Resource Type:
Polypeptide
Name:
DCAR_002969
Identifier:
DCAR_002969.mRNA-protein
Sequence:
MRETNAILCPNKIGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHA
GSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFR
DQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYW
SEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCED
ISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIY
KPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCN
CSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPG
CVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDD
VDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVENDDDKDSAPEFC
LDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMK
ELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF*
Sequence Length:
538
Sequence Checksum:
278296c2c5efec603b8536868e039699
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002969, derives from mRNA, DCAR_002969. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A8P9 ((Putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 {ECO:0000313|EMBL:MPA51353.1}) (2.1.1.43 {ECO:0000313|EMBL:MPA51353.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 370/542 (68.27%), Postives = 423/542 (78.04%), Query Frame = 0
Match: A0A5B7A8P9 ((Putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 {ECO:0000313|EMBL:MPA51353.1}) (2.1.1.43 {ECO:0000313|EMBL:MPA51353.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 370/542 (68.27%), Postives = 423/542 (78.04%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISH-AGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIP-FVENDDD--KDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M ETNAIL PNK GSIPGI+VG QFFSRAEMVAVGF+SHWLNGID I AG Y LP+AV IV+SGQYEDDLDNC+D+VYTGQGGN L GN+RQ RDQV+E+GNL LKN M+QCVPVRVVRGH+ SSYVGKVYTYDGLYKVV YW+EKGVSGF V+KFRLKRLEGQPLLTT+QVQ++ G++P S+S++ GLVCEDI+ GQE +PIPATN VDDPP+APT GFTYC IQV+ V+LP A GC+C C K+C+C +LNGS+ PYV RDGGRLIEPKAVV+ECGPNCGCGPGC+NR SQRGLKYRLEV+RTPKKGWAVRSWD+IPSGAPVCEY G LMKTD++D + ENN+IFDIDCLQTMKGLDGRERRL +SIP +++N DD D+ PEFC+DAG TGN+ARFINHSCQPNLFVQCVLS+HHD+K ARVVLFAADNIPP+KEL+YDY YALDSV+ PDGKI+Q+ CYCGAA CRKRLF
Sbjct: 232 MMETNAILYPNKRYGSIPGIDVGHQFFSRAEMVAVGFHSHWLNGIDFIGQSAGKGEYSGYTLPLAVAIVLSGQYEDDLDNCEDVVYTGQGGNNLLGNKRQIRDQVMERGNLALKNCMEQCVPVRVVRGHQSASSYVGKVYTYDGLYKVVKYWAEKGVSGFTVYKFRLKRLEGQPLLTTNQVQYSRGRIPHSISEMHGLVCEDITGGQEDIPIPATNSVDDPPIAPT----------------------------------------------------GFTYCKFIQVARSVKLPRNATGCDCKDTCRDPKSCACVRLNGSDFPYVHRDGGRLIEPKAVVFECGPNCGCGPGCINRTSQRGLKYRLEVFRTPKKGWAVRSWDHIPSGAPVCEYTGILMKTDEIDTVSENNFIFDIDCLQTMKGLDGRERRLRDVSIPTYLDNGDDHKSDNVPEFCIDAGSTGNIARFINHSCQPNLFVQCVLSSHHDIKLARVVLFAADNIPPLKELTYDYGYALDSVMGPDGKIRQMPCYCGAADCRKRLF 721
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H428 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46971.1}))
HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 360/540 (66.67%), Postives = 417/540 (77.22%), Query Frame = 0
Match: F6H428 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46971.1}))
HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 360/540 (66.67%), Postives = 417/540 (77.22%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCI--SHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVENDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M ETNAIL P K G IPG++VG QFFSRAEMVAVGF+SHWLNGID + S+ E S Y P+AV IV+SGQYEDDLDN +D+VYTGQGGN L GN+RQ +DQV+E+GNL LKN M+QCVPVRV+RGH+ +SYVGKVYTYDGLYKVV YW+EKGVSGF VFK+RLKRLEGQP+LTT+QVQ+A G+VP S+S++RGLVCEDIS GQE +PIPATNLVDDPP APT GFTYCNSI+VS+ V+LP A+GCNC G C +TCSCA LNGS+ PYV RDGGRLIE K VV+ECGP CGCGPGC+NR SQRGLKYRLEV+RTPKKGWAVRSWDYIPSGAP+CEY G LM+TD++D + +NNYIFDIDCLQTM+GLDGRERR +S+P +D +S PEFC+DAG TGNVARFINHSC+PNLFVQCVLS+HHD K ARV+LFAADNIPP++EL+YDY Y LDSV+ PDGKIKQ+LC+CGAA CRKRL
Sbjct: 39 MMETNAILYPEKRFGPIPGVDVGHQFFSRAEMVAVGFHSHWLNGIDYMGQSYNRREYS-GYTFPLAVAIVLSGQYEDDLDNSEDVVYTGQGGNNLLGNKRQVQDQVMERGNLALKNCMEQCVPVRVIRGHKSANSYVGKVYTYDGLYKVVQYWAEKGVSGFTVFKYRLKRLEGQPILTTNQVQYARGRVPNSISEIRGLVCEDISGGQEDIPIPATNLVDDPPFAPT----------------------------------------------------GFTYCNSIKVSKSVKLPSNAIGCNCKGTCTDPRTCSCAMLNGSDFPYVHRDGGRLIEAKDVVFECGPKCGCGPGCLNRTSQRGLKYRLEVFRTPKKGWAVRSWDYIPSGAPICEYKGILMRTDELDNVSDNNYIFDIDCLQTMRGLDGRERRFRDVSMPTSTDDQKSESVPEFCIDAGSTGNVARFINHSCEPNLFVQCVLSSHHDAKLARVMLFAADNIPPLQELTYDYGYTLDSVMGPDGKIKQMLCFCGAADCRKRLL 525
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124S3J1 ((Histone H3-K9 methyltransferase, plant {ECO:0000313|EMBL:KVH65602.1}))
HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 360/560 (64.29%), Postives = 414/560 (73.93%), Query Frame = 0
Match: A0A124S3J1 ((Histone H3-K9 methyltransferase, plant {ECO:0000313|EMBL:KVH65602.1}))
HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 360/560 (64.29%), Postives = 414/560 (73.93%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQV---------------------QFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIP-FVENDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M +N ILCP K IGSIPGI+VG QFFSR EMV VGF++HWLNGID I + + Y LPI V IV+SGQYEDDLDNC+D+VYTGQGGN L GN+RQ DQV+++GNLGLKN +DQ VPVRV+RGH+ SSYVGKVYTYDGLYKVV +W+EKGVSGF VFKF+LKR+EGQP L T+QV FA G++P SVS++RGLVCEDIS G E +PIPATNLVDDP VAPT G+TYC SIQVS+ V LP A GCNC G+C + C+CA+LNGS+ PYV RDGGRLIEPKAVV+ECGPNCGCG CVNR SQRGL+YRLEV+RTPKKGWAVRSWDYIPSGAPVCEYIG L KTDDVD+ PENNYIFDIDCLQTMKG+ GRERR+G +++P ++ DD+KDS PEFC+DAG TGNVARFINHSCQPNLFVQCVLS HHD+ QARV+LFAADNIPP+KEL+YDY Y L+SV+ PDGK+KQL C+CGA CRKRLF
Sbjct: 207 MMTSNTILCPQKRIGSIPGIDVGHQFFSRCEMVTVGFHNHWLNGIDYIGQSSQKEYPQYKLPITVAIVLSGQYEDDLDNCEDVVYTGQGGNNLLGNKRQISDQVMKRGNLGLKNCLDQDVPVRVIRGHQSSSSYVGKVYTYDGLYKVVKHWAEKGVSGFTVFKFQLKRIEGQPSLVTEQVPMLAHGSFKKSIPEHNYIIDVHFAHGRIPSSVSEIRGLVCEDISGGLENIPIPATNLVDDPAVAPT----------------------------------------------------GYTYCKSIQVSKSVVLPTSASGCNCQGSCTDPRNCACARLNGSDFPYVHRDGGRLIEPKAVVFECGPNCGCGLTCVNRTSQRGLRYRLEVFRTPKKGWAVRSWDYIPSGAPVCEYIGILKKTDDVDSNPENNYIFDIDCLQTMKGIGGRERRVGEVAMPSLLDKDDEKDSGPEFCIDAGGTGNVARFINHSCQPNLFVQCVLSVHHDITQARVILFAADNIPPLKELTYDYGYELNSVLGPDGKVKQLACFCGAPDCRKRLF 714
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067L3Q8 ((Uncharacterized protein {ECO:0000313|EMBL:KDP41858.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 345/543 (63.54%), Postives = 414/543 (76.24%), Query Frame = 0
Match: A0A067L3Q8 ((Uncharacterized protein {ECO:0000313|EMBL:KDP41858.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 345/543 (63.54%), Postives = 414/543 (76.24%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVEN-----DDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M ETNAI+ P K IG + GI VG QF+SRAEMVAVGF+SHWLNGID + + S+ Y P+A+ IV+SG YEDDLDN +D++YTGQGG+ L GN+RQ RDQV+E+GNL LKN ++Q VPVRV+RGHE SSY GKVYTYDGLYKVV YW+EKG+SGF VFK+RL+R EGQP+LTT+QVQF G+VP+S+S++RGLVCEDIS G+E VPIPATNLVDDPPV PT GFTY S+QVS+ ++LP A+GC+C G C +TC+CA+LNG++ PYV RDGGRLIE KA+VYECGPNCGCGP CVNR SQRGLKYR EV+R+PKKGWAVRSWD+IPSGAP+CEY+G LM+T+D+D++ +NNYIF+IDCLQTM GL GRERRLG +S+P + N D +S PEFC+DAG TGN+ARFINHSC+PNLFVQCVLS+HHDLK ARV+LFAADNIPP++EL+YDY YALDSV PDGKIKQ+ CYCGAA CRKRLF
Sbjct: 199 MLETNAIMYPEKKIGDLAGINVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYSKEYADYTFPLAIAIVLSGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQVMERGNLALKNCVEQGVPVRVIRGHESASSYSGKVYTYDGLYKVVQYWAEKGISGFTVFKYRLRRFEGQPILTTNQVQFIYGRVPQSISEIRGLVCEDISGGREDVPIPATNLVDDPPVPPT----------------------------------------------------GFTYRKSLQVSKSIKLPTSAVGCDCKGGCVDPRTCACAQLNGTDFPYVHRDGGRLIEAKAIVYECGPNCGCGPHCVNRTSQRGLKYRFEVFRSPKKGWAVRSWDFIPSGAPICEYVGVLMRTEDLDSVLDNNYIFEIDCLQTMSGLGGRERRLGDVSVPTINNSNRPEDQKSESVPEFCIDAGSTGNIARFINHSCEPNLFVQCVLSSHHDLKLARVMLFAADNIPPLQELTYDYGYALDSVTGPDGKIKQMACYCGAADCRKRLF 689
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R0T9 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS18252.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 353/541 (65.25%), Postives = 407/541 (75.23%), Query Frame = 0
Match: A0A2R6R0T9 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS18252.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 353/541 (65.25%), Postives = 407/541 (75.23%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFV--ENDDDK-DSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M+E NAIL P+K IG IPGI+VG QF+SRAEMVA+GF+SHWLNGID I + Y LPI IVMSG YEDDLDNCDDIVYTGQGGN L GN+RQ +DQV+ GNLGLKN +DQ V VRVVRGH+ SYV +VYTYDGLYKVV YW+EKGVSGF V+KF LKRLEGQPLLTT+QVQF+ G++P S+S++RGLVCEDIS GQE +PIPATNLVDDPP+APT G TYC S+QV + V+LP A GC C G C K+C+CA+LNG + PYV RDGGRLIEPKAVV+ECGPNCGCGP CVNR SQ+G++YRLEV+RTPKKGW VRSWD+IPSGAPVCEYIG LMKTD+VD ENNY+FDIDCLQTMKGLDGRERRL +SIP ++DD K D PEFC+DAG GN++RFINHSCQPNLFVQCVLS+HHD+KQAR+VLFAADNIPP+KEL+YDY Y +D V+ PDGKI+Q+ CYCGA CRKRL
Sbjct: 242 MKEINAILYPDKRIGPIPGIDVGHQFYSRAEMVAIGFHSHWLNGIDYIGKTAGKQYSNYKLPITTAIVMSGHYEDDLDNCDDIVYTGQGGNDLLGNKRQKKDQVMTLGNLGLKNCIDQDVAVRVVRGHQSTHSYVKRVYTYDGLYKVVKYWAEKGVSGFTVYKFSLKRLEGQPLLTTNQVQFSRGRIPNSISEIRGLVCEDISLGQEGIPIPATNLVDDPPIAPT----------------------------------------------------GLTYCKSMQVRKSVKLPSNAPGCGCKGTCVDPKSCACARLNGLDFPYVHRDGGRLIEPKAVVFECGPNCGCGPECVNRTSQKGMRYRLEVFRTPKKGWGVRSWDFIPSGAPVCEYIGVLMKTDEVDPGSENNYVFDIDCLQTMKGLDGRERRLRDVSIPLPLDKSDDQKSDCVPEFCIDAGSLGNISRFINHSCQPNLFVQCVLSSHHDIKQARIVLFAADNIPPLKELTYDYGYVVDGVLGPDGKIRQMACYCGAEDCRKRLL 730
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RZC3 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS35329.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 353/541 (65.25%), Postives = 407/541 (75.23%), Query Frame = 0
Match: A0A2R6RZC3 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS35329.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 353/541 (65.25%), Postives = 407/541 (75.23%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFV--ENDDDK-DSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M+ETNAIL P+K IG IPGI+VG QF+SRAEMVA+GF+SHWLNGID I + Y LPI IVMSG YEDDLDNCDDIVYTGQGGN L GN+RQ +DQV+ GNLGLKN +DQ V VRVVRGH+ SYV +VYTYDGLYKVV YW+EKGVSGF V+KF LKRLEGQPLLTT+QVQF+ G++P S+S++RGLVCEDIS+GQE +PIPATNLVDD P+APT GFTYC S+QV + V+LP A GC C G C K C+C +LNGS+ PYV RDGGRLIEPKAVV+ECGPNCGCGP CVNR SQ+G++YRLEV+ TPKKGW VRSWD+IPSGAPVCEYIG LMKTD+VD ENNY+FDIDCLQTMKGLDGRE RL +SIP +NDD K D PEFC+DAG +GN++RFINHSCQPNLFVQCVLS+HHD+KQAR+VLFAADNIPP+KEL+YDY Y +D V+ PDGKI+Q+ CYCGA CRKRL
Sbjct: 241 MKETNAILYPDKRIGPIPGIDVGHQFYSRAEMVAIGFHSHWLNGIDYIGKTAGKQYSNYKLPITTAIVMSGHYEDDLDNCDDIVYTGQGGNDLLGNKRQKKDQVMTLGNLGLKNCIDQDVLVRVVRGHQSAHSYVKRVYTYDGLYKVVKYWAEKGVSGFTVYKFSLKRLEGQPLLTTNQVQFSRGRIPNSISEIRGLVCEDISWGQEGIPIPATNLVDDQPIAPT----------------------------------------------------GFTYCKSMQVRKSVKLPSNAPGCGCEGTCVDPKRCACVRLNGSDFPYVHRDGGRLIEPKAVVFECGPNCGCGPECVNRTSQKGMRYRLEVFCTPKKGWGVRSWDFIPSGAPVCEYIGVLMKTDEVDPTSENNYVFDIDCLQTMKGLDGRESRLRDVSIPLPLDKNDDQKSDCVPEFCIDAGSSGNISRFINHSCQPNLFVQCVLSSHHDIKQARIVLFAADNIPPLKELTYDYGYVVDGVLGPDGKIRQMACYCGAEDCRKRLL 729
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834Z1Z1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8400074.1}))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 352/553 (63.65%), Postives = 413/553 (74.68%), Query Frame = 0
Match: A0A834Z1Z1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8400074.1}))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 352/553 (63.65%), Postives = 413/553 (74.68%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSELSR--AYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVE----NDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMK----------ELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRL 536
M ET AIL P K G +PGI+VG QFFSRAEMVAVGF+SHWLNGID + + +L Y P+AV IV+SGQYEDDLDN +D+VYTGQGGN L GN+RQ +DQV+++GNL LKNSM+QCVPVRV+RGH SSY GKVYTYDGLYKVV+YW+EKGVSGF VFK+RL+R+EGQP+LTT+QV F+ G P+S S++RGLVCEDIS QE + IPATNLVDDPPVAPT G++Y SIQVS+ V+LP+ A GC+C G C KTC+CA+LNGS+ PYV RDGGRLIE KAVV+ECGP CGCGPGCVNR SQRG KYRLEV+RTPKKGWAVRSWDYIPSGAP+CEY G LM+TD++D + ENN+IF+IDCLQTMKGLDGRERRLG + IP +D+ +S PEFC+DAG GNVARFINHSC+PNLFVQCVLS+HHD+K ARVVLFAADNIPP++ EL+YDY YALDSV+ PDGKIK++LCYCGAA CRKRL
Sbjct: 204 MMETKAILYPGKRFGQLPGIDVGHQFFSRAEMVAVGFHSHWLNGIDYMGQSYKKLMEYSGYTFPLAVAIVLSGQYEDDLDNSEDVVYTGQGGNNLLGNKRQVQDQVMDRGNLALKNSMEQCVPVRVIRGHGSASSYCGKVYTYDGLYKVVNYWAEKGVSGFTVFKYRLRRIEGQPILTTNQVHFSRGHAPRSFSEIRGLVCEDISGDQEDIHIPATNLVDDPPVAPT----------------------------------------------------GYSYSKSIQVSKSVKLPMNATGCDCKGTCVDPKTCACARLNGSDFPYVRRDGGRLIEAKAVVFECGPKCGCGPGCVNRTSQRGSKYRLEVFRTPKKGWAVRSWDYIPSGAPICEYTGVLMRTDEIDNVSENNFIFEIDCLQTMKGLDGRERRLGDVCIPASHPDKTDDNRSESVPEFCIDAGSIGNVARFINHSCEPNLFVQCVLSSHHDVKLARVVLFAADNIPPLQKRGFDEGEMLELTYDYGYALDSVIGPDGKIKEMLCYCGAADCRKRL 704
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540LCZ0 ((Uncharacterized protein {ECO:0000313|EMBL:TQD84343.1}))
HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 355/544 (65.26%), Postives = 418/544 (76.84%), Query Frame = 0
Match: A0A540LCZ0 ((Uncharacterized protein {ECO:0000313|EMBL:TQD84343.1}))
HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 355/544 (65.26%), Postives = 418/544 (76.84%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCI-SHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVE-----NDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M E IL K IGSIPGI+VG QF+SRAEMVAVGF+SHWLNGID + + G Y P+AV IV+SG YEDDLDN +D+VYTGQGG+ L G++RQ RDQVLE+GNL LKN +DQCVPVRVVRGH+CKSSYVGKVYTYDGLYKVV YW+EKG+SGF VFK+RL+R+EGQP+LTT+QVQF G+VP+SV+++RGLVCEDIS GQE VPIPATNLVDDPPVAPTGKL+ F P +H + + + FTYC SIQV+++V+LP A GCNC G+C KTC+C LNG + PYV RDGGRLIE K VV+ECGP CGCG C+NR SQRGLKYR EV+RTP KGWAVRSWD+IPSGAPVCEYIG + +T+DVD+ EN YIFD+DCLQTMKGLDGRERR +SIP V +D DS PEFC+DAG GN+ARFINHSC+PNLFVQ VLS+HHDLK ARV+LFAADNIPP++EL+YDY YALDSV+ PDGK+K++ C+CGA CRKRLF
Sbjct: 46 MMERKEILNATKRIGSIPGIDVGHQFYSRAEMVAVGFHSHWLNGIDYMGQNYGKGEYSNYTFPLAVAIVISGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQVLERGNLALKNCVDQCVPVRVVRGHDCKSSYVGKVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRIEGQPVLTTNQVQFINGRVPQSVAEIRGLVCEDISGGQEDVPIPATNLVDDPPVAPTGKLNYQILEIF----------------PVLDTH----MWRLNFFMDMWSPPICFTYCKSIQVAQNVKLPTDATGCNCKGSCTDPKTCACTMLNGDDFPYVQRDGGRLIEAKDVVFECGPKCGCGLSCINRTSQRGLKYRFEVFRTPMKGWAVRSWDFIPSGAPVCEYIGVIRRTEDVDSALENYYIFDMDCLQTMKGLDGRERRSQAVSIPAVHSLERPDDQSSDSGPEFCIDAGSGGNIARFINHSCEPNLFVQSVLSSHHDLKLARVMLFAADNIPPLQELTYDYGYALDSVMGPDGKVKKMFCHCGATGCRKRLF 569
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836YF79 ((Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH {ECO:0000313|EMBL:KAG5252144.1}))
HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 347/544 (63.79%), Postives = 416/544 (76.47%), Query Frame = 0
Match: A0A836YF79 ((Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH {ECO:0000313|EMBL:KAG5252144.1}))
HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 347/544 (63.79%), Postives = 416/544 (76.47%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDC--ISHAGSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIP----FVENDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M E NA + P K IG +PGI VG +F+SRAEMV VGF+SHWLNGID +S++ E Y P+AV IV+SG YEDDLDN +D++YTGQGG+ L GN+RQ RDQ LE+GNL LKN ++QCVPVRVVRGHEC SSY G+VYTYDGLYKVV YW+EKG+SGF VFK+RL+RLEGQP+LTT+QVQF+ G+VP+SV+++RGLVCEDIS GQE VPIPATNLVDDPPVAP+ G+TYC S+Q++++V+LP GCNC G C +TC+CAKLNGS+ PYV +GGRLIE +AVV+ECGPNCGCGPGCVNR SQRG+K+RLEV+RTPKKGWAVRSW++IP+GAPVCEYIG L++T+D D + ENNYIFDIDCLQTM+GL GRERRLG +S+P F +D +S PEFC+DAG TGN+ARFINHSC+PNLFVQCVLS+HHD+K ARV+LFAADNIPPM+EL+YDY YALDSV P GKIKQ+ CYCGAA CRKRLF
Sbjct: 200 MFEANATMYPEKRIGDLPGISVGHRFYSRAEMVVVGFHSHWLNGIDYMGLSYSKGEYHN-YTFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQKLERGNLALKNCVEQCVPVRVVRGHECASSYCGRVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVQFSYGRVPQSVAEIRGLVCEDISGGQEDVPIPATNLVDDPPVAPS----------------------------------------------------GYTYCKSLQIAKNVKLPANVSGCNCQGTCVDPRTCACAKLNGSDFPYVQLNGGRLIEARAVVFECGPNCGCGPGCVNRTSQRGIKHRLEVFRTPKKGWAVRSWEFIPAGAPVCEYIGALVRTEDTDHVCENNYIFDIDCLQTMRGLGGRERRLGDVSVPSINCFDGDDQKSESVPEFCIDAGSTGNIARFINHSCEPNLFVQCVLSSHHDVKLARVMLFAADNIPPMQELTYDYGYALDSVYGPSGKIKQMPCYCGAADCRKRLF 690
BLAST of DCAR_002969 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3N7EKI4 ((Uncharacterized protein {ECO:0000313|EMBL:RQO87383.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 345/543 (63.54%), Postives = 415/543 (76.43%), Query Frame = 0
Match: A0A3N7EKI4 ((Uncharacterized protein {ECO:0000313|EMBL:RQO87383.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 345/543 (63.54%), Postives = 415/543 (76.43%), Query Frame = 0
Query: 1 MRETNAILCPNK-IGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHAGSE-LSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFRDQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYWSEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCEDISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIYKPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCNCSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPGCVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDDVDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSI----PFVENDDDKDSAPEFCLDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMKELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF 537
M E NA + P K IG +PGI VG +F+SRAEMVAVGF+SHWLNGID + + + + Y P+AV IV+SG YEDDLDN +D++YTGQGG+ L GN+RQ RDQ LE+GNL LKN ++QCVPVRVVRGHEC SSY G+VYTYDGLYKVV YW+EKG+SGF VFK+RL+R+EGQP+LTT+QVQF+ G+VP+SV+++RGLVCEDIS GQE VPIPATNLVDDPPVAP+ G+TYC S+Q++++V+LP GCNC G C +TC+CAKLNGS+ PYV +GGRLIE +AVV+ECGP+CGCGPGCVNR SQRG+K+RLEV+RTPKKGWAVRSWD+IPSGAPVCEYIG L++T+D D + ENNYIFDIDCLQTM+GL GRERRLG +S+ F +D +S PEFC+DAG TGN+ARFINHSC+PNLFVQCVLS+HHD+K ARV+LFAADNIPPM+EL+YDY YALDSV P GKIKQ+ CYCGAA CRKRLF
Sbjct: 196 MFEANATMYPEKRIGDLPGISVGHRFYSRAEMVAVGFHSHWLNGIDYMGQSYRKGVYHNYTFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQKLERGNLALKNCVEQCVPVRVVRGHECASSYCGRVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRMEGQPILTTNQVQFSYGRVPQSVAEIRGLVCEDISGGQEDVPIPATNLVDDPPVAPS----------------------------------------------------GYTYCKSLQIAKNVKLPANVSGCNCQGTCVDPRTCACAKLNGSDFPYVQINGGRLIEARAVVFECGPSCGCGPGCVNRTSQRGIKHRLEVFRTPKKGWAVRSWDFIPSGAPVCEYIGALVRTEDTDHVCENNYIFDIDCLQTMRGLGGRERRLGDVSVSAINSFDGDDQKSESVPEFCIDAGSTGNIARFINHSCEPNLFVQCVLSSHHDVKLARVMLFAADNIPPMQELTYDYGYALDSVSGPSGKIKQMPCYCGAADCRKRLF 686
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A8P9 | E-Value: 0.000e+0, PID: 68.27 | (Putative histone-lysine N-methyltransferase, H3 l... [more] |
| F6H428 | E-Value: 0.000e+0, PID: 66.67 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4697... [more] |
| A0A124S3J1 | E-Value: 0.000e+0, PID: 64.29 | (Histone H3-K9 methyltransferase, plant {ECO:00003... [more] |
| A0A067L3Q8 | E-Value: 0.000e+0, PID: 63.54 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4185... [more] |
| A0A2R6R0T9 | E-Value: 0.000e+0, PID: 65.25 | (Histone-lysine N-methyltransferase {ECO:0000313|E... [more] |
| A0A2R6RZC3 | E-Value: 0.000e+0, PID: 65.25 | (Histone-lysine N-methyltransferase {ECO:0000313|E... [more] |
| A0A834Z1Z1 | E-Value: 0.000e+0, PID: 63.65 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8400... [more] |
| A0A540LCZ0 | E-Value: 0.000e+0, PID: 65.26 | (Uncharacterized protein {ECO:0000313|EMBL:TQD8434... [more] |
| A0A836YF79 | E-Value: 0.000e+0, PID: 63.79 | (Histone-lysine N-methyltransferase, H3 lysine-9 s... [more] |
| A0A3N7EKI4 | E-Value: 0.000e+0, PID: 63.54 | (Uncharacterized protein {ECO:0000313|EMBL:RQO8738... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |