Resource Type:
Polypeptide
Name:
DCAR_004491
Identifier:
DCAR_004491.mRNA-protein
Sequence:
MSTFTCISVDSKVESPKPRQHSHAESIRPQHSHVELLRSRQHINSELKKA
ESPKPRHPINVELKKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTI
KKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVG
ATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLK
KYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGST
QAFGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSH
LPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEA
SSKLAGKKLTANENAEIDQCETSSTTSNQLHKDKVESRVQVLSGGDKVQT
GSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKI
SSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREG
QQEPLQNGIKDFKLQRNVYLQQQIVVPSSQITSDCNAMCFFRKPRLPAAV
HSGDASAKFYPANGRTTA*
Sequence Length:
569
Sequence Checksum:
7bdb5d4e40c2756ef30950b1ed7dc91b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_004491, derives from mRNA, DCAR_004491. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A2I4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 484.952 bits (1247), Expect = 2.903e-163
Identity = 264/467 (56.53%), Postives = 317/467 (67.88%), Query Frame = 0
Match: A0A5B7A2I4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 484.952 bits (1247), Expect = 2.903e-163
Identity = 264/467 (56.53%), Postives = 317/467 (67.88%), Query Frame = 0
Query: 57 HPINVELKKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQ---------AFGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHKD--KVESRVQVLSGG--DKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSM-QVMHPSSSQTVREGQQEPLQNGI 509
HP+ + + T P+P ++ K ESPK RQ+ N+E KDGT KKQKQCNCKNSRCLKLYCECFA+GIYC+GCNC NCHNNVEHE+AR+EAVGATLERNPNAFR KIA SPH SQD R +AGEVT VGKHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H NVM F+Q + FG P A KKRK Q L G + NR AQ E+ LT+ + SS L S+PL + AT+ SS YRS LA I +D +ELCS LV+VSAEA+ LA KK + AE+DQ ETS +S Q KD K LSG D+++ GSD ++Q+E AMSPGT LMCDEQD F+ SP+ V GCS+ + S +GFT++YAEQERLVLT F + LNRL+TSGS+ + M ++T QQEP+QNGI
Sbjct: 92 HPVQPQPRLTLQPRP----ALQVFKTESPKSRQRCNIEVKDGTPKKQKQCNCKNSRCLKLYCECFASGIYCDGCNCANCHNNVEHEAARQEAVGATLERNPNAFRPKIANSPHGSQDGREQAGEVTVVGKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHGDHANVMEFIQQAANAAINGAIGASGFGTSP-ATKKRKNQQLIFGSTSNDQSINRIAQS-ELESHLTASAASSSLFSVPL-SGTGTATVSGSSKFKYRSPLAGILQPQDVRELCSLLVIVSAEATKTLADKKHIMDRQAEVDQIETSVVSSTQESKDSEKEHDVEDQLSGNQTDRIRMDDCGSDGGEVQNEMAMSPGTRALMCDEQDTVFMATGSPTGVAGCSQDTTLKPSYVKGFTEVYAEQERLVLTRFWSFLNRLITSGSIKETMCSPLTKTKTGSQQEPMQNGI 551
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A629 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 463.381 bits (1191), Expect = 5.574e-155
Identity = 260/461 (56.40%), Postives = 313/461 (67.90%), Query Frame = 0
Match: A0A5J5A629 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 463.381 bits (1191), Expect = 5.574e-155
Identity = 260/461 (56.40%), Postives = 313/461 (67.90%), Query Frame = 0
Query: 64 KKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQ---------AFGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHK--DKVESRVQVLSG--GDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKI-SSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREG-QQEPLQNGI 509
KK +P+ + T++ K ESPK RQ+ N+E KDGT KKQKQCNC+NSRCLKLYCECFA+GIYC+GCNCTNCHNNVEHE+AR+EAVGATLERNPNAFR KIA SPH S+D R +AGEVT VGKHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H NVM F+Q + FG P A KKRK Q L G + NR AQ E+ LT+ SS L + AT+L SS YRS LA I +D +ELCS LVVVS+EA+ LA KK + AE+DQ ETS +S Q K +K LSG D+ Q GSD ++Q++ AMSPGT LMCDEQD F+ A SP+ V GCS+ + SSS +G T++YAEQERLVLT F + LNRL+TSGS++ S + + G QQEP+QNG+
Sbjct: 79 KKVVPGQPQLRPTLQVFKTESPKSRQRCNIEGKDGTPKKQKQCNCRNSRCLKLYCECFASGIYCDGCNCTNCHNNVEHEAARQEAVGATLERNPNAFRPKIANSPHGSRDGREQAGEVTMVGKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALCHGDHANVMEFIQQAANAAINGAIGASGFG-TPPATKKRKNQQLVFGYTSNDQSINRIAQS-ELESHLTASGASSSL-LSAPLSGTGTATVLSSSKFKYRSPLAGILQPQDVRELCSLLVVVSSEATKTLADKKHIMDRQAEVDQIETSVVSSTQESKGSEKEHDVEDQLSGNQADRFQMDDCGSDGGEVQNDMAMSPGTRALMCDEQDTEFMAAGSPTGVAGCSQDTTLKSSSYVKGLTEVYAEQERLVLTKFWSFLNRLITSGSIKETMCSPLKKTKTGSQQEPVQNGL 536
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DBM7 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 420.624 bits (1080), Expect = 1.575e-134
Identity = 235/481 (48.86%), Postives = 294/481 (61.12%), Query Frame = 0
Match: A0A4S4DBM7 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 420.624 bits (1080), Expect = 1.575e-134
Identity = 235/481 (48.86%), Postives = 294/481 (61.12%), Query Frame = 0
Query: 53 PKPRHPINVELKKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-GYI-------PQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAG----------------------------KKLTANENAEIDQCETSSTTSNQLHKDKVESRVQV------LSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGF-TDLYAEQERLVLTNFLNCLNRLVTSGSMQVMH 490
P+P+ P+ + + +P+ + T+ ESPK RQ+ N E KDGT KKQKQCNC+NSRCLKLYCECFA+GIYC+GCNCTNCHNNVEH++AR+ AVGATLERNPNAFR KIA SPH+SQD R EA EV+ V KHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H N ++ +Q + A G I P A KKRK Q L G P++ +++ QE +L + SS L S P+ A+ + + SS YRS LA + +D KELCS LV+ SAEA+ LAG ++ ++ E DQ E S+ +S H+ K+E VQ LSG S SD D Q R +SP T+ LMCDEQD F+ SP CS + SS QGF T+LYAEQERLVL F LNRL+T GS++ ++
Sbjct: 161 PRPKQPVPIMPRVAHQGRPQPRPTLPVVMTESPKSRQRCNTEVKDGTPKKQKQCNCRNSRCLKLYCECFASGIYCDGCNCTNCHNNVEHDAARQLAVGATLERNPNAFRPKIANSPHKSQDGREEAEEVSVVAKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHGDHANFISHVQQATNLAINGAIGTSGLGTPPASKKRKYQQLIFGPTPSDQ-SILGIEQFQQENYLRPSATSSSLLSAPVSCTASAS--MGSSKLTYRSPLADVLRSQDVKELCSLLVIASAEATKVLAGYTKYGGSALYAFIQHKICFLNFNLSFSDRERKMDKQVERDQLEDSAVSS--AHQGKIEGIVQTAIPDDRLSGNQADIADDSISDGSDAQTRRPLSPATIALMCDEQDAMFMAVGSPDAAASCSGNTTLKSSHGQGFITELYAEQERLVLMKFWKFLNRLITCGSIKELY 636
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251L644 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 407.142 bits (1045), Expect = 4.028e-133
Identity = 233/461 (50.54%), Postives = 293/461 (63.56%), Query Frame = 0
Match: A0A251L644 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 407.142 bits (1045), Expect = 4.028e-133
Identity = 233/461 (50.54%), Postives = 293/461 (63.56%), Query Frame = 0
Query: 68 SPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GYI-PQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDKVESRVQVLSG-------GDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGG--CSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQNG 508
+P P+Q K ESPK + + N E KDGT K+QKQCNCK+SRCLKLYCECFA+G YC+GCNC NC+NNVE+E+ARREAV ATLERNPNAFR KIA SPH +QD+R E GE +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N +A+MQ + A GY P KKRK+Q LF G + +R Q + + SS L + P+ AA+ AT L S YRS LA I +D KELCS LVVVS EA+ L+ ++ A E +Q ETS S+T +L K ++++ DKV S SD D+ R MSPGTL LMCDEQD F+ A SP+ + G CS ++ QG T++YAEQER+VLT F +CLNRL+T G ++ SS ++T Q++ L NG
Sbjct: 79 APPPQQHLPARILKPESPKSKPRPNAELKDGTPKRQKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTQDSREENGEGLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEETQALFHGDHANNIAYMQQATNAALTGAIGSSGYASPPVSKKRKVQELFFGPTAKDPSFHRLGH-LQQVVHIRPSATSSSLSTNPVARAASTAT-LGPSKFTYRSLLADIIQPQDLKELCSVLVVVSGEAAKTLSDQR-NATEQQVQNQTETSLASSTQERLQSQKETDVEKIIADDCSSANQADKVGPYDSSSDGADVPKGRPMSPGTLALMCDEQDTIFMAAASPNRLTGHVCSGTSQLPCG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETKCSSLAKTELGNQKDQLSNG 534
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AZN6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 407.142 bits (1045), Expect = 6.121e-133
Identity = 248/525 (47.24%), Postives = 323/525 (61.52%), Query Frame = 0
Match: A0A5J5AZN6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 407.142 bits (1045), Expect = 6.121e-133
Identity = 248/525 (47.24%), Postives = 323/525 (61.52%), Query Frame = 0
Query: 65 KTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GY-IPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDKVESRVQVLSGGD--------KVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQNGIKDFKLQR-------NVYLQQQIVVPSSQITS-DCNAMCFFRK---PRLPAAVHSGDASAK 558
++++P P +V K ESP+ R + N E KDGT KKQKQCNCK+SRCLKLYCECFA+GIYC+GCNC NCHNNVE+E+ARREAV ATLERNPNAFR KIA SPH ++DNR EAGE KHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H++ MA++Q + A GY P KKRK Q LF G + +R AQ + Q + + + SS L SIP+ A A L S YRS LA I +D KELCS LVV S EA+ LA ++ + AE D ETS S+T ++L K ES ++ S D KV T S SD D+ R MSPGTL LMCDEQD + A SP ++G GC+ ++ Q + YAEQER+VLT F +CLN+L+T G ++ SS ++T GQ++P+ NG D + + + + + V+P+ +++ A F P++P+ +GD K
Sbjct: 89 QSQAPHP----SVRPVKPESPRARPRQNAEVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGEALVSVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHSS-MAYIQQAANAAITGAIGSSGYGSPPISKKRKGQDLFFGPTSKDPSIHRLAQ-FQQANHIKASAPSS-LSSIPV-ARAGNMAALGPSKFTYRSLLADIIQPQDLKELCSVLVVYSGEAAKTLADRRNATEKQAE-DSMETSLASSTQDRLQSQK-ESDIEKASLDDYSSGNQAEKVGTDESSSDGADVSKGRPMSPGTLALMCDEQDTMLMAAASPKLMGHGCNTSSQLPCG--QVMAEAYAEQERIVLTKFRDCLNKLITLGEIKETKCSSLARTESGGQKDPVSNGTADARTETTNQQEPLSNSIAKSAVLPTPRMSQMATTATAAFNNDPLPKIPSPAENGDIKPK 601
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FI40 ((Tesmin/TSO1-like CXC domain-containing protein {ECO:0000313|EMBL:GFY98360.1}))
HSP 1 Score: 405.601 bits (1041), Expect = 1.272e-132
Identity = 231/446 (51.79%), Postives = 285/446 (63.90%), Query Frame = 0
Match: A0A7J0FI40 ((Tesmin/TSO1-like CXC domain-containing protein {ECO:0000313|EMBL:GFY98360.1}))
HSP 1 Score: 405.601 bits (1041), Expect = 1.272e-132
Identity = 231/446 (51.79%), Postives = 285/446 (63.90%), Query Frame = 0
Query: 81 KIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GY-IPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHKDKVESR----VQVLSGGD------KVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQN 507
K ESP+ R +++VE KDGT KKQK CNCK+SRCLKLYCECFAAGIYC+GCNC NCHNNVE+E+ARREAV ATLERNPNAFR KI SPH ++DNR E G+ +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+HTN +A++Q + A GY P KKRK Q LF G + +R AQ Y Q + + ++S L SIP AA + S YRS LA I +D KELCS L V SAEA + LA ++ AE D+ E+S +S D++ES+ VQ D + + SD VD+ R MSPGTL LMCDEQD F+ A SP + G + QG T++YAEQER+VLT F +CLNRLVT G ++ SS ++T GQ EP+ N
Sbjct: 87 KPESPRARARASVEVKDGTPKKQKHCNCKHSRCLKLYCECFAAGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIDGSPHGTRDNREEPGDALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHTNSVAYIQQAANAAITGAIGSSGYGSPPLSKKRKGQELFFGPTAKDPSIHRLAQ-YQQANHIKASAHSPSLSSIP--AARVNSATTGPSKFTYRSLLADIIQPQDLKELCSVLTVFSAEAGNALADQRDAMERQAE-DRMESSLASSAH---DRLESQKECEVQKAVADDCSSANHAEKISPTSSDGVDLSKARPMSPGTLALMCDEQDTMFMAAASPKGLMGHGRNTSSQLPHGQGMTEVYAEQERVVLTKFRDCLNRLVTLGEIKETTCSSLARTDSGGQSEPISN 525
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ABW4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634} (Fragment))
HSP 1 Score: 403.675 bits (1036), Expect = 2.927e-132
Identity = 240/464 (51.72%), Postives = 298/464 (64.22%), Query Frame = 0
Match: A0A5B7ABW4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634} (Fragment))
HSP 1 Score: 403.675 bits (1036), Expect = 2.927e-132
Identity = 240/464 (51.72%), Postives = 298/464 (64.22%), Query Frame = 0
Query: 65 KTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-GYI-------PQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDKVESRVQVLSGGD--------KVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMH-PSSSQTVREGQQEPLQNG 508
+++SP P ++ K ESP+ R + NVE KDGT KKQKQCNCK+SRCLKLYCECFA+GIYC+GCNC NCHNNVE+E+ARREAV ATLERNPNAFR KIA SP ++D+R EAGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A G I P KKRK Q LF G + +R AQ + Q + + + SS SIP+ A L S YRS LA I +D KELCS LVV S EA+ LA ++ + AE D+ ETS S+T ++L K ES V+ + D KV S SD D+ R MSPGTL LMCDEQD F+ A SP ++G GC+ ++ QG T+ Y EQER+VLT F +CLNRLVT G ++ S ++T GQ +P NG
Sbjct: 34 QSQSPHP----SIRPVKPESPRARPRQNVEVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIASSPRGTRDSREEAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGFGSPPISKKRKGQELFFGSTAKDPSIHRLAQ-FQQANHIKASALSSSS-SIPVSRVGNTAA-LGPSKFTYRSLLADIIQPQDLKELCSVLVVYSGEAAKTLADRRNATEKQAE-DRMETSLASSTQDRLQSQK-ESDVEKAAIDDYSSGNQAEKVGVDESSSDGADVSKGRPMSPGTLALMCDEQDTMFMAAASPKLLGHGCNASSQLPYG--QGMTEAYVEQERIVLTKFRDCLNRLVTLGEIKETKCFSLARTESGGQIDPASNG 486
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4PI77 ((protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:0000313|RefSeq:XP_017643336.1}))
HSP 1 Score: 405.216 bits (1040), Expect = 3.300e-132
Identity = 232/459 (50.54%), Postives = 290/459 (63.18%), Query Frame = 0
Match: A0A6P4PI77 ((protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:0000313|RefSeq:XP_017643336.1}))
HSP 1 Score: 405.216 bits (1040), Expect = 3.300e-132
Identity = 232/459 (50.54%), Postives = 290/459 (63.18%), Query Frame = 0
Query: 69 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 508
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + S + YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F++A S + GCS ++ QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSREDAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSMPVSCAATTAAVGMSKFT-YRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKAPSNGLTDHGCSTSSQLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2YSF9 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 404.831 bits (1039), Expect = 4.463e-132
Identity = 231/459 (50.33%), Postives = 289/459 (62.96%), Query Frame = 0
Match: A0A5D2YSF9 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 404.831 bits (1039), Expect = 4.463e-132
Identity = 231/459 (50.33%), Postives = 289/459 (62.96%), Query Frame = 0
Query: 69 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 508
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + +S YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F+++ S + GCS + QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSREDAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSVPVSCAATTAA-VGTSKFTYRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKSPSNGLTDHGCSTSSPLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
BLAST of DCAR_004491 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2G4R6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 404.831 bits (1039), Expect = 4.560e-132
Identity = 231/459 (50.33%), Postives = 289/459 (62.96%), Query Frame = 0
Match: A0A5D2G4R6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 404.831 bits (1039), Expect = 4.560e-132
Identity = 231/459 (50.33%), Postives = 289/459 (62.96%), Query Frame = 0
Query: 69 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 508
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + +S YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F+++ S + GCS + QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSREDAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSVPVSCAATTAA-VGTSKFTYRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKSPSNGLTDHGCSTSSPLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A2I4 | E-Value: 2.903e-163, PID: 56.53 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5A629 | E-Value: 5.574e-155, PID: 56.40 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A4S4DBM7 | E-Value: 1.575e-134, PID: 48.86 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A251L644 | E-Value: 4.028e-133, PID: 50.54 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5AZN6 | E-Value: 6.121e-133, PID: 47.24 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A7J0FI40 | E-Value: 1.272e-132, PID: 51.79 | (Tesmin/TSO1-like CXC domain-containing protein {E... [more] |
| A0A5B7ABW4 | E-Value: 2.927e-132, PID: 51.72 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P4PI77 | E-Value: 3.300e-132, PID: 50.54 | (protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:00... [more] |
| A0A5D2YSF9 | E-Value: 4.463e-132, PID: 50.33 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5D2G4R6 | E-Value: 4.560e-132, PID: 50.33 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |