGGKRKRDKMIAAAVKAAEEEEE-SKDVFSLINTQLAKHGQSLNNS-SAKKQQNKENGEAKREDRRALLAYEDEMKNLRLQVEKLEEMVNRNRKEKVVYEAAMRKLNETRKALADAEEAHASTSNAVARKEKEKKWLKF 495
BLAST of DCAR_003030 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5MYD9 ((zinc finger CCCH domain-containing protein 18 {ECO:0000313|RefSeq:XP_020989739.1}))
HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 327/495 (66.06%), Postives = 398/495 (80.40%), Query Frame = 0
Match: A0A6P5MYD9 ((zinc finger CCCH domain-containing protein 18 {ECO:0000313|RefSeq:XP_020989739.1}))
HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 327/495 (66.06%), Postives = 398/495 (80.40%), Query Frame = 0
Query: 4 GEEEERVLEEQLEIQLHEHRDSLSAISHALLSDPSNSELLAVQEELVQASKDAEDGLFHLKRARLLRETDVALQGTKSTIEDVMVESLDTPDLQAEPLKDPSYSIGSKCRFRHTDGRWYNGVVIGLEESDEAKVSFLTPTSENMLMCKFFQQQRCRFGSSCRLSHGIDVPIYSLKTYRPTIWDQSMAGSSIWAVADSKAGIWRKAELELWDDKLSLAKVIFLDDGSSLKLGTESISLSAYAQLSDEEDNSSSEHSDYSDYDEDNSEGLGFQENSTLQRGIQTETAVFAKWENHTRGIASKMMASMGYSEGMGLGATGQGIVDPISVRVLPSKQSLDHALESRENGEKNDNTEKKRSRGGKRKRDKKFAAAARAAKEAEEPSPDVFSLINTQLAKHSEALNGGRSGINQQNKSSKKGNNEDRRALVAYTDEVKELRMRIEKLEEMVTRNKKEKVVYEAAMRKLHETRKALERVEAAHASASTALSSEEREKKWLKF 498
G EEE+VLE+QLE QL E RDSLSAI ALL+DPSN+ELLAV ELVQA KDAE+GL HLKRARLL+E D+ L T E+ VE+LD D++ EPL++ YS+GSKCRFRH DGRWYNG V+ L++S AK+SFLTPTSENML+CKFF QQRCRFG++CRLSHG+DV + SLK Y PTIW S+AGSSIWAV+++ AGIW++AELE WD+ + +V+F DDGSS KLG E + LS YA++SD E +SS EHSD SDY+E+ +GLGF E++ LQRG+QTETA+FAKWENHTRG+ASKMMA+MGY EGMGLG TGQG++DPI+V+VLP+KQSLDHALES++ E + KKRSRGGKRKRDKKF A RAAKE EE + DVF+LIN QLA H +ALNGG SG +Q+K S + DRR L+AY DEVK+L++R+EKLE +V N+KEK VYEAAMRKL ETRKAL EA HASAS A+ S+E+EK+WLKF
Sbjct: 2 GSEEEKVLEKQLEHQLQEQRDSLSAIDDALLADPSNTELLAVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKS-AAKLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLAGSSIWAVSNAHAGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLEHSDSSDYEEEELQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKFMEAIRAAKE-EESNVDVFTLINNQLAVHGQALNGG-SG-KKQSKDSAEVKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF 492
| Match Name | Stats | Description |
|---|---|---|
| A0A7N2KTN5 | E-Value: 0.000e+0, PID: 70.16 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6P6TSS4 | E-Value: 0.000e+0, PID: 71.49 | (zinc finger CCCH domain-containing protein 18-lik... [more] |
| A0A6P6U203 | E-Value: 0.000e+0, PID: 70.86 | (zinc finger CCCH domain-containing protein 18-lik... [more] |
| A0A068VCQ1 | E-Value: 0.000e+0, PID: 70.86 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1861... [more] |
| A0A2P6PY68 | E-Value: 0.000e+0, PID: 68.28 | (Putative transcription factor C3H family {ECO:000... [more] |
| A0A2I4G6L2 | E-Value: 0.000e+0, PID: 69.08 | (zinc finger CCCH domain-containing protein 22 {EC... [more] |
| A0A834HB60 | E-Value: 0.000e+0, PID: 69.94 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7150... [more] |
| A0A6A6MIC1 | E-Value: 0.000e+0, PID: 69.43 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2313... [more] |
| A0A2G9H3M5 | E-Value: 0.000e+0, PID: 68.31 | (Putative RNA-processing protein, contains G-patch... [more] |
| A0A6P5MYD9 | E-Value: 0.000e+0, PID: 66.06 | (zinc finger CCCH domain-containing protein 18 {EC... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |