MFVLSNYNNQNKPRASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDT
TERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGT
AIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLR
SVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRT
HDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTLRFNDG
IDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQ
LLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGV
KPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKI
AVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEA
IEQRRHRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVP
TIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLL
TELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTV
ENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGF
AIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRD
VDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQN
CSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQ
ASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVH
AESVVAASHTDRGHFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSEEVPF
KAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPL
AVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHR
PGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSRGEKTV
R*
| Relationships |
|---|
| The polypeptide, DCAR_001431, derives from mRNA, DCAR_001431. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A4S4DJU0 ((Uncharacterized protein {ECO:0000313|EMBL:THG03129.1}))
HSP 1 Score: 1120.53 bits (2897), Expect = 0.000e+0
Identity = 603/1051 (57.37%), Postives = 746/1051 (70.98%), Query Frame = 0
Query: 12 KPRASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTL------RFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRRH-RIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQR----HSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVV----AASHTDRGHFSDIGNTGSLRESS---FNSSSKVLGPK-----GLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLEC 1039
+P AS ++ + L SAI+RIADKLR+LG+ + ++ N + + PG+IF+PLP LPKYRVGHT D SWS+PENPVP+PG GTAI+R+H R +++ K K + + + APT+AELT++ ELRRLR++GI LK++LKVGKAG+TEGIVNGIH+RWR++ELVKI C+DI RLNMKRTH LLE+KTGGLVIWRSGSN+I+YRGA+YKYPYFL+++N +N + + G+ E CSS + SA SNK Q PLIQGVGSPN VRFQLPGE QL+EE D LLDGLGPRFTDWWGYDPLPVDADLL A+V GYRKPFRLLPYGVKP LTNDEMT LKRLGRPLPCHF LGRNRKLQGLAASI+KLWE CEIAKIAVKRGVQNTN+EL+A ELKWLTGG LLSRD+E +VLYRGKDFLPA VS AIE+RR I K+ D +S M +Q + + E I D+KRK+ SE+R+L+ AV +T +KL +A KK++AE LL EL+KEE Q +EIDKEGI+EEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVK+ICG RSI+ VH AR LEAES GIL+AVER+SKG+AIIVYRGKNY+RP LRPQTLLNKREAMKRSIEAQRRESLKLHVLKL R++DEL+ +L++ ++ NMQ K+ Q E + +++ ++ + + S C + NVE +D GA +S + ND +D+ + S D+L S ED D+ I SEP V ++++ + +NG+ ES + S + +R+ + F S K GP+ +E+ S VPF+A RLSNRERL LRKQAL +KKRPVLAVG+SNIV+GVAKTIKTHFQK+PLA+VN+KGRAKGTS+QEVV +LE+AT VLVSQEPSKIIL+RGWGAG+K PGQ++ T + T G+E +++ VISPEL++AI+LEC
Sbjct: 47 RPYASASSAATRTLPQSAIKRIADKLRSLGYVEEEQDSKQTLNSHSSNDLPGEIFIPLPNRLPKYRVGHTIDTSWSSPENPVPEPGLGTAIQRFHGFRRKVIMEKVKEREMKKGEARD---APTVAELTMNKGELRRLRTIGIGLKKKLKVGKAGITEGIVNGIHERWRNSELVKIVCEDICRLNMKRTHGLLEKKTGGLVIWRSGSNIILYRGANYKYPYFLSDNNSTNDTSAGTSRSSSMDSGVHVREESCSSGTDYLNSAGRHSSNKMAQPPLIQGVGSPNRVRFQLPGEAQLVEEADSLLDGLGPRFTDWWGYDPLPVDADLLAAIVPGYRKPFRLLPYGVKPKLTNDEMTILKRLGRPLPCHFVLGRNRKLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSELMAGELKWLTGGTLLSRDKEIIVLYRGKDFLPAAVSSAIEERRKCGIPMEKHRTDFSSSVMTIQ---------ECQDECDGIS---------------DQKRKLVSEQRKLRSTEAAVKKTSTKLQMAFEKKAKAEKLLAELDKEETPQEAEIDKEGITEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVICGGRSIEAVHGIARALEAESNGILVAVERVSKGYAIIVYRGKNYQRPDCLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLGRNIDELKLQLSKGKETNNMQSDKESNFQLVKEQEAEKKRLAEYTRSDTDLFTNDCSTSVTPNCTEVNVE-----------ARDRCGANSSSFDPNDDIDALSSSPETSQRDILI-FSKEDK----DEFKITESEPLADAVCKESNVIMGINGQGGDVESATCPDDSMSQDQTSSLPVVNVEPHVRDKAVIPFVESPKS-GPEPSVHSTIENVSSRVPFRAVRLSNRERLFLRKQALRMKKRPVLAVGRSNIVTGVAKTIKTHFQKYPLAIVNVKGRAKGTSVQEVVFKLEQATDGVLVSQEPSKIILYRGWGAGEK--PGQTVVKNTKDVWKTSAGREGEIRPVISPELVSAIRLEC 1051
Match: A0A5J5AJC3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8530278.1}))
HSP 1 Score: 1106.28 bits (2860), Expect = 0.000e+0
Identity = 610/1049 (58.15%), Postives = 753/1049 (71.78%), Query Frame = 0
Query: 25 LAHSAIQRIADKLRTLGFDDNIKNDTTER-NKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSN----CAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTLR------FNDGIDGENEICSSHIGGVRSAVSPLSNKTVQA---PLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKL----DQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAAS-----------HTDRG--HFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGL 1041
L SAIQRI+DKLR+LG+ D+ K D E + I + SPGQIF+PLP LPKYRVGHT DPSWSTPENPVP+PG+G IR +H+LR ++ K+K + PTLAELTL EELRRLR++GI LK++LKVGKAG+TEGIVNGIH+RWR TELVK+ C+D+ R+NMKRTHDLLERKTGGLVIWRSGSN+++YRG +YKYPYFL+++N +N + + + E SS + + SA SN QA PLIQGVGSP VRFQLPGE QL EE D LLDGLGPRFTDWWGYDPLP+DADLLPAVV GYR+PFRLLPYGVKP LTNDEMT LKRLGRPLPCHF LGRNRKLQGLAASI+KLWE CEIAKIAVKRGVQNTN+EL+A+ELK LTGG LLSRD+EF+V YRGKDFLPA V IE+RR I GVK+ D +S + +Q HK TV E G D + + D+K + S++R+L RT +KL +AL KK+RAE LL ELEKEEI Q E+DKEGI+EEERYMLRKVGL+MKPFLLLGRRGVF GTVENMHLHWKYRELVKIICG RSI+EVH ARTLEAESGGIL+AVER+SKG+AIIVYRGKNYKRPASLRP+TLL+KREAMKRSIEAQR ESLKLHVLKL R++DEL+ +LA+D+ +++ +K ++ +K+ ++R +E Y + CS N A ++EN+E ++ GA TS N+N+ +DSS + L+ + +D+ +S++ KD DK + +PS ++ E+T+ + +M E ES H + HF + ES N S++ + +E+ +PFKA RLSNR+RLLLRKQAL +KKRPVLAVGKSNIV+GVAK IK HF+KHPLA+VN+KGRAKGTS+QEVV +LE+ TGAVLVSQEPSK+IL+RGWGAG+ P Q++E + +T G+E+ ++VISPEL++AI+LECGL
Sbjct: 64 LPQSAIQRISDKLRSLGYVDDDKEDPKETLSPITNRTSPGQIFIPLPKDLPKYRVGHTIDPSWSTPENPVPEPGSGKHIRTFHELRREVWKEKEKEKEKEKEKVKRKGEERAIVPTLAELTLPEEELRRLRAIGIGLKKKLKVGKAGITEGIVNGIHERWRRTELVKLVCEDLCRMNMKRTHDLLERKTGGLVIWRSGSNIVLYRGVNYKYPYFLSDNNSTNDTSATTSPDSCMDRRVHVTRESSSSGMDDLNSAGQIFSNNVAQATQPPLIQGVGSPIRVRFQLPGEAQLAEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGVKPKLTNDEMTILKRLGRPLPCHFVLGRNRKLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSELMAEELKLLTGGTLLSRDKEFIVFYRGKDFLPAAVCSVIEERRGCGIHGVKHRTDYSSPVVTMQGHKLGTV------ECGSEDEH---------DRTNDQKPNIISDQRKLWSTEATFKRTSTKLEMALDKKARAENLLAELEKEEIPQQPELDKEGITEEERYMLRKVGLRMKPFLLLGRRGVFAGTVENMHLHWKYRELVKIICGARSIEEVHRIARTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPRTLLSKREAMKRSIEAQRCESLKLHVLKLSRNIDELRLQLAKDKDTNSIKESKLQLVKEQETNKMQFADNKRSVTDLENNYLS---CSVNPAFNEENIE-----------ARERHGADSTSFNSNNDMDSSSESLETTQQDIFRDISSKYKDKDEDKFDLTEPKPSSELIFEETNVVMDMIPEGGDFESTTCPDNLRSQSQASFLHIVKAEPHFYENKTMAPSVESPKN-ESELSTQRAVENGFNGMPFKAARLSNRDRLLLRKQALKMKKRPVLAVGKSNIVTGVAKAIKAHFEKHPLAIVNVKGRAKGTSVQEVVSKLEQVTGAVLVSQEPSKVILYRGWGAGED--PVQTVEKNKRDERNTSAGREDGPRSVISPELMSAIRLECGL 1080
Match: A0A5N6QVK0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8021597.1}))
HSP 1 Score: 1098.96 bits (2841), Expect = 0.000e+0
Identity = 591/1048 (56.39%), Postives = 736/1048 (70.23%), Query Frame = 0
Query: 15 ASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNED---NDSNKLTL---RFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEK-TDRLKNMNGEVVHAESVVAASHTDRGHFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSEEVPF----------KAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDK--HRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLE 1042
AS + T L SAIQRIA+KLRTLGF ++ + +SA G+IF+PLP LP RVGHT D SWSTPENPVP+PGTGTAI RYH LR ++++ K + + + APTLAEL+LS EELRRLR +GI+ K++LK+GKAGVTEGIVNGIH+RWR TE+VKI C+D+ RLNMKRTHDLLERKTGGLV+WRSGS +++YRGA+YKYPYFL+++ ND++ L +DG + E SS I V+SA + + K Q LIQGVG PN VRFQLPGE QL EE D LL+GLGPRFTDWWGYDPLPVDADLLPA+V GYR+PFRLLPYGVKPILTNDEMT LKRLGRPLPCHF LGRNR LQGLA SI+KLWE CEIAKIAVKRGVQNTN+E++A+ELK LTGG LLSRD EF+VLYRGKDFLP VS AIE+RR H I G K +++ A Q K T + +ES + +N +E+R + S+ER+L+ + RT KLS+AL KK+ AE LL ELEK E+ Q EIDKEGI+EEERYMLRKV L+MK FLL+GRRGVFDGT+ENMHLHWKYRELVKII ER+ + VH ARTLEAESGGIL+ VER++KG+AII+YRGKNYKRPASLRPQTLL+KREAMKRSIEAQRR+SLKLHVLKL +++D+L+ +L +DE+ N Q A +L + ED +D + +A ++ ACH+EN E + H+ VK NDG +D+S QA+ +D+L GL + + DK ++G S + E + K+MNGEV A V+ S D + ++ +N+ + K + SE VP +A L+N+ERLLLRKQAL +KKRPVLAVG++N+V+GVAKTI HF+KHPLA+VN+KGRAKGTS+QEVV +LE+ATGAVLVSQEPSK+IL+RGWGAG+K H ++ + + G+ PT +SPEL+ AI+LECGL+
Sbjct: 46 ASDSQTQTQTLPKSAIQRIAEKLRTLGFTEDTPSPGPGSGPNENSA--GEIFIPLPNRLPSRRVGHTMDTSWSTPENPVPEPGTGTAIARYHTLRREVMVQKVMDRKERKGKGEE--IAPTLAELSLSEEELRRLRRIGIETKKKLKIGKAGVTEGIVNGIHERWRQTEVVKIVCEDLCRLNMKRTHDLLERKTGGLVVWRSGSKIVLYRGANYKYPYFLSDEVLENDNSADALLDSNMDDGGHNKKESYSSSINDVKSAATCPTKKMSQPKLIQGVGMPNRVRFQLPGEAQLAEEADRLLEGLGPRFTDWWGYDPLPVDADLLPAIVPGYRRPFRLLPYGVKPILTNDEMTILKRLGRPLPCHFVLGRNRNLQGLAISIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGSLLSRDSEFIVLYRGKDFLPPAVSSAIEERRKHVIHGEKERTKHSTSATTTQELKFGT--TECGSESELDGAN-------------EEERGLLSKERKLRSTEATIKRTSVKLSMALEKKAEAEKLLAELEKAEVTQAPEIDKEGITEEERYMLRKVALRMKAFLLMGRRGVFDGTIENMHLHWKYRELVKIISKERNFEAVHKEARTLEAESGGILVGVERVNKGYAIIMYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRKSLKLHVLKLTKNIDDLKLQLVKDEEANNKQSADELRQKFVKED-MDSVQPVEYLSSHAEFKSGPAIPACHEENTEAKVKRKAHSTFVKLNDG-----------MDASINSPQATQQDILIGLPSTPEADVTDK--VDGGFSSESVRKESHANLFKDMNGEVGTA---VSTSCPDNFMSEGMSCPAVVQHCVYNNKAIASSVKSAKINSEPVPVTAENGSKMPRRALHLTNKERLLLRKQALQMKKRPVLAVGRTNMVNGVAKTIMAHFKKHPLAIVNVKGRAKGTSVQEVVFQLEQATGAVLVSQEPSKVILYRGWGAGEKPLHPEKKNASDSGKKGGTQPT---------VSPELLAAIRLECGLQ 1048
Match: A0A7N2L0K2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p078191:mrna}))
HSP 1 Score: 1096.26 bits (2834), Expect = 0.000e+0
Identity = 596/1052 (56.65%), Postives = 744/1052 (70.72%), Query Frame = 0
Query: 18 NTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFL------NEDNDSNKLTLRFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFY---AAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAASHTDRGHFSDIGNTGSLRESSFNS-------SSKV---LGPKGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSRGEKT 1049
+T+ L +SAIQRIA KLR+LGF ++ +N N S + G+IF+PLP LPK+RVGHT D SWSTPENPVP PGTG+AI +YHQLR +++ KQK ++ APTLAEL+LS ELRRLR +GI+ +++LKVGKAG+TEGIVNGIH+RWR E+VKI+C+D+ R+NMKRTH+LLERKTGGLV+WRSGS +++YRGA+YKYPYFL NE + L +DG E E CSS I GV++A + S + Q LIQGVG PN VRFQLPGE +L EE D LL+GLGPRFTDWWGYDPLPVDADLLPA+V GYRKPFRLLPYGVK +LTNDEMT LKRLGRPLPCHFALGRNR LQGLAASI+KLWE CEIAKIAVKRGVQNTN+E++A+ELK LTGG+LLSRD EF LYRGKDFLP VS AIE RR + I G K ++ VQ +P+ + +ES N + +R + E+R+L+ A+ RT KLS+AL KK+RAE LL ELEKEEI Q SEIDKEGI++EERYMLRKV L+MKPFLL+GRRGVFDGTVENMHLHWKYRELVKII RSI+ VH ARTLEAESGGIL+AVER+SKG+AIIVYRGKNY RPASLRPQTLLNKREA+KRSIEAQRR+SLKLHVL L +++D+L+ +L +D++ N+ A L + ED + + +E + ++P + S ACH+EN N++ +D GA+LT +N ND D+S + QA+ +D + GLS+ DG I G V K+MNGEV E+ V+ D + G++ ++ +++ S+K+ L P +E+ S E+P KA LSN+ERLLLRKQAL +K RPVLAVG++NIVSGVAK I HF+KHPLA+VN+KGRAKGTS+QEVV +LE+ATGAVLVSQEPSK+IL+RGWG D PG + + I+ G+E + +SPEL+ AI++ECGL+ E+T
Sbjct: 49 STSDTQTLPNSAIQRIAHKLRSLGFAEDPQNPNP-----NPSPNAGEIFIPLPHQLPKHRVGHTLDASWSTPENPVPVPGTGSAITKYHQLRREVI--KQKVMHKKEKREEKK--APTLAELSLSEAELRRLRRLGIETRKKLKVGKAGITEGIVNGIHERWRRYEVVKIECEDLCRMNMKRTHELLERKTGGLVVWRSGSKIVLYRGANYKYPYFLSDKILTNETMTDDILDPHIDDGEQNETESCSSSIIGVKAAATSPSKEISQPKLIQGVGMPNRVRFQLPGEAELAEEADRLLEGLGPRFTDWWGYDPLPVDADLLPAIVPGYRKPFRLLPYGVKSVLTNDEMTTLKRLGRPLPCHFALGRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGILLSRDSEFFALYRGKDFLPPAVSSAIEVRRKYGIHGEKERTRCSTSVTTVQ--EPKLDTAECSSESEPDGGN-------------NVERGLLLEQRKLRSTEAAIKRTSIKLSMALEKKARAEKLLAELEKEEIPQQSEIDKEGITKEERYMLRKVALRMKPFLLMGRRGVFDGTVENMHLHWKYRELVKIISKTRSIEAVHEEARTLEAESGGILVAVERVSKGYAIIVYRGKNYTRPASLRPQTLLNKREALKRSIEAQRRKSLKLHVLSLTKNIDDLKLQLDKDKEANNVLPADALNYKLVKEDMNNMQATECLRSHVEHNSSPLSHSVIPACHEEN----------NVEAEDKHGAQLTLMNLNDGTDASIYNPQATQQDKVLGLSSTFK-GDGTGKIEAGFSSELVSKELHAKLCKDMNGEV---ETAVSTPCPDNFMSEETGSSAVVQHCVYDNNAIEPAKSAKIDLKLVPIAVENGS-EMPHKAVLLSNKERLLLRKQALKMKTRPVLAVGRNNIVSGVAKAIMVHFKKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKVILYRGWGVRDI--PGHTEKKNVID-----VGKEGGTRPTVSPELLAAIRMECGLQGHVKEET 1054
Match: A0A7N2N9F5 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL93p0205_0125:mrna}))
HSP 1 Score: 1094.72 bits (2830), Expect = 0.000e+0
Identity = 595/1052 (56.56%), Postives = 744/1052 (70.72%), Query Frame = 0
Query: 18 NTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFL------NEDNDSNKLTLRFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFY---AAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAASHTDRGHFSDIGNTGSLRESSFNS-------SSKV---LGPKGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSRGEKT 1049
+T+ L +SAIQRIA KLR+LGF ++ +N N S + G+IF+PLP LPK+RVGHT D SWSTPENPVP PGTG+AI +YHQLR +++ KQK ++ APTLAEL+LS ELRRLR +GI+ +++LKVGKAG+TEGIVNGIH+RWR E+VKI+C+D+ R+NMKRTH+LLERKTGGLV+WRSGS +++YRGA+YKYPYFL NE + L +DG E + CSS I GV++A + S + Q LIQGVG PN VRFQLPGE +L EE D LL+GLGPRFTDWWGYDPLPVDADLLPA+V GYRKPFRLLPYGVK +LTNDEMT LKRLGRPLPCHFALGRNR LQGLAASI+KLWE CEIAKIAVKRGVQNTN+E++A+ELK LTGG+LLSRD EF LYRGKDFLP VS AIE RR + I G K ++ VQ +P+ + +ES N + +R + E+R+L+ A+ RT KLS+AL KK+RAE LL ELEKEEI Q SEIDKEGI++EERYMLRKV L+MKPFLL+GRRGVFDGTVENMHLHWKYRELVKII RSI+ VH ARTLEAESGGIL+AVER+SKG+AIIVYRGKNY RPASLRPQTLLNKREA+KRSIEAQRR+SLKLHVL L +++D+L+ +L +D++ N+ A L + ED + + +E + ++P + S ACH+EN N++ +D GA+LT +N ND D+S + QA+ +D + GLS+ DG I G V K+MNGEV E+ V+ D + G++ ++ +++ S+K+ L P +E+ S E+P KA LSN+ERLLLRKQAL +K RPVLAVG++NIVSGVAK I HF+KHPLA+VN+KGRAKGTS+QEVV +LE+ATGAVLVSQEPSK+IL+RGWG D PG + + I+ G+E + +SPEL+ AI++ECGL+ E+T
Sbjct: 49 STSDTHTLPNSAIQRIAHKLRSLGFAEDPQNPNP-----NPSPNAGEIFIPLPHQLPKHRVGHTLDASWSTPENPVPVPGTGSAITKYHQLRREVI--KQKVMHKKEKREEKK--APTLAELSLSEAELRRLRRLGIETRKKLKVGKAGITEGIVNGIHERWRRYEVVKIECEDLCRMNMKRTHELLERKTGGLVVWRSGSKIVLYRGANYKYPYFLSDKILTNETMTDDILDPHIDDGEQNETDSCSSSIIGVKAAATSPSKEISQPKLIQGVGMPNRVRFQLPGEAELAEEADRLLEGLGPRFTDWWGYDPLPVDADLLPAIVPGYRKPFRLLPYGVKSVLTNDEMTTLKRLGRPLPCHFALGRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGILLSRDSEFFALYRGKDFLPPAVSSAIEVRRKYGIHGEKERTRCSTSVTTVQ--EPKLDTAECSSESEPDGGN-------------NVERGLLLEQRKLRSTEAAIKRTSIKLSMALEKKARAEKLLAELEKEEIPQQSEIDKEGITKEERYMLRKVALRMKPFLLMGRRGVFDGTVENMHLHWKYRELVKIISKTRSIEAVHEEARTLEAESGGILVAVERVSKGYAIIVYRGKNYTRPASLRPQTLLNKREALKRSIEAQRRKSLKLHVLSLTKNIDDLKLQLDKDKEANNVLPADALNYKLVKEDMNNMQATECLRSHVEHNSSPLSHSVIPACHEEN----------NVEAEDKHGAQLTLMNLNDGTDASIYNPQATQQDKVLGLSSTFK-GDGTGKIEAGFSSELVNKELHAKLCKDMNGEV---ETAVSTPCPDNFMSEETGSSAVVQHCVYDNNAIEPAKSAKIDLKLVPIAVENGS-EMPHKAVLLSNKERLLLRKQALKMKTRPVLAVGRNNIVSGVAKAIMVHFKKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKVILYRGWGVRDI--PGHTEKKNVID-----VGKEGGTRPTVSPELLAAIRMECGLQGHVKEET 1054
Match: A0A6I9UUC3 ((CRM-domain containing factor CFM2, chloroplastic {ECO:0000313|RefSeq:XP_011098529.1}))
HSP 1 Score: 1088.17 bits (2813), Expect = 0.000e+0
Identity = 590/1064 (55.45%), Postives = 736/1064 (69.17%), Query Frame = 0
Query: 2 FVLSNYNNQN---KP---RASLNTTSA----PLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNED--NDSNK---LTLRFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRRHRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNL-KVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAASHTDRGHFSDI----GNTGSLRESSFNSSSKVLGP---KGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLE 1042
F + +Y+ N KP RAS++ ++ L SAI RIA+KLR+LG+ + ND + SPG+IF+P PT LPK+RVGHT DPSWSTPENP+P PG+G AIRR+H+LR +L ++K + + AP+LAELTL +ELRRLRS+GI LK+ LK GKAG+TEGIVNGIH+RWR +ELVKI C+DI RLNMKRTH+LLERKTGGLVIWRSGSN+I+YRG+DYKYPYFL ++ NDS+ + + GI G+ + S V S PLIQGVG PN VRFQLPGE +L +E D LL+GLGPRF+DWWG DPLPVDADLLPAVV GY++PFRLLPYGVKP LTNDEMT L+RLGRPLPCHFALGRNRKLQGLAA+I+KLWE CEIAKIA+KRGVQNTN+EL+A+ELKWLTGG LLSRD EF+ YRGKDFLPA VS AIE+RR + + NS +D + K T + E DE+ SEER+LKF + A+ RT +KLS+ALAKK+RAE LL ELEKEE+ QP EIDKEGI+EEERYMLRKVGL+MKPFLLLGRRGVFDGT+ENMHLHWKYRELVK+ G R+I E+H ARTLEAESGGIL+AVER+SKG+AIIVYRGKNY RPASLRPQTLL+KREAM+RS+EAQRRESLKLHVLKL R++DE++ ++A++ +MQL KDL L +DQ++S+ + + + A HQ+ Y+ + +D+ G TS + D + +++ +D +S VK E P + ++T L ++N + H E + DR S +TG S+ + L P K L + + +PF+A +LSNRERLLLRKQAL +KK PVLAVGKSN+V+GVAK IK HF+KHPLA+VNIKGRAKGTS++EV+ LE+ATGAVLVSQEPSK+IL+RGWG+G + NK +++ S E K + ISPELI+AI+LECGL+
Sbjct: 25 FGIPSYHYPNFLFKPFRRRASISVAASGADSQTLPASAIHRIAEKLRSLGYVEESSNDNDDETLPPGPNSPGEIFIPFPTRLPKFRVGHTLDPSWSTPENPIPDPGSGNAIRRFHELRRGVLEEEEKERIRKRREGKKES-APSLAELTLPKDELRRLRSIGIGLKKELKAGKAGITEGIVNGIHERWRRSELVKITCEDICRLNMKRTHELLERKTGGLVIWRSGSNIILYRGSDYKYPYFLTDELSNDSSSEESPNIDKDQGIVGKTDEQSPVTDAVESRRLNSGTHISHLPLIQGVGLPNRVRFQLPGEAELADEVDTLLEGLGPRFSDWWGCDPLPVDADLLPAVVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFALGRNRKLQGLAAAIVKLWEKCEIAKIAIKRGVQNTNSELMAEELKWLTGGTLLSRDNEFIAFYRGKDFLPAAVSSAIEERRKYGIDMSKTRTGNSPILDAKEIKHGTKEYAAEAE-------------------HDEECNQKSEERKLKFSQAAMERTSTKLSMALAKKARAEKLLAELEKEEMPQPPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKVCIGRRNIKEIHEIARTLEAESGGILVAVERVSKGYAIIVYRGKNYTRPASLRPQTLLSKREAMRRSLEAQRRESLKLHVLKLSRNIDEMKLQMAKEGDPNDMQLTKDLELGF-----VDQKNSK---------NHYNKDKALHQDPESAHQSYFGELANEARDSPGTDDTSKDPEDLMHTAKDSEDIVQQDSSGYVSLHSAVKGNYLFETTEEELQPRSLPQETKGLLSINEQSGHIELSSSLRFQDRTSSSTTTCIQSHTGGRDSSTGGFQNVELEPSVKKALSEATAAMPFRALQLSNRERLLLRKQALKMKKLPVLAVGKSNVVTGVAKAIKAHFEKHPLAIVNIKGRAKGTSVREVIYNLEQATGAVLVSQEPSKVILYRGWGSGVEPDQASGKVNKDLKNDSARG--EAKARQHISPELISAIRLECGLK 1052
Match: A0A5B6Z5U5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA39520.1}))
HSP 1 Score: 1082.78 bits (2799), Expect = 0.000e+0
Identity = 598/1074 (55.68%), Postives = 744/1074 (69.27%), Query Frame = 0
Query: 9 NQNKPRASLN--TTSAP---LLAHSAIQRIADKLRTLGFDDNIKNDTTER--NKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTLR------FNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQ-RRHRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKL-------DQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGE-----------VVHAESVVAASHTDRG--HFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSRGEK 1048
N KP SL T+SA L SAI+RIADKLR+LG+ D+ K D+++ N ++ SPG+IF+PL HLP YRV +T DPSWSTPENPVP PG+G AI+R+HQLR + K K + PTLAELT+ +ELRRLR++ I L + LKVGKAG+ E +VNGIH+RWR E+VKI C+D+ R NMKRTH+LLERKTGGLVIWRSGSN+I+YRGA+YKYPY +++N +N + + G+ E +S + V SA LS Q PLIQGVGSP VRFQLPGE QL EE D LLDGLGPRFTDWWGYDPLP+DADLLPAV GY++PFRLLPYG+KP LTNDEMT LKRLGRPLPCHF LGRNRKLQGLAASI+KLWE CEIAKIAVKRGVQNTN+EL+A+ELK LTGG LLSRD+EF+V YRGKDFLPA VS AIE+ R+ I GVK+ D + + Q K TV E G D + + + D K + +E+ + + RT +KL +ALAKK+RAE LL ELEKEEI + EIDKEGI+EEERYMLRKVGL+MKPFLLLG+RGVF GTVENMHLHWKYRELVKII G RSI+E+ ARTLEAESGGIL+A ER+SKG+AII+YRGKNYKRPA LRP+TLLNKREAMKRSIEAQRRESLKLHVLKL R++DEL+ +L +D+ +MQ AK+ Q E + ++R +E Y + CS A ++ENVE ++ GA TS N+ND +DSSR+ L+ + +++ + K+ DK + EP +V ++T + +MN E + ++S + SH + HF + ES N S + +E+ + KA RLSNR+RLLLRKQAL +KK PVLAVGKSNIV+GVAK IK HFQKHPLA+VN+KGRAKGT +QEVV +LE+ TGAVLVSQEPSK+IL+RGWGA ++ PGQ++E K + T G+E+ ++VISPEL++AI+LECGL + E+
Sbjct: 35 NPKKPFKSLRLRTSSAAATQTLPQSAIKRIADKLRSLGYVDDDKEDSSKETLNPNTNNTSPGEIFIPLRKHLPNYRVTNTIDPSWSTPENPVPAPGSGNAIQRFHQLRRVVCKEKAKRK------GEERERIPTLAELTVPEKELRRLRAIRIGLNKSLKVGKAGIVERVVNGIHERWRRAEVVKIACEDLCRNNMKRTHELLERKTGGLVIWRSGSNIILYRGANYKYPYLFSDNNPTNDSSAATSPDSCMDRGVHVTRESSTSGLDDVNSAGRNLSKNMAQPPLIQGVGSPIRVRFQLPGEAQLAEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVAPGYKRPFRLLPYGMKPKLTNDEMTILKRLGRPLPCHFVLGRNRKLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSELMAEELKLLTGGTLLSRDKEFIVFYRGKDFLPAAVSSAIEEWRKCGIHGVKHRTDYSPSIVTTQEQKLGTV------ECGSEDEH---------DRINDHKPDLIAEQTKPCSPEVVIKRTSTKLEMALAKKARAENLLAELEKEEIPEQPEIDKEGITEEERYMLRKVGLRMKPFLLLGKRGVFAGTVENMHLHWKYRELVKIISGGRSIEEIRGIARTLEAESGGILVAAERVSKGYAIIMYRGKNYKRPACLRPRTLLNKREAMKRSIEAQRRESLKLHVLKLSRNIDELRLQLTKDKDTNSMQSAKESQFQLVEEQETNKMQFSENKRSVTDLETNYLS---CSVTPAYNEENVE-----------ARERHGADSTSFNSNDDMDSSRESLETTQKEIFRDFFLKYKDKEEDKSELTEPEPLSELVFKETSVVMDMNSEGGEFESTTCPDNLRSQSQASFSHIIKAAPHFYENKTMAPSVESPKNESEPS-AQRAVENGFNGISSKAARLSNRDRLLLRKQALKMKKHPVLAVGKSNIVTGVAKAIKAHFQKHPLAIVNVKGRAKGTPVQEVVSKLEQVTGAVLVSQEPSKVILYRGWGAAEE--PGQTVEKKRRDVRKTSAGKEDGPQSVISPELMSAIRLECGLRCEQEEE 1070
Match: A0A2I4EUP9 ((CRM-domain containing factor CFM2, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_018823102.2}))
HSP 1 Score: 1076.23 bits (2782), Expect = 0.000e+0
Identity = 582/1048 (55.53%), Postives = 728/1048 (69.47%), Query Frame = 0
Query: 14 RASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDS-ASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNED---NDSNKLTL---RFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQD-LQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAASHTDRGHFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSE----------EVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLE 1042
R S + + + SAIQRIADKLR+LG + + N DS S G+IF+PLP +PK RVG+T D SWSTPENPVP+PGTG+AI RYH++R ++ KQK + + + APTLAELTL+ ELRRLR +GI+ +++LK+GKAG+TEGIVNGIH+RWRH E+VKI C+D+ R NMKRTHDLLER TGGLV+WRSGS +++YRGA+YKYPYFL+++ N+++ L +DG + E CS I GV S+++ + K Q LIQGVG PN VRFQLPGE QL E D LL+GLGPRFTDWWGYDPLPVDADLLPAVV GYR+PFRLLPYGVKPILTNDEMT LKRLGRP+ CHFALGRNR LQGLAASI+KLWE CEIAKIAVKRGVQNTN+E++A ELK LTGGVLLSRD EF VLYRGKDFLP V AIE+RR H I G K + ++ Q K ++E ++ NY E++ SE+R L+ + RT KLS+AL KK++AE LL ELE+ EI Q EIDKEGI+EEER MLRKVGL+MKPFLL+GRRG+FDGTVENMHLHWKYRELVK+I E+SI+ VH ARTLE+ESGGIL+AVER++KG+AIIVYRGKNYKRPASLRPQTLLNKREAMKRS+EAQRR+SLKLHVLKL+R++D+L+ +L ++ D+ TE + H+E + P +ACH+EN E KD GA S+N N+ VD + LQ++ +D + GLS + ++ I SE V + + NGEV A V+ S D ++ + + +FN+ +K L K ++ S+ ++P +A +LSN+ERLLLRKQAL +KKRPVLAVG+SNIV+GVAKTI HF+KHPLA+VN+KGRAKGTS+QEVV LE+ATGAVLVSQEPSK+IL+RGWGA DKH +E K + G+E + +SPEL+ AI+LECGL+
Sbjct: 52 RTSASASDTQTIPKSAIQRIADKLRSLGITEETPSSNPGLNARPDSETSAGEIFIPLPNRVPKRRVGYTIDRSWSTPENPVPEPGTGSAIARYHEVRREVF--KQKALERKDKKEKREERAPTLAELTLNENELRRLRKIGIETRKKLKIGKAGITEGIVNGIHERWRHFEVVKIVCEDLCRKNMKRTHDLLERTTGGLVVWRSGSKIVLYRGANYKYPYFLSDEILKNETSTDALPDPNMDDGGSDKMESCSPSIDGVESSITSPTKKISQPKLIQGVGRPNRVRFQLPGEAQLAEVADRLLEGLGPRFTDWWGYDPLPVDADLLPAVVPGYRRPFRLLPYGVKPILTNDEMTTLKRLGRPMACHFALGRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAAELKRLTGGVLLSRDSEFFVLYRGKDFLPLSVCSAIEERRKHVIHGEKERANCSTSVTTAQELKLGNAEGGSESE------------LDGANY---EEKGGISEQRMLRSTEAVIKRTSIKLSMALEKKAKAEKLLAELEEAEIPQAPEIDKEGITEEERNMLRKVGLRMKPFLLMGRRGIFDGTVENMHLHWKYRELVKVISKEKSIEAVHQEARTLESESGGILVAVERVNKGYAIIVYRGKNYKRPASLRPQTLLNKREAMKRSLEAQRRKSLKLHVLKLNRNIDDLKLQLVKE----------DMNSVQPTE--CSRSHAEVKYGHLSRPL----ISACHEENAE-----------AKDKHGAHSASMNFNEGVDVPINNILQSTQQDEVIGLSAMYEGDPAGRVEIESSE--SVGKETHANVFMDKNGEVGAA---VSTSFPDNFMSEGKRHSAVVEDCAFNNKAKELSDKSVKTDSKPDQITIENGSKMPRRALQLSNKERLLLRKQALKMKKRPVLAVGRSNIVTGVAKTIMAHFKKHPLAIVNVKGRAKGTSVQEVVFLLEQATGAVLVSQEPSKVILYRGWGAEDKH---GHIEKKN----AGVAGEEGATQLTVSPELLAAIRLECGLQ 1043
Match: F6HV32 ((Uncharacterized protein {ECO:0000313|EMBL:CCB58550.1}))
HSP 1 Score: 1066.99 bits (2758), Expect = 0.000e+0
Identity = 585/1037 (56.41%), Postives = 720/1037 (69.43%), Query Frame = 0
Query: 22 APLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTLRF-------NDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRR-HRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQNCSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLE--KTDRLKNMNGE---VVHAESVVAASHTDRGHFSDIGNTGSLRESSFNSSSKVLGP---KGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLE 1042
A L +AIQRIA+KLR+LG+ D ++ + + S G+IF+PLP LPK+RVGHT D SWS PENPVP+PGTG I R+H+LR ++ K ++ L +D APTLAELTL EELRRL+ +GI+++++LKVGKAG+TEGIVNGIH+RWR E+VKI+C+DI +LNMKRTHD+LERKTGGLVIWRSGS +I+YRGA+YKYPYFL+++N N + N+ DG+ E+CSS G V+SA +NK LIQGVG P VRFQLPGE QL EE D LLDGLGPRFTDWWGYDPLP+DADLLPAVV GYR+PFRLLPYG+KP LTNDEMT L+RLGRPLPCHFALGRNRKLQGLAAS+IKLWE CEIAKIAVKRGVQNTN+E++A+ELK LTGG LLSRDREF+V YRGKDFLP VS AIE RR + I K D++ LA++ + + T + D D+K S+ R L+ V RT KLS+AL KK RAE LL ELE+ +I Q EIDKEGI+EEERYMLRKVGL+MKPFLLLGRRG+FDGTVENMHLHWKYRELVKII RSI+++H ARTLEAESGGIL+AVER+SKG+AII+YRGKNYKRPASLRPQTLLNKREA+KRS+EAQRRESLKLHVL+L R++DEL+H+L RI + +T ++ +D+ + H Y GA + I+++D +DSSR LQ S D + D D D+ EPS VL+ +T+ L +MN E +E +V+ T I N ESS SS P + ++ S E+PF+A LSNRERLLLRKQAL +KKRPV+AVG+SNIV+GVAKTIK HFQKHPLA+VN+KGRAKGTS+QEV+ +LE+ATGAVLVSQEPSK+IL+RGWGA +++ G+S ++ T G+E + +SPEL AI+LECGL+
Sbjct: 74 AQTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEV-----KREKKLVRKEDER--APTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGK-EVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTD---------------DQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDELKHQLV---SRIKDK-------ETNSKQLVDK-------------------SRLHLARERY---------------GADVILIHSSDGMDSSRDSLQTSHNDKRIDFPSMCD-SDTDEA---NPEPSSESVLKEIETNVLTDMNEEGECTTCSEDLVSQGETS---CYAIVNHEETMESSVKSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVIFKLEQATGAVLVSQEPSKVILYRGWGAREEN--GRSYRMNRSDARKTSAGREGGPRPTVSPELRAAIRLECGLK 1034
Match: A0A6A1WCT8 ((Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic {ECO:0000313|EMBL:KAB1223065.1}))
HSP 1 Score: 1056.97 bits (2732), Expect = 0.000e+0
Identity = 585/1057 (55.35%), Postives = 734/1057 (69.44%), Query Frame = 0
Query: 14 RASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDTTERNKINDS-ASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGTAIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNC---APTLAELTLSSEELRRLRSVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRTHDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNED---NDSNKLTL---RFNDGIDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQLLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGVKPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKIAVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEAIEQRRHRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVPTIEAENYLRDEKRK-VFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLLTELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGFAIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRDVDELQHKLARDEQRINMQLAKD-LTLQTGTEDKLDQRHSEKIEKFYA-APQNCSPNA--ACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVHAESVVAASHTDRG--------HFSDIGN--TGSLRESSFNSSSKVLGPKGLEDFSEEVPFKAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPLAVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHRPGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSR 1045
R+S +T+ L SAI+RIADKLR+LGF + N N +DS +S G+IF+PLPT L K RVGHT D SWS+PENPVP+PGTG AI RYH+L+ + + KQK L+ D N N APTLAEL+L+ E+LRRLR++GI+ +++LK+GKAG+TEGIVN IH+RWR +E+VKI C+D+ R+NMKRTHDLLERKTGGLV+WRSGS +++YRGA+YKYPYFL++ ND++ L NDG E CS + GV+SA + Q L+QGVG PN VRFQLP E +L EE D LL+GLGPRFTDWWG+DPLPVDADLLPA+V GYR+PFRLLPYGVKPILTNDEMT LKRLGRPLPCHFALGRNR LQGLAASI+KLWE CEIAKIAVKRGVQNTN+E++A+ELK LTGG+LLSRD EF VLYRGKDFLP VS AIE+R+ R G+ W+N + +V + G ++ E+E Y+ +K K + SE+R+L+ A+ RT KLS+AL KK +AE LL ELEK E Q EIDKEGI+EEER+MLRKVGL+MK FLL+GRRGVF GTVENMHLHWKYRELVKII E +I+ V A+TLEAESGGIL+AVER++KG+AIIVYRGKNY+RPASLRP TLL KREAMK S+EAQRR+SLKLHVLKL +++D+L +L +DE+ N Q + D L + DK + +E + N P A +E E + Y H+ T +N ND + +S LQA+ +D + G S+ D DG + GS V + K+M EV A S + G H + S++ +S+ L P E+ S ++P + RLSN+ERLLLRKQAL +KKRPVLAVG+SNIV+GVAKTI THF+KHPLA+VN+KGRAKGTS+QE+V +LE+ATGAVLVSQEPSK+IL+RGWGAGDK PG S E +T ++ +E + +SPEL+ AI+LECGL + +
Sbjct: 55 RSSASTSDTQTLPKSAIKRIADKLRSLGFAEETSNTIPRTNAGSDSESSAGEIFIPLPTLLSKNRVGHTIDTSWSSPENPVPEPGTGLAIARYHKLKREAI--KQK---VLDRKDTNGNRGERAPTLAELSLNEEDLRRLRTIGIETRKKLKIGKAGITEGIVNSIHERWRQSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRSGSKIVLYRGANYKYPYFLSDKILPNDTSTDALPDPSKNDGEHNEMNGCSMSLNGVKSAAPTPTQGKSQPKLVQGVGMPNRVRFQLPAEAELAEEADRLLEGLGPRFTDWWGFDPLPVDADLLPAIVPGYRRPFRLLPYGVKPILTNDEMTVLKRLGRPLPCHFALGRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGMLLSRDSEFFVLYRGKDFLPPAVSSAIEERKKR--GIH--WENE------RRKGSASVTTAPEVTLGTVECGS-----ESEVYVASDKEKGLLSEQRKLRSTEAAIKRTNIKLSMALEKKVKAEKLLAELEKVETPQAPEIDKEGITEEERFMLRKVGLRMKAFLLMGRRGVFAGTVENMHLHWKYRELVKIISKETNIEAVRQEAQTLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPHTLLTKREAMKHSLEAQRRKSLKLHVLKLTKNIDDLTLQLVKDEEANNRQSSSDELRYKLAKGDKDSTQPAESLRSTVELESSNLFPPVILASQEEKAEAKDKYEAHS-----------TPMNLNDGMVASVNCLQATQQDKVIGHSSTYD-GDGTGRVKGGSSSELVRKETHANLFKDMTCEVGAAVSTSCPDNLSGGISCPAVVEHCVENNERVEASVKSEKMDSN---LVPTTTENAS-KMPHRTSRLSNKERLLLRKQALKMKKRPVLAVGRSNIVTGVAKTIMTHFKKHPLAIVNVKGRAKGTSVQELVFQLEQATGAVLVSQEPSKVILYRGWGAGDK--PGHS-EKET----ASDAAKEGGTQPPVSPELLAAIRLECGLPYDK 1068
| Match Name | Stats | Description |
|---|---|---|
| A0A4S4DJU0 | E-Value: 0.000e+0, PID: 57.37 | (Uncharacterized protein {ECO:0000313|EMBL:THG0312... [more] |
| A0A5J5AJC3 | E-Value: 0.000e+0, PID: 58.15 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8530... [more] |
| A0A5N6QVK0 | E-Value: 0.000e+0, PID: 56.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8021... [more] |
| A0A7N2L0K2 | E-Value: 0.000e+0, PID: 56.65 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A7N2N9F5 | E-Value: 0.000e+0, PID: 56.56 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6I9UUC3 | E-Value: 0.000e+0, PID: 55.45 | (CRM-domain containing factor CFM2, chloroplastic ... [more] |
| A0A5B6Z5U5 | E-Value: 0.000e+0, PID: 55.68 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3952... [more] |
| A0A2I4EUP9 | E-Value: 0.000e+0, PID: 55.53 | (CRM-domain containing factor CFM2, chloroplastic ... [more] |
| F6HV32 | E-Value: 0.000e+0, PID: 56.41 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5855... [more] |
| A0A6A1WCT8 | E-Value: 0.000e+0, PID: 55.35 | (Chloroplastic group IIA intron splicing facilitat... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
