Resource Type:
Polypeptide
Name:
DCAR_004712
Identifier:
DCAR_004712.mRNA-protein
Sequence:
MERALNRQKVLLGHLLPSSSSSSPDSSLSASLCVAGDSSAYHRQAAFGDD
IVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIV
VGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASA
INTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSE
NVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTG
EEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAV
LLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQ
VDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGAR
CVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNARIA
GTSSS*
Sequence Length:
456
Sequence Checksum:
478701b02b5b46be88cbedf1dff68e74
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_004712, derives from mRNA, DCAR_004712. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MB42 ((Uncharacterized protein {ECO:0000313|EMBL:TQD95963.1}))
HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0
Identity = 379/451 (84.04%), Postives = 417/451 (92.46%), Query Frame = 0
Match: A0A540MB42 ((Uncharacterized protein {ECO:0000313|EMBL:TQD95963.1}))
HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0
Identity = 379/451 (84.04%), Postives = 417/451 (92.46%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSSPD---SSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
M++ALNRQKVLL HL PSSS SSPD ++LSAS C AGDS+AYHR +AFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLL VLKAVI++TNL+P EVGDIVVGTVLAPGS RA+ECRMAAFYAGFPDTVP+RTVNRQCSSGLQAVADVA+AI G+YDIGIAAGLESMTVD +G K+NPKV++F QAR+CLLPMGITSENVA RYGVTR+EQD+AAV SH+RAAAA ASG+FKDEI+PV+TKIVDPKTGEE+ VTISVDDG RP M L+KLKP+FK+DG+TTAGNASQVSDGAGAVLLMKRS+A++KGLPILGVFRSFAAVGVDPAVMGVGPA AIP A+KSAGL++DDIDLFEINEAFASQYVYC KKLELDPEKVNVNGGA+ALGHPLGATGARCVATLLNEMKRRGKD+R+GVISMCIGSGMGAAAVFERGD VDELSNAR
Sbjct: 1 MDKALNRQKVLLQHLRPSSSVSSPDYESAALSASTCAAGDSAAYHRTSAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLAPVLKAVIERTNLNPGEVGDIVVGTVLAPGSLRAMECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVADVAAAIKAGYYDIGIAAGLESMTVDNIGGLSKVNPKVDIFAQARDCLLPMGITSENVAQRYGVTRQEQDRAAVESHRRAAAATASGKFKDEIVPVSTKIVDPKTGEERPVTISVDDGFRPNANMNDLAKLKPAFKRDGSTTAGNASQVSDGAGAVLLMKRSLAMQKGLPILGVFRSFAAVGVDPAVMGVGPAAAIPVAVKSAGLELDDIDLFEINEAFASQYVYCIKKLELDPEKVNVNGGAIALGHPLGATGARCVATLLNEMKRRGKDNRFGVISMCIGSGMGAAAVFERGDSVDELSNAR 451
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498JQ89 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 377/451 (83.59%), Postives = 416/451 (92.24%), Query Frame = 0
Match: A0A498JQ89 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 377/451 (83.59%), Postives = 416/451 (92.24%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSSPD---SSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
M++ALNRQKVLL HL PSSS SSPD ++LSAS C AGDS+AYHR +AFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLL VLKAVI++TNL+P EVGDIVVGTVLAPGS RA+ECRMAAFYAGFPDTVP+RTVNRQCSSGLQAVADVA+AI G+YDIGIAAGLESMTVD +G K+NPKV++F QAR+CLLPMG+TSENVA RYGVTR+EQD+AAV SH+RAAAA ASG+FKDEI+PV+TKIVDPKTGEE+ VTISVDDG RP M L+KLKP+FK+DG+TTAGNASQVSDGAGAVLLMKRS+A++KGLPI GVFRSFAAVGVDPAVMGVGPA AIP A+KSAGL++DDIDLFEINEAFASQYVYC KKLELDPEKVNVNGGA+ALGHPLGATGARCVATLLNEMKRRGKD+R+GVISMCIGSGMGAAAVFERGD VDELSNAR
Sbjct: 1296 MDKALNRQKVLLQHLRPSSSVSSPDYESAALSASTCAAGDSAAYHRTSAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLAPVLKAVIERTNLNPGEVGDIVVGTVLAPGSLRAMECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVADVAAAIKAGYYDIGIAAGLESMTVDNIGGLSKVNPKVDIFAQARDCLLPMGVTSENVAQRYGVTRQEQDRAAVESHRRAAAATASGKFKDEIVPVSTKIVDPKTGEERPVTISVDDGFRPNANMNDLAKLKPAFKRDGSTTAGNASQVSDGAGAVLLMKRSLAMQKGLPIFGVFRSFAAVGVDPAVMGVGPAAAIPVAVKSAGLELDDIDLFEINEAFASQYVYCVKKLELDPEKVNVNGGAIALGHPLGATGARCVATLLNEMKRRGKDNRFGVISMCIGSGMGAAAVFERGDSVDELSNAR 1746
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5I9Q9 ((3-ketoacyl-CoA thiolase 2 {ECO:0000313|EMBL:KAB2636518.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 377/451 (83.59%), Postives = 417/451 (92.46%), Query Frame = 0
Match: A0A5N5I9Q9 ((3-ketoacyl-CoA thiolase 2 {ECO:0000313|EMBL:KAB2636518.1}))
HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 377/451 (83.59%), Postives = 417/451 (92.46%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSSPD---SSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
M++ALNRQKV+L HL PSSS SSPD ++LSAS C AGDS+AYHR +AFGDDIVIVAAYRTAICKAKRGGFKDT+PDDLL VLKAVI++TNL+P EVGDIVVGTVLAPGS RAIECRMAAFYAGFPDTVP+RTVNRQCSSGLQAVAD+A+AI G+YDIGIAAGLESMTVD + K+NPKV++F QAR+C+LPMG+TSENVA RYGVTREEQD+AAV SH+RAAAA ASG+FKDEI+PV+TKIVDPKTGEE+ VTISVDDGIRP M L+KLKP+FK+DG+TTAGNASQVSDGAGAVLLMKRS+A++KGLPILGVFRSFAAVGVDPAVMGVGPA AIP A+KSAGL++DDIDLFEINEAFASQYVYC KKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKD+R+GVISMCIGSGMGAAAVFERGD VDELSNAR
Sbjct: 1 MDKALNRQKVVLQHLRPSSSVSSPDYESAALSASTCAAGDSAAYHRTSAFGDDIVIVAAYRTAICKAKRGGFKDTMPDDLLAPVLKAVIERTNLNPNEVGDIVVGTVLAPGSLRAIECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVADIAAAIKAGYYDIGIAAGLESMTVDNISGLSKVNPKVDIFAQARDCVLPMGMTSENVAERYGVTREEQDRAAVESHRRAAAAAASGKFKDEIVPVSTKIVDPKTGEERPVTISVDDGIRPNANMNDLAKLKPAFKRDGSTTAGNASQVSDGAGAVLLMKRSLAMQKGLPILGVFRSFAAVGVDPAVMGVGPAAAIPVAVKSAGLELDDIDLFEINEAFASQYVYCIKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDNRFGVISMCIGSGMGAAAVFERGDSVDELSNAR 451
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5VZE8 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4291318.1}))
HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0
Identity = 371/454 (81.72%), Postives = 414/454 (91.19%), Query Frame = 0
Match: A0A6J5VZE8 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4291318.1}))
HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0
Identity = 371/454 (81.72%), Postives = 414/454 (91.19%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSS--PDS----SLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
ME+A NRQ+VLL HLLP+SS SS P++ +LSAS+C AGDS+AYHR AAFGDD+VIVAAYRTAICKAKRGGFKDT PDDLL VLKA+I++TNL+P EVGDIVVGTV+APGS RA ECRMAAFYAGFPDTVP+RTVNRQCSSGLQAVADVA++I GFY+IG+AAGLESM+VD++G KINPKV++F QAR+CLLPMGITSENVA RYGVTR+EQD+AAV SH RAAAA ASG+F+DEIIPV+TKIVDPKTGEE+ VTISVDDGIRP M L+KLKP+FK DG+TTAGNASQVSDGAGAVLLMKRS+A++KGLPILGVFRSFAAVGVDPAVMG+GPA AIP A+KSAGL++DDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGA+ALGHPLGATGARCVATLLNEMKRRGKD R+GVISMCIGSGMGAAAVFERGD VDEL N R
Sbjct: 1 MEKAHNRQRVLLQHLLPNSSFSSAPPETHQSAALSASICAAGDSAAYHRTAAFGDDVVIVAAYRTAICKAKRGGFKDTSPDDLLAPVLKALIERTNLNPSEVGDIVVGTVMAPGSLRATECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVADVAASIKAGFYEIGVAAGLESMSVDKLGRMNKINPKVDIFAQARDCLLPMGITSENVAQRYGVTRQEQDKAAVESHSRAAAATASGKFQDEIIPVSTKIVDPKTGEERPVTISVDDGIRPNANMNDLAKLKPAFKADGSTTAGNASQVSDGAGAVLLMKRSLAMQKGLPILGVFRSFAAVGVDPAVMGIGPAAAIPVAVKSAGLELDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGAIALGHPLGATGARCVATLLNEMKRRGKDHRFGVISMCIGSGMGAAAVFERGDSVDELCNVR 454
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZLS9 ((Putative 3-ketoacyl-CoA thiolase 2, peroxisomal {ECO:0000313|EMBL:MPA45447.1}) (2.3.1.16 {ECO:0000313|EMBL:MPA45447.1}))
HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0
Identity = 368/456 (80.70%), Postives = 420/456 (92.11%), Query Frame = 0
Match: A0A5B6ZLS9 ((Putative 3-ketoacyl-CoA thiolase 2, peroxisomal {ECO:0000313|EMBL:MPA45447.1}) (2.3.1.16 {ECO:0000313|EMBL:MPA45447.1}))
HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0
Identity = 368/456 (80.70%), Postives = 420/456 (92.11%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSS--SPDSSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNARIAGTSS 454
M++A+NRQ+VLL HL PSSS S + + SLSAS+C+AGDS+AYHR AAFGDD+VIVAA+RTA+CK+KRGGFKDTLPDDLL VLKA+I+KTNL+P EVGDIVVGTVLAPGS R IECRMAAFYAGFP+TVP+RTVNRQCSSGLQAVADVA++I GFYDIGI AGLESMTV+Q+ ++NP+VE F +AR+CLLPMGITSENVA RYGVTR+EQDQAAV+SHKRAAAA ASG+FKDEIIPV+TKIVDPKTGEE+ V+I VDDGIRP T + L+KLK +FKKDGTTTAGNASQVSDGAGAVLLMKRS+A++KGLPILGVFRSFAAVGVDPAVMG+GPAVAIPAA+KSAGL++DDIDLFEINEAFASQ+VYCCKKLELDPEKVNVNGGA+ALGHPLGATGARCVATLL+EMKRRGKD R+GVISMCIGSGMGAAAVFERGD VD+L NAR+ +++
Sbjct: 1 MDKAINRQRVLLEHLRPSSSFSHQTREYSLSASICLAGDSAAYHRTAAFGDDVVIVAAHRTAMCKSKRGGFKDTLPDDLLAPVLKALIEKTNLNPSEVGDIVVGTVLAPGSQRGIECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAASIKAGFYDIGIGAGLESMTVNQISSAPRVNPRVESFAEARDCLLPMGITSENVAQRYGVTRQEQDQAAVVSHKRAAAATASGKFKDEIIPVSTKIVDPKTGEERPVSIFVDDGIRPNTNVTDLAKLKTAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAMQKGLPILGVFRSFAAVGVDPAVMGIGPAVAIPAAVKSAGLELDDIDLFEINEAFASQFVYCCKKLELDPEKVNVNGGAMALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDSVDDLCNARMISSNN 456
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5U683 ((3-ketoacyl-CoA thiolase 2, peroxisomal-like {ECO:0000313|RefSeq:XP_021834832.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 370/454 (81.50%), Postives = 414/454 (91.19%), Query Frame = 0
Match: A0A6P5U683 ((3-ketoacyl-CoA thiolase 2, peroxisomal-like {ECO:0000313|RefSeq:XP_021834832.1}))
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 370/454 (81.50%), Postives = 414/454 (91.19%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSS--PDS----SLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
ME+A NRQ+VLL HLLP+SS SS P++ +LSAS+C AGDS+AYHR AAFGDD+VIVAAYRTAICKAKRGGFKDT PDDLL VLKA+I++TNL+P EVGDIVVGTVLAPGS RAIECRMAAFYAGFPDTVP+RTVNRQCSSGLQAVADVA++I GFY+IG+AAGLESM+VD++ KINPKV++F QAR+CLLPMGITSENVA RYGVTR+EQD+AAV SH RAAAA ASG+F+DEI+PV+TKIVDPKTGEE+ VTISVDDGIRP M L+K+KP+FK DG+TTAGNASQVSDGAGAVLLMKRS+A++KGLPILGVFRSFAAVGVDPAVMG+GPA AIP A+KSAGL++DDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGA+ALGHPLGATGARCVATLLNEMKRRGKD R+GVISMCIGSGMGAAAVFERGD VDEL N R
Sbjct: 1 MEKAHNRQRVLLRHLLPNSSFSSAPPETHQSAALSASICAAGDSAAYHRTAAFGDDVVIVAAYRTAICKAKRGGFKDTSPDDLLAPVLKALIERTNLNPSEVGDIVVGTVLAPGSLRAIECRMAAFYAGFPDTVPIRTVNRQCSSGLQAVADVAASIKAGFYEIGVAAGLESMSVDKIDTMNKINPKVDIFAQARDCLLPMGITSENVAQRYGVTRQEQDKAAVESHSRAAAATASGKFQDEIVPVSTKIVDPKTGEERPVTISVDDGIRPNANMNDLAKIKPAFKADGSTTAGNASQVSDGAGAVLLMKRSLAMQKGLPILGVFRSFAAVGVDPAVMGIGPAAAIPVAVKSAGLELDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGAIALGHPLGATGARCVATLLNEMKRRGKDHRFGVISMCIGSGMGAAAVFERGDSVDELCNVR 454
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6V5 ((3-ketoacyl-CoA thiolase 2, peroxisomal like {ECO:0000313|EMBL:PSR86376.1}))
HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 370/451 (82.04%), Postives = 411/451 (91.13%), Query Frame = 0
Match: A0A2R6P6V5 ((3-ketoacyl-CoA thiolase 2, peroxisomal like {ECO:0000313|EMBL:PSR86376.1}))
HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 370/451 (82.04%), Postives = 411/451 (91.13%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSS---SSSSPDSSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
MERA+NRQ+VL HL PSS S S +SSLSAS+C+AGDS+AYHR AAFGDD+VIVAAYRTA+CKAKRGGFKDTL DDLL VLKA+I+KTNL+P EVGDIVVGTVL PGS RA ECRMAAFYAGFP+TVP+RTVNRQCSSGLQAVADVA+AI GFYDIGI AGLESMT DQ+G K+NP+V+ F QAR+CLLPMGITSENVA RYGVTR+EQDQAAV+SHKRAAAA ASG+FKDEIIPV+TKIVDPKTG EK V ISVDDGIRP TTM L+KLKP+FKKDG+TTAGNASQ++DGAGAVLLMKRS+A++KGLPILGVFRSF A GVDPAVMG+GPA+AIPAA+KSAGL++DDIDLFEINEAFASQ+VYCCKKLELD EKVNVNGGA+ALGHPLGATGARCVATLL+EM+RRGKD RYGVISMCIGSGMGAAAVFERGD VD+L NAR
Sbjct: 1 MERAINRQRVLREHLRPSSPSLSRQSLESSLSASICLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTLADDLLAPVLKALIEKTNLNPNEVGDIVVGTVLPPGSQRATECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTADQIGRIPKVNPRVDNFAQARDCLLPMGITSENVAQRYGVTRQEQDQAAVVSHKRAAAATASGKFKDEIIPVSTKIVDPKTGVEKPVVISVDDGIRPNTTMTDLAKLKPAFKKDGSTTAGNASQLTDGAGAVLLMKRSLAMQKGLPILGVFRSFVAAGVDPAVMGIGPAIAIPAAVKSAGLELDDIDLFEINEAFASQFVYCCKKLELDTEKVNVNGGAMALGHPLGATGARCVATLLHEMRRRGKDCRYGVISMCIGSGMGAAAVFERGDSVDDLCNAR 451
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4U3Z6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR56891.1}))
HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 368/454 (81.06%), Postives = 413/454 (90.97%), Query Frame = 0
Match: V4U3Z6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR56891.1}))
HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 368/454 (81.06%), Postives = 413/454 (90.97%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSSPDSSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNARIAGTSS 454
ME+AL+RQ++LL HL PSSS +S ++SAS+C AG+++ YHR+ AF DD+VIVAAYRTAICKAKRGGFKDTL DDLL VLKAVI+KT L+P EVGDIVVGTVLAPGS RA+ECRMAAFYAGFP+TVPLRTVNRQCSSGLQAVADVA+AI G YDIGIAAGLESMTV+ + + ++NPKVE+F QAR+CLLPMGITSENVA R+GVTR+EQD AA+ SH+RAAAA ASG+FKDEIIPVNTKIVDPKTG EK VTISVDDGIRP TT+ L+KLKP+FKKDGTTTAGNASQVSDGAGAVLLMKRS+AV+KGLPILGVFRSFAAVGVDP+VMG+GPAVAIPAA+KSAGLQ+DDI+LFEINEAFASQYVYC KKL LDPEKVNVNGGA+ALGHPLGATGARCVATLL+EMKRRGKD R+GVISMCIGSGMGAAAV ERGDCVDEL NAR+ T +
Sbjct: 1 MEKALHRQRILLQHLQPSSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAIESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFAAVGVDPSVMGIGPAVAIPAAVKSAGLQLDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVLERGDCVDELCNARMVPTHT 454
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YX07 ((3-ketoacyl-CoA thiolase 2, peroxisomal {ECO:0000313|RefSeq:XP_010243983.1}))
HSP 1 Score: 760.755 bits (1963), Expect = 0.000e+0
Identity = 366/454 (80.62%), Postives = 413/454 (90.97%), Query Frame = 0
Match: A0A1U7YX07 ((3-ketoacyl-CoA thiolase 2, peroxisomal {ECO:0000313|RefSeq:XP_010243983.1}))
HSP 1 Score: 760.755 bits (1963), Expect = 0.000e+0
Identity = 366/454 (80.62%), Postives = 413/454 (90.97%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSSSSPDSSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKVEMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNARIAGTSS 454
ME+A+NRQ+VLL HL PSS + SSLSAS+C+AGDS+AYHR AAFGDD+VIVAAYRTA+CK+KRGG+KDT PDDLL VLKA+I+KTNL+P EVGDI+VGTVLAPGS RA ECRMAAFYAGFP+TVP+RTVNRQCSSGLQAVADVA+AI GFYDIGI AGLESMT++ MG INP+ + FQ A +CLLPMGITSENVA R+GV+R+EQDQAAV SH++AAAA ASG+FKDEIIPV TKIVDPKTG EK VTISVDDGIRP T++ L+KLKP FK+DG+TTAGN+SQVSDGAGAVLLMKRSVA++KGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAA+KSAGL++DDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGA+A+GHPLGATGARCVATLL+EMKRRGKD R+GVISMCIG+GMGAAAVFERGDCVD L NAR GT++
Sbjct: 1 MEKAINRQRVLLDHLRPSSQTHH-QSSLSASVCLAGDSAAYHRTAAFGDDVVIVAAYRTALCKSKRGGYKDTHPDDLLAPVLKALIEKTNLNPNEVGDIIVGTVLAPGSQRATECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTINPMGWEGSINPRAKDFQPAEDCLLPMGITSENVAHRFGVSRQEQDQAAVESHRKAAAATASGKFKDEIIPVTTKIVDPKTGNEKHVTISVDDGIRPDTSLATLAKLKPVFKRDGSTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAAVKSAGLELDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDCVDPLCNARQVGTNN 453
BLAST of DCAR_004712 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HAP8 ((Peroxisomal 3-ketoacyl-CoA thiolase 3 {ECO:0000313|EMBL:GFZ20156.1}))
HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 371/453 (81.90%), Postives = 412/453 (90.95%), Query Frame = 0
Match: A0A7J0HAP8 ((Peroxisomal 3-ketoacyl-CoA thiolase 3 {ECO:0000313|EMBL:GFZ20156.1}))
HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 371/453 (81.90%), Postives = 412/453 (90.95%), Query Frame = 0
Query: 1 MERALNRQKVLLGHLLPSSSS---SSPDSSLSASLCVAGDSSAYHRQAAFGDDIVIVAAYRTAICKAKRGGFKDTLPDDLLGAVLKAVIDKTNLDPREVGDIVVGTVLAPGSHRAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVASAINTGFYDIGIAAGLESMTVDQMGINWKINPKV--EMFQQARECLLPMGITSENVAMRYGVTREEQDQAAVISHKRAAAANASGRFKDEIIPVNTKIVDPKTGEEKSVTISVDDGIRPGTTMEALSKLKPSFKKDGTTTAGNASQVSDGAGAVLLMKRSVAVKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAALKSAGLQVDDIDLFEINEAFASQYVYCCKKLELDPEKVNVNGGALALGHPLGATGARCVATLLNEMKRRGKDSRYGVISMCIGSGMGAAAVFERGDCVDELSNAR 448
MERA+NRQ+VLL HL PSS S S +SSLSAS+C+AGDS+AYHR AAFGDD+VIVAAYRTA+CKAKRGGFKDTL DDLL VLKA+I+KTNL+P EVGDIVVGTVL PGS RA ECRMAAFYAGFP+TVP+RTVNRQCSSGLQAVADVA+AI GFYDIGI AGLESMT DQ+G K+NP+V + F QAR+CLLPMGITSENVA RYGVTR+EQDQAAV+SHKRAAAA ASG+FKDEIIPV+TKIVDPKTG EK V ISVDDGIRP TTM L+KLKP+FKKDG+TTAGNASQ++DGAGAVLLMKRS+A++KGLPILGVFRSF A GVDPAVMG+GPA+AIPAA+KSAGL++DDIDLFEINEAFASQ+VYCCKKLELD EKVNVNGGA+ALGHPLGATGARCVATLL+EM+RRGKD RYGVISMCIGSGMGAAAVFERGD VD+L NAR
Sbjct: 1 MERAINRQRVLLEHLRPSSPSLPRQSLESSLSASICLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTLADDLLARVLKALIEKTNLNPNEVGDIVVGTVLPPGSQRATECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTADQIGRIPKVNPRVGVDNFAQARDCLLPMGITSENVAQRYGVTRQEQDQAAVVSHKRAAAATASGKFKDEIIPVSTKIVDPKTGVEKPVIISVDDGIRPNTTMTDLAKLKPAFKKDGSTTAGNASQLTDGAGAVLLMKRSLAMQKGLPILGVFRSFVAAGVDPAVMGIGPAIAIPAAVKSAGLELDDIDLFEINEAFASQFVYCCKKLELDTEKVNVNGGAMALGHPLGATGARCVATLLHEMRRRGKDCRYGVISMCIGSGMGAAAVFERGDSVDDLCNAR 453
| Match Name | Stats | Description |
|---|---|---|
| A0A540MB42 | E-Value: 0.000e+0, PID: 84.04 | (Uncharacterized protein {ECO:0000313|EMBL:TQD9596... [more] |
| A0A498JQ89 | E-Value: 0.000e+0, PID: 83.59 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N5I9Q9 | E-Value: 0.000e+0, PID: 83.59 | (3-ketoacyl-CoA thiolase 2 {ECO:0000313|EMBL:KAB26... [more] |
| A0A6J5VZE8 | E-Value: 0.000e+0, PID: 81.72 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4291... [more] |
| A0A5B6ZLS9 | E-Value: 0.000e+0, PID: 80.70 | (Putative 3-ketoacyl-CoA thiolase 2, peroxisomal {... [more] |
| A0A6P5U683 | E-Value: 0.000e+0, PID: 81.50 | (3-ketoacyl-CoA thiolase 2, peroxisomal-like {ECO:... [more] |
| A0A2R6P6V5 | E-Value: 0.000e+0, PID: 82.04 | (3-ketoacyl-CoA thiolase 2, peroxisomal like {ECO:... [more] |
| V4U3Z6 | E-Value: 0.000e+0, PID: 81.06 | (Uncharacterized protein {ECO:0000313|EMBL:ESR5689... [more] |
| A0A1U7YX07 | E-Value: 0.000e+0, PID: 80.62 | (3-ketoacyl-CoA thiolase 2, peroxisomal {ECO:00003... [more] |
| A0A7J0HAP8 | E-Value: 0.000e+0, PID: 81.90 | (Peroxisomal 3-ketoacyl-CoA thiolase 3 {ECO:000031... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |