DCAR_002272

Resource Type: 
Polypeptide
Name: 
DCAR_002272
Identifier: 
DCAR_002272.mRNA-protein
Sequence: 
MAERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPI
DDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNP
RPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAN
GACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISI
FGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQ
VMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMPSVEDEGLSEHAVGDPE
EIAHMLHTSILNSTDRRKLGYSCATGNPIDDCWRCDPNWFINRKRLAGCG
VGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNR
DMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHD
CRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLV
DAVMGSTAITVSNNFFTHHNELLGGHENASDNCLQPFWRGSCAENAKVTK
RVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSS
MVGTITSGAGVLNCRKGHPC*
Sequence Length: 
621
Sequence Checksum: 
fe3906e5b88bbad1e5c1ca5a03ca04a3
View location in JBrowse: 
DCARv2_Chr1:27687686..27694997+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_002272, derives from mRNA, DCAR_002272.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6QRX6 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 253/287 (88.15%), Postives = 267/287 (93.03%), Query Frame = 0
 
Query:    1 MAERVNEV---QGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA RVNE    +GLN+HAV NP+EIA+MVDMSI NST+RRKLGYFSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGRFYVVTD  DDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVI LKQEL+MNSFKTIDGRGVNVHIANGACITIQFVTN+IVHGL+IHDC+PTGNAMVRSSPSHFGWRTMADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN FTHHNE        VMLLGHSDSY RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   55 MAARVNENDDDEGLNKHAVENPEEIASMVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPKDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELLMNSFKTIDGRGVNVHIANGACITIQFVTNIIVHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNE--------VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMP 333

HSP 2 Score: 446.047 bits (1146), Expect = 1.667e-149
Identity = 236/390 (60.51%), Postives = 277/390 (71.03%), Query Frame = 0
 
Query:  287 EDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNE-LLGGHENA--SDNCLQP------FWRGSCAENAKVT----KRVNTNADQWKGWNWRSEGDLFLNEA---YFVPS--------------------------------GSRASASYARASSMPAK-------SSSMVGTITSGAGVLNCRKGHPC 620
            +DEGL++HAV +PEEIA M+  SI NST+RRKLGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDP DDDPVNPRPGTLRHAVIQ+EPLWI+F RDM I LKQEL+MNS+KTIDGRGVNVHIANGACITIQF++++I+HGLHIHDC+PTGNAMVRSSPSHFGWR+MADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN FTHHNE +L GH ++   D  +Q       F  G      +        VN +   W+ +      +  +N     Y  P+                                G+  + S A AS++ A+       SS+MVGTIT+GAGVL CR+GH C
Sbjct:   64 DDEGLNKHAVENPEEIASMVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPKDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELLMNSFKTIDGRGVNVHIANGACITIQFVTNIIVHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPTNPFAKEVTKRVETAQTQWRGWNWRSEGDLLLNGAFFTPSGAGASAVYARASSLGAKSSAMVGTITAGAGVLGCRRGHTC 453
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZL49 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 248/284 (87.32%), Postives = 265/284 (93.31%), Query Frame = 0
 
Query:    1 MAERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+ LNEHAV +P+EIA+MV+MSI NST+RRKLGYFSCGTGNPIDDCWRCDPNW RNRKRLADCGIGFGRNAIGGRDGRFYVVTD GDDDPVNPRPGTLRHAVIQD PLWIVFKRDMVI LKQELIMNSFKTIDGRGVNVHIANG CITIQF+TNVI+HGLNIHDC+PTGNAMVRSSP+HFGWRTMADGDAISIFGSSH+W+DHNSLSNCADGLVDAVMGST+IT+SNN+FTHHNE        VMLLGHSDSY RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   52 MAARLVEVEALNEHAVDDPEEIASMVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIRLKQELIMNSFKTIDGRGVNVHIANGGCITIQFITNVIIHGLNIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTSITISNNYFTHHNE--------VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMP 327

HSP 2 Score: 437.573 bits (1124), Expect = 2.788e-146
Identity = 231/391 (59.08%), Postives = 267/391 (68.29%), Query Frame = 0
 
Query:  286 VEDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNE-LLGGHENA--SDNCLQP------FWRGSCAENAKVT----KRVNTNADQWKGWNWRSEGDLFLNEA---YFVPSGSRASASYARASSMPAKSSS---------------------------------------MVGTITSGAGVLNCRKGHPC 620
            VE E L+EHAV DPEEIA M+  SI NST+RRKLGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQ+ PLWI+F RDM I LKQELIMNS+KTIDGRGVNVHIANG CITIQFI++VIIHGL+IHDC+PTGNAMVRSSP+HFGWR+MADGDAISIFGSSH+W+DHNSLSNCADGLVDAVMGST+IT+SNN+FTHHNE +L GH ++   D  +Q       F  G      +        VN +   W+ +      +  +N     Y  P+ + A     R  +  ++  S                                       MV +IT GAGVL CR+GH C
Sbjct:   57 VEVEALNEHAVDDPEEIASMVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIRLKQELIMNSFKTIDGRGVNVHIANGGCITIQFITNVIIHGLNIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTSITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPTNAFAKEVTKRVDTATSQWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVASITYGAGVLPCRRGHQC 447
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GQW0 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 525.783 bits (1353), Expect = 1.027e-180
Identity = 246/283 (86.93%), Postives = 265/283 (93.64%), Query Frame = 0
 
Query:    2 AERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            A R+ EV  LNEHAV NP+E+A+MV+MSI NST+RR LGYFSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGRFYVVTD GDDDPVNPRPGTLRHAVIQ+EPLWIVFKRDMVI LKQELIMNSFKTIDGRG NVHIANGACITIQF+TNVI+HGL+IHDC+PTGNAMVRSSPSHFGWRT+ADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY+RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   58 ATRLEEVGALNEHAVDNPEEVASMVEMSIKNSTERRNLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTIADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMP 332

HSP 2 Score: 482.641 bits (1241), Expect = 7.703e-164
Identity = 259/390 (66.41%), Postives = 285/390 (73.08%), Query Frame = 0
 
Query:  287 EDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVS-----------------------------------------------------NNFFTH-HNELLGGHENASDNCLQPFWRGSCAENAK-VTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            E   L+EHAV +PEE+A M+  SI NST+RR LGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQ EPLWI+F RDM I LKQELIMNS+KTIDGRG NVHIANGACITIQFI++VIIHGLHIHDC+PTGNAMVRSSPSHFGWR++ADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+S                                                     NN +TH     +GG    + N     +       AK VTKRV+T A QWKGWNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMVG+ITSGAGVL CR+GH C
Sbjct:   63 EVGALNEHAVDNPEEVASMVEMSIKNSTERRNLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTIADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGAGVLGCRRGHQC 452
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CYF6 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 525.398 bits (1352), Expect = 1.243e-180
Identity = 246/283 (86.93%), Postives = 265/283 (93.64%), Query Frame = 0
 
Query:    2 AERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            A R+ EV  LNEHAV NP+E+A+MV+MSI NST+RR LGYFSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGRFYVVTD GDDDPVNPRPGTLRHAVIQ+EPLWIVFKRDMVI LKQELIMNSFKTIDGRG NVHIANGACITIQF+TNVI+HGL+IHDC+PTGNAMVRSSPSHFGWRT+ADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY+RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   56 ATRLEEVGALNEHAVDNPEEVASMVEMSIKNSTERRNLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTIADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMP 330

HSP 2 Score: 482.256 bits (1240), Expect = 9.332e-164
Identity = 259/390 (66.41%), Postives = 285/390 (73.08%), Query Frame = 0
 
Query:  287 EDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVS-----------------------------------------------------NNFFTH-HNELLGGHENASDNCLQPFWRGSCAENAK-VTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            E   L+EHAV +PEE+A M+  SI NST+RR LGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQ EPLWI+F RDM I LKQELIMNS+KTIDGRG NVHIANGACITIQFI++VIIHGLHIHDC+PTGNAMVRSSPSHFGWR++ADGDA+SIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+S                                                     NN +TH     +GG    + N     +       AK VTKRV+T A QWKGWNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMVG+ITSGAGVL CR+GH C
Sbjct:   61 EVGALNEHAVDNPEEVASMVEMSIKNSTERRNLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTIADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGAGVLGCRRGHQC 450
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C317 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 523.087 bits (1346), Expect = 9.656e-180
Identity = 245/284 (86.27%), Postives = 263/284 (92.61%), Query Frame = 0
 
Query:    1 MAERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+  NEHAV +P+E+A+MV+MSI NST RRKLGYFSCGTGNPIDDCWRCDPNW RNRKRLADCGIGFGRNAIGGRDGRFYVVTD GDDDPVNPRPGTLRHAVIQD PLWIVFKRDMVI LKQELIMNSFKTIDGRGVNVHIANGACITIQF+TNVI+HG++IHDC+PTGNAMVR+SPSHFGWRTMADGD ISIFGSSH+W+DHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   52 MAARLEEVEFFNEHAVDDPEEVASMVEMSIQNSTARRKLGYFSCGTGNPIDDCWRCDPNWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIRLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGVHIHDCKPTGNAMVRNSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMP 327

HSP 2 Score: 483.797 bits (1244), Expect = 1.982e-164
Identity = 259/390 (66.41%), Postives = 286/390 (73.33%), Query Frame = 0
 
Query:  287 EDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNF---------------------------FTHHNELL---------------------------GGHENASDNCLQPFWRGSCAENAK-VTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            E E  +EHAV DPEE+A M+  SI NST RRKLGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQ+ PLWI+F RDM I LKQELIMNS+KTIDGRGVNVHIANGACITIQFI++VIIHG+HIHDC+PTGNAMVR+SPSHFGWR+MADGD ISIFGSSH+W+DHNSLSNCADGLVDAVMGSTAIT+SNN+                           + H  E L                           GG  N + N     +       AK VTKRV+T A QWK WNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMVG+ITSG+GVL CR+GH C
Sbjct:   58 EVEFFNEHAVDDPEEVASMVEMSIQNSTARRKLGYFSCGTGNPIDDCWRCDPNWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIRLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGVHIHDCKPTGNAMVRNSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPANTFAKEVTKRVDTAASQWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSGSGVLLCRRGHQC 447
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BF06 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 518.079 bits (1333), Expect = 2.175e-179
Identity = 244/284 (85.92%), Postives = 265/284 (93.31%), Query Frame = 0
 
Query:    1 MAERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+ LNEHAV +P+E+ +MV+MSI NST+RR+LG+FSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGRFYVVTD GDDDPVNPRPGTLRHAVIQ+EPLWIVFKRDMVI LKQELIMNSFKTIDGRGVNVHIANGACITIQF+TNVI+HGL+IHDC+PTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLS+CADGLVDAVMGST+IT+SNN+ THHNE        VMLLGHSDSY RDK MQVTIA+NHFGEGLIQRMP
Sbjct:   52 MAARLVEVEALNEHAVDDPEEVVSMVEMSIRNSTERRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSSCADGLVDAVMGSTSITISNNYLTHHNE--------VMLLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMP 327

HSP 2 Score: 431.409 bits (1108), Expect = 2.602e-145
Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 0
 
Query:  286 VEDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNE-LLGGHENA 529
            VE E L+EHAV DPEE+  M+  SI NST+RR+LG+ SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQ EPLWI+F RDM I LKQELIMNS+KTIDGRGVNVHIANGACITIQFI++VIIHGLHIHDC+PTGNAMVRSSPSHFGWR+MADGDAISIFGSSHVWVDHNSLS+CADGLVDAVMGST+IT+SNN+ THHNE +L GH ++
Sbjct:   57 VEVEALNEHAVDDPEEVVSMVEMSIRNSTERRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSSCADGLVDAVMGSTSITISNNYLTHHNEVMLLGHSDS 302
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WWA5 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 521.161 bits (1341), Expect = 5.284e-179
Identity = 246/285 (86.32%), Postives = 266/285 (93.33%), Query Frame = 0
 
Query:    1 MAERVNEVQG-LNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+  L EHAV +P+EIA+MV MSI NST+RRKLG+FSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGR+YVVTDS DDDPVNPRPGTLRHAVIQD+PLWIVFKRDMVITLKQELIMNSFKTID RGVNVHIAN ACITIQFVTN+I+HGL+IHDC+PTGNAMVRSSPSH+GWRTMADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY+RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   56 MAARLEEVEAALAEHAVDDPEEIASMVAMSIKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMP 332

HSP 2 Score: 473.011 bits (1216), Expect = 4.588e-160
Identity = 256/405 (63.21%), Postives = 289/405 (71.36%), Query Frame = 0
 
Query:  279 LIQRMPSVEDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVS-----------------------------------------------------NNFFTH-HNELLGGHENASDNC--------LQPFWRGSCAENAKVTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            +  R+  VE   L+EHAV DPEEIA M+  SI NST+RRKLG+ SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGR+YVVTD  DDDPVNPRPGTLRHAVIQ++PLWI+F RDM ITLKQELIMNS+KTID RGVNVHIAN ACITIQF++++IIHGLHIHDC+PTGNAMVRSSPSH+GWR+MADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+S                                                     NN +TH     +GG  + + N         L PF +       +VTKRV T   QWKGWNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMV T+TSGAGVL+CR+G  C
Sbjct:   56 MAARLEEVE-AALAEHAVDDPEEIASMVAMSIKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPLNPFAK-------EVTKRVETAEYQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVATMTSGAGVLDCRRGRTC 452
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WMT1 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 520.776 bits (1340), Expect = 9.616e-179
Identity = 246/285 (86.32%), Postives = 267/285 (93.68%), Query Frame = 0
 
Query:    1 MAERVNEVQG-LNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+  L E+AV +P+EIA+MV MSINNST+RRKLG+FSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGR+YVVTDS DDDPVNPRPGTLRHAVIQD+PLWIVFKRDMVITLKQELIMNSFKTID RGVNVHIAN ACITIQFVTN+I+HGL+IHDC+PTGNAMVRSSPSH+GWRTMADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY+RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   56 MAARLEEVEAALAENAVDDPEEIASMVAMSINNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMP 332

HSP 2 Score: 469.544 bits (1207), Expect = 1.193e-158
Identity = 254/405 (62.72%), Postives = 289/405 (71.36%), Query Frame = 0
 
Query:  279 LIQRMPSVEDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVS-----------------------------------------------------NNFFTH-HNELLGGHENASDNC--------LQPFWRGSCAENAKVTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            +  R+  VE   L+E+AV DPEEIA M+  SI NST+RRKLG+ SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGR+YVVTD  DDDPVNPRPGTLRHAVIQ++PLWI+F RDM ITLKQELIMNS+KTID RGVNVHIAN ACITIQF++++IIHGLHIHDC+PTGNAMVRSSPSH+GWR+MADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+S                                                     NN +TH     +GG  + + N         L PF +       +VTKRV T   QWKGWNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMV ++TSGAGVL+CR+G  C
Sbjct:   56 MAARLEEVE-AALAENAVDDPEEIASMVAMSINNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPLNPFAK-------EVTKRVETAESQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVASMTSGAGVLDCRRGRTC 452
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TTV1 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 520.39 bits (1339), Expect = 9.828e-179
Identity = 246/285 (86.32%), Postives = 266/285 (93.33%), Query Frame = 0
 
Query:    1 MAERVNEVQG-LNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
            MA R+ EV+  L E+AV +P+EIA+MV MSI NST+RRKLG+FSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGR+YVVTDS DDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTID RGVNVHIAN ACITIQFVTN+I+HGL+IHDC+PTGNAMVRSSPSH+GWRTMADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY+RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   56 MAARLEEVEAALAENAVDDPEEIASMVAMSIKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMP 332

HSP 2 Score: 471.47 bits (1212), Expect = 1.653e-159
Identity = 255/405 (62.96%), Postives = 289/405 (71.36%), Query Frame = 0
 
Query:  279 LIQRMPSVEDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVS-----------------------------------------------------NNFFTH-HNELLGGHENASDNC--------LQPFWRGSCAENAKVTKRVNTNADQWKGWNWRSEGDLFLNEAYFVPSGSRASASYARASSMPAKSSSMVGTITSGAGVLNCRKGHPC 620
            +  R+  VE   L+E+AV DPEEIA M+  SI NST+RRKLG+ SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGR+YVVTD  DDDPVNPRPGTLRHAVIQ+EPLWI+F RDM ITLKQELIMNS+KTID RGVNVHIAN ACITIQF++++IIHGLHIHDC+PTGNAMVRSSPSH+GWR+MADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+S                                                     NN +TH     +GG  + + N         L PF +       +VTKRV T   QWKGWNWRSEGDL LN AYF PSG+ ASASYARASS+ AKSSSMV ++TSGAGVL+CR+G  C
Sbjct:   56 MAARLEEVE-AALAENAVDDPEEIASMVAMSIKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANRACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPLNPFAK-------EVTKRVETAESQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVASMTSGAGVLSCRRGRTC 452
[Close]
BLAST of DCAR_002272 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251SFS4 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 519.62 bits (1337), Expect = 1.810e-178
Identity = 243/284 (85.56%), Postives = 264/284 (92.96%), Query Frame = 0
 
Query:    1 MAERVNEVQGLNEHAVANPDEIAAMVDMSINNSTKRRKLGYFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNEELTCSVNQVMLLGHSDSYMRDKQMQVTIAFNHFGEGLIQRMP 284
             A R  E + LNE+AV +P+E+ +MV+MS+ NST+RRKLGYFSCGTGNPIDDCWRCDPNWQ+NRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDD+PVNPRPGTLRHAVIQDEPLWIVFKRDMVI LKQELIMNSFKTID RGVNVHIANGACITIQF+TNVI+HGL+IHDC+PTGNA+VRSSPSH+GWRTMADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE        VMLLGHSDSY RDKQMQVTIA+NHFGEGLIQRMP
Sbjct:   53 FAAREKESEILNENAVQDPEEVVSMVEMSVKNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNALVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNE--------VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMP 328

HSP 2 Score: 439.499 bits (1129), Expect = 5.542e-147
Identity = 233/390 (59.74%), Postives = 268/390 (68.72%), Query Frame = 0
 
Query:  287 EDEGLSEHAVGDPEEIAHMLHTSILNSTDRRKLGY-SCATGNPIDDCWRCDPNWFINRKRLAGCGVGFGRDAIGGRDGRFYVVTDPGDDDPVNPRPGTLRHAVIQNEPLWIIFNRDMGITLKQELIMNSYKTIDGRGVNVHIANGACITIQFISHVIIHGLHIHDCRPTGNAMVRSSPSHFGWRSMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITVSNNFFTHHNE-LLGGHENA--SDNCLQP------FWRGSCAENAKVT----KRVNTNADQWKGWNWRSEGDLFLNEA---YFVPSGSRASASYARASS---------------------------------------MPAKSSSMVGTITSGAGVLNCRKGHPC 620
            E E L+E+AV DPEE+  M+  S+ NST+RRKLGY SC TGNPIDDCWRCDPNW  NRKRLA CG+GFGR+AIGGRDGRFYVVTD GDD+PVNPRPGTLRHAVIQ+EPLWI+F RDM I LKQELIMNS+KTID RGVNVHIANGACITIQFI++VIIHGLHIHDC+PTGNA+VRSSPSH+GWR+MADGDAISIFGSSH+WVDHNSLSNCADGLVDAVMGSTAIT+SNN+FTHHNE +L GH ++   D  +Q       F  G      +        VN +   W+ +     G+  +N     Y  P+   A     R  +                                       + AKSSSMVGTITSGAG L CR+G  C
Sbjct:   59 ESEILNENAVQDPEEVVSMVEMSVKNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNALVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYLAPNNPFAKEVTKRVDTASSQWHGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGTITSGAGALVCRRGRQC 448
Match NameStatsDescription
A0A2P6QRX6E-Value: 1.667e-149, PID: 88.15Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A5B6ZL49E-Value: 2.788e-146, PID: 87.32Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A7J7GQW0E-Value: 1.027e-180, PID: 86.93Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A4S4CYF6E-Value: 1.243e-180, PID: 86.93Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A5J5C317E-Value: 9.656e-180, PID: 86.27Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A5B7BF06E-Value: 2.175e-179, PID: 85.92Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A6P6WWA5E-Value: 5.284e-179, PID: 86.32Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A6P6WMT1E-Value: 9.616e-179, PID: 86.32Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A068TTV1E-Value: 9.828e-179, PID: 86.32Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A251SFS4E-Value: 1.810e-178, PID: 85.56Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.