Resource Type:
Polypeptide
Name:
DCAR_002995
Identifier:
DCAR_002995.mRNA-protein
Sequence:
MQTSCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRI
DFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHH
VFDELIQRASVCVEGGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAA
GVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIV
TPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMD
KIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISE
LPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPES
IGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRI
TSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLV
KLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVL
NVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMC
FLSASNKRKRNASGSGVDAIT*
Sequence Length:
572
Sequence Checksum:
b3db5d425f7f378ac2a0544f69a6c249
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002995, derives from mRNA, DCAR_002995. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q1R9 ((Plant intracellular Ras-group-related LRR protein {ECO:0000313|EMBL:PSS00346.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 387/572 (67.66%), Postives = 461/572 (80.59%), Query Frame = 0
Match: A0A2R6Q1R9 ((Plant intracellular Ras-group-related LRR protein {ECO:0000313|EMBL:PSS00346.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 387/572 (67.66%), Postives = 461/572 (80.59%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEP--------------LSYDYRESSEPLSYDYRAAGVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRN 561
S K +DEV+EEIMRIHRSLP RPG++EVEAAK LI+NVE E ++RI+ IS+Q K +VP+ELF +LQ+MQ+ WV FQSKE +EALKLLDL+NAH VFDELIQRAS C+ SDS +P LS + S S + A ++ L + S+L++RDDT++ +KAT H DGI G +RSGD+ TP I+DS+LKS +S+G+DG+KLSLIKLASLIE S+KGT DL+L+ KLMD+++WLPDSIGKLSSL TLDLSENRI+ALPATIGGLSSL KLDLHSN+I ELPD++GDLLSLV LDL NQL SLP+TFGRLVRLEELDLS+NHL +LPESIGSLVSL+ L VETNNIEEIPH+I CSSL+ELRADYNRLKALPEAVGR+ SLE+LS+RYNNV +LPTTM+SL++LREL++SFNELES+PESLC ATT+VK+NISNNFADL LP SIGNLELLEEL++SNNQIR+LPDSF L +LRVLNVEGNPLEVPPRS+ DMGA+AVVQYMAEL+AKRN K+ VKQKKSWA +CF S SNKRKRN
Sbjct: 3 SSSKPIDEVVEEIMRIHRSLPTRPGIDEVEAAKTLIQNVEKEDQARIEAISRQRKAPEVPEELFMVLQEMQKNWVYFQSKEQKKEALKLLDLENAHEVFDELIQRASRCIPS----------SDSHQPSYSMASTSSTNSSGLSLENSASFSGRSLNSTATATTSTLSLYYDKQPAKPSELYSRDDTFVKKAKATFHVDGIRGSLRSGDVSTPQILDSSLKSASSSGQDGEKLSLIKLASLIEVYSKKGTRDLHLQNKLMDQVDWLPDSIGKLSSLITLDLSENRIIALPATIGGLSSLTKLDLHSNRIGELPDSMGDLLSLVCLDLSANQLTSLPATFGRLVRLEELDLSSNHLQMLPESIGSLVSLKKLIVETNNIEEIPHSIGQCSSLRELRADYNRLKALPEAVGRLASLEILSVRYNNVRQLPTTMSSLSNLRELNVSFNELESLPESLCFATTIVKINISNNFADLQFLPRSIGNLELLEELDISNNQIRILPDSFRSLLRLRVLNVEGNPLEVPPRSIADMGAQAVVQYMAELVAKRNAKTQTVKQKKSWAQICFFSKSNKRKRN 564
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I7E7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5960839.1}))
HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0
Identity = 380/572 (66.43%), Postives = 456/572 (79.72%), Query Frame = 0
Match: A0A7J7I7E7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5960839.1}))
HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0
Identity = 380/572 (66.43%), Postives = 456/572 (79.72%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSG-------FEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVD 568
S K+++EV+EEIMR HRSLPARPG++EVEAAK LI NV+ E+++RI+ I+++ K +VP+ELF++LQ+MQ+ V FQ KE REALKLLDLDN H +FD+LI RAS C+ + S S ++ LS+ + S + SS L +G SS+LFTRDD+Y+ A+ + DGI G +RSGD +TP I+DS+LK +++G+DG+KLSLIKLASLIE S+KGT DLNL+ KLMD+IEWLPDSIGKLSSL TLDLSENRILALPA I GL SL KLDLHSN+ISELPD+IGDLLSLV LD+ GNQL SLP TFGRLVRLEELDLS+NHL VLPE IGSLVSL+ L+VETNNIEEIPHTI+ CSSLKEL ADYNRLKALPEAVGRI SLE+LS+RYNN+ +LPTTM+SL++LREL++SFNELESVPESLC ATTLVK+NISNNFADL LP SIGNLELLEEL++SNNQIR+LPDSF MLS+LRVLN+EGNP+EVPPR++ MGA+AVVQYMAEL AKR+VK VKQK SW +CF S SNKRKR SG+D
Sbjct: 3 SSAKSIEEVVEEIMRTHRSLPARPGIDEVEAAKTLILNVDKEEQARIEAIARKRKSLEVPEELFRVLQEMQKNLVHFQCKEQKREALKLLDLDNVHSLFDDLILRASKCLPSSSASNSHHPSPSIASTSSTNWSTLSFTNSNTFSVASLNSPVTATTFSSGLHYDKGPAKSSELFTRDDSYVKKGTASFYSDGIAGSIRSGDALTPQILDSSLKIPSTSGQDGEKLSLIKLASLIEVCSKKGTRDLNLQNKLMDQIEWLPDSIGKLSSLITLDLSENRILALPAKISGLLSLTKLDLHSNRISELPDSIGDLLSLVCLDVSGNQLTSLPETFGRLVRLEELDLSSNHLPVLPELIGSLVSLKKLNVETNNIEEIPHTISQCSSLKELHADYNRLKALPEAVGRIASLEILSVRYNNIRQLPTTMSSLSNLRELNVSFNELESVPESLCFATTLVKMNISNNFADLQSLPRSIGNLELLEELDISNNQIRILPDSFRMLSRLRVLNMEGNPMEVPPRNIAQMGAQAVVQYMAELFAKRDVKPQAVKQKTSWIQICFFSKSNKRKR----SGMD 570
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4E8Z6 ((Uncharacterized protein {ECO:0000313|EMBL:THG12578.1}))
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 379/572 (66.26%), Postives = 456/572 (79.72%), Query Frame = 0
Match: A0A4S4E8Z6 ((Uncharacterized protein {ECO:0000313|EMBL:THG12578.1}))
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 379/572 (66.26%), Postives = 456/572 (79.72%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSG-------FEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVD 568
S K+++EV+EEIMR HRSLPARPG++EVEAAK LI NV+ E+++RI+ I+++ K +VP+ELF++LQ+MQ+ V FQSKE REALKLLDLDN H +FD+LI RAS C+ + S S ++ LS+ + S + SS L +G SS+LFTRDD+Y+ A+ + DGI G +RSGD +TP I+DS+LK +++G+DG+KLSLIKLASLIE S+KGT DLNL+ KLMD+IEWLPDSIGKLSSL TLDLS+NRILALPA I GL SL KLDLHSN+ISELPD+IGDLLSLV LD+ GNQL SLP TFGRLVRLEELDLS+NHL VLPE IGSLVSL+ L+VETNNIEEIPHTI+ CSSLKEL ADYNRLKALPEAVGRI SLE+LS+RYNN+ +LPTTM+SL++LRE ++SFNELESVPESLC ATTLVK+NISNNFADL LP SIGNLELLEEL++SNNQIR+LPDSF MLS+LRVLN+EGNP+EVPPR++ MGA+AVVQYMAEL AKR+VK VKQK SW +CF S SNKRKR SG+D
Sbjct: 3 SSAKSIEEVVEEIMRTHRSLPARPGIDEVEAAKTLILNVDKEEQARIEAIARKRKSLEVPEELFRVLQEMQKNLVHFQSKEQKREALKLLDLDNVHSLFDDLILRASKCLPSSSASNSHHPSPSIASTSSTNWSTLSFTNSNTFSVASLNSPVTATTFSSGLHYDKGPAKSSELFTRDDSYVKKGTASFYSDGIAGSIRSGDALTPQILDSSLKIPSTSGQDGEKLSLIKLASLIEVCSKKGTRDLNLQNKLMDQIEWLPDSIGKLSSLITLDLSKNRILALPAKISGLLSLTKLDLHSNRISELPDSIGDLLSLVCLDVSGNQLTSLPETFGRLVRLEELDLSSNHLPVLPELIGSLVSLKKLNVETNNIEEIPHTISQCSSLKELHADYNRLKALPEAVGRIASLEILSVRYNNIRQLPTTMSSLSNLREFNVSFNELESVPESLCFATTLVKMNISNNFADLQSLPRSIGNLELLEELDISNNQIRILPDSFRMLSRLRVLNMEGNPMEVPPRNIAQMGAQAVVQYMAELFAKRDVKPQAVKQKTSWIQICFFSKSNKRKR----SGMD 570
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJA8 ((Plant intracellular Ras-group-related LRR protein {ECO:0000313|EMBL:PSS30098.1}))
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 376/571 (65.85%), Postives = 456/571 (79.86%), Query Frame = 0
Match: A0A2R6RJA8 ((Plant intracellular Ras-group-related LRR protein {ECO:0000313|EMBL:PSS30098.1}))
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 376/571 (65.85%), Postives = 456/571 (79.86%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKS----GFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVDAI 570
S K +DEV+EEIMRIHRSL ARPG++E+EAAK LI+NVE E ++RI+ IS+Q K +VP+ELF +LQ+MQ+ V FQSKE +EA+ LLDL+NAH VFDELIQRAS CV S + LS S S + A ++S L + + S+L++RDDT++ KAT H DGI G +RSGD+ TP I+DS+LKS + +G+DG+KLSLI+LASLIE S+KGT DLNL+ KLMD+++WLPDSIGKLSSL TLDLSENRI+ALPATIGGLSSL KLDLHSN I ELPD+IGDLLSLV LDL NQL LP+TFGRLVRLEELDLS+NHL +LPESIGSL+SL+ L VETNNIEEIPH+I CSSL+ELRADYNRLKALPEAVGRI SL++LS+RYNNV +LPTTM+SL++LREL++SFNELES+PESLC A+T+VK+N+SNNFADL LP SIGNLELLEEL++SNNQIR+LPDSF L +LRVLNVEGNPLE PPRS+ DMGA+AVVQYMAE++AKR+ K+ VKQKKSWA +CF S SNKRKR+ G+D +
Sbjct: 3 SSVKPIDEVVEEIMRIHRSLTARPGIDEIEAAKTLIQNVEKEDQARIEAISRQRKVPEVPEELFMVLQEMQKNLVYFQSKEQKKEAMTLLDLENAHEVFDELIQRASRCVPSSNSHQPSFSMASTSSTNSSGLSLTNSASFSGGSLNSPATATSSTSSLYYDKHLAKPSELYSRDDTFVKKVKATFHVDGIRGSLRSGDLSTPQILDSSLKSTSISGQDGEKLSLIRLASLIEVYSKKGTRDLNLQNKLMDQVDWLPDSIGKLSSLITLDLSENRIMALPATIGGLSSLTKLDLHSNGIDELPDSIGDLLSLVCLDLSANQLTYLPATFGRLVRLEELDLSSNHLPMLPESIGSLISLKKLIVETNNIEEIPHSIGQCSSLRELRADYNRLKALPEAVGRIASLKILSVRYNNVRQLPTTMSSLSNLRELNVSFNELESLPESLCFASTIVKINVSNNFADLQFLPRSIGNLELLEELDISNNQIRILPDSFRSLLRLRVLNVEGNPLEEPPRSIADMGAQAVVQYMAEIVAKRDAKTQMVKQKKSWAQICFFSKSNKRKRD----GMDYV 569
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BX43 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547615.1}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 387/579 (66.84%), Postives = 457/579 (78.93%), Query Frame = 0
Match: A0A5J5BX43 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547615.1}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 387/579 (66.84%), Postives = 457/579 (78.93%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASS------------ILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVDAI 570
S K++D V+EEIMRIHRSLPARP ++EVEAAK LIRNVE E + R+D I++Q K + VP ELF ILQ+MQ+ V FQSKE REA+KLLDL+N H +FD+LIQRAS C+ + SG S + SS L+ +G +S + ++E V +S+L TRDD+YL +KAT DGIG G+RSGD TP I+DSTLKS +++G+D +KLSLIKLASLIE SS+KGT DLNL KLMD+IEWLPDSIGKLSSL TLDLSENRILALPATIGGLSSL KLDLHSN+ISELP++IGDLLSLV LDLRGNQL SLP TFGRL+RL+ELDLS+N L VLPES+GSLVSL+ L VETN+IEE PHTI CSSL+ELRADYNRLKALPEAVGRI SLE+LS+RYNN+ +LPTTM+SL+SLRELD+SFNELESVPESLC ATTLVK+NISNNFADL LP SIGNLE LEEL++SNNQIR+LPDSF MLS+LR L VEGNPLEVPPR++ +MGA+AVVQYM L AK +VK PVKQKK+W+ +CF S SNKRKRN G+D +
Sbjct: 3 SSAKSIDGVVEEIMRIHRSLPARPAIDEVEAAKTLIRNVEKEDQLRLDAITRQTKSAAVPQELFMILQEMQKNLVYFQSKEQKREAVKLLDLENVHSLFDDLIQRASKCL--SSTSGLNYQQSSYSSASTSSTNSSSLSLTNSASFSGGSLNSPVTTSTTTSSSSLYHDREPVK-ASELVTRDDSYLKKAKATFCVDGIGAGLRSGDFSTPHILDSTLKSPSTSGQDAEKLSLIKLASLIEVSSKKGTRDLNLHNKLMDQIEWLPDSIGKLSSLITLDLSENRILALPATIGGLSSLTKLDLHSNRISELPESIGDLLSLVCLDLRGNQLTSLPPTFGRLIRLQELDLSSNQLSVLPESVGSLVSLKKLSVETNDIEEFPHTIGQCSSLRELRADYNRLKALPEAVGRIGSLEILSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNISNNFADLQSLPRSIGNLENLEELDISNNQIRILPDSFRMLSQLRGLRVEGNPLEVPPRNIIEMGAQAVVQYMTALAAKSDVKPQPVKQKKTWSQICFFSRSNKRKRN----GLDYV 574
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZJW0 ((Putative plant intracellular Ras-group-related LRR protein 4 {ECO:0000313|EMBL:MPA43626.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43626.1}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 379/579 (65.46%), Postives = 458/579 (79.10%), Query Frame = 0
Match: A0A5B6ZJW0 ((Putative plant intracellular Ras-group-related LRR protein 4 {ECO:0000313|EMBL:MPA43626.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43626.1}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 379/579 (65.46%), Postives = 458/579 (79.10%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRAS------------SILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVDAI 570
S ++VDEV+EEIMRIHRSLPARP ++E+E AK LIRNV+NE +SR++ I++Q K + VP ELF ILQ+MQ+ V FQSKE REA+KLLDL+N H +FD+LIQRAS C+ + + + + + S + S S + G+ + S+ +KE V S LFTRDD+YL +KAT + DG G G+RSGD+ TP I+DSTLKS +++G+D +KLSLIKLASLIE SS+KGT DLNL+ KLMD+IEWLPDSIGKLSSL TLDLSENRI+ALPATIGGLSSL KLDLHSN+ISELP+ IGDLLSLV LDLRGNQL SLP TFGRL+RL+ELDLS+N L VLPES GSLVSL+ L VETN++EE PHTI CSSL+ELRADYN LK+LPEAVGRI SLE+LS+RYNN+ +LPTTM+SL+SL ELD+SFNELESVPESLC ATTLVK+NISNNFADL LP SIGNLE LEEL++SNNQIR+LPDSF MLS+LRVL VEGNPLEVPPR++ +MGA+AVVQYM L+AKR+ K PVKQKK+WA +CF SNKRKR+ G+D +
Sbjct: 3 SSARSVDEVVEEIMRIHRSLPARPAIDEIEVAKTLIRNVDNEDQSRLEAIARQTKSADVPQELFMILQEMQKILVYFQSKEQKREAVKLLDLENVHSLFDDLIQRASKCLPSTSGTNYHQSSAST---SSTNSSSLSLTNSASFSGGGLNSPVTTTTTTTTSSLSLYHDKEPVKASD-LFTRDDSYLKKAKATFYVDGFGAGLRSGDLSTPQILDSTLKSPSTSGQDAEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDQIEWLPDSIGKLSSLITLDLSENRIVALPATIGGLSSLTKLDLHSNRISELPEFIGDLLSLVCLDLRGNQLTSLPPTFGRLIRLQELDLSSNRLSVLPESTGSLVSLKKLSVETNDLEEFPHTIGQCSSLRELRADYNCLKSLPEAVGRIGSLEILSVRYNNIKQLPTTMSSLSSLMELDVSFNELESVPESLCFATTLVKMNISNNFADLRSLPRSIGNLENLEELDISNNQIRILPDSFRMLSRLRVLRVEGNPLEVPPRNIIEMGAQAVVQYMTALVAKRDAKPQPVKQKKTWAQICFFLRSNKRKRD----GLDYV 573
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G9V9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129416.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 369/565 (65.31%), Postives = 460/565 (81.42%), Query Frame = 0
Match: A0A834G9V9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129416.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 369/565 (65.31%), Postives = 460/565 (81.42%), Query Frame = 0
Query: 7 KTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASSILSE----------KEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVT-STGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKR 560
K+VDEV+EEIMRIHRSLP RPG++EVEAAK LI+N+E E + R++ I++Q K ++VP+E+F + +MQ+ V FQSKE +EALKLLDL+N H +FD+LIQRAS C+ S S LS S S + + + + S++ + + SS+LFTRDDTY+ +KAT++ DGIGGG+RSGD + P I+D++LKS + +G++G+KLSLIKLASLIEA S+KGT +LNL+ KLMD+++WLPDSIGKLSSL TLDLSEN I++LPATIGGLSSL KLDLHSN+IS+LPD+IG+LLSLV LDLRGNQL SLPSTFGRLVRLEELDLS+NHL VLP+SIGSL++L+ L+VETNNIEE PHTI +CSSL ELRADYNRLKALPEAVGRI+SLE+LS+RYNN+ +LPTTM+SL +L+EL++SFNELES+PESLC ATTLVK+N+SNNFADL LP SIGNLE+LEEL++SNNQIR LPDSF MLS+LRVLNVEGNPLE PPR + +MGA+AVVQYMA+L+AKR+ K+ VKQKKSWA++CFL SNKRKR
Sbjct: 6 KSVDEVVEEIMRIHRSLPPRPGIDEVEAAKTLIQNLEKEDQVRLEAITRQKKRAEVPEEMFMVFLEMQKNLVYFQSKEQKQEALKLLDLENTHSLFDDLIQRASNCLSSNPHQPNYSFASTSSTNLS------SVANSASFSHSSLNSDSVVMDSTSSSSSLYFNKKPAKSSELFTRDDTYVKKAKATLYADGIGGGLRSGDALKPQILDTSLKSPSLKSGQEGEKLSLIKLASLIEAYSKKGTQELNLQSKLMDQVDWLPDSIGKLSSLITLDLSENHIISLPATIGGLSSLTKLDLHSNRISDLPDSIGELLSLVFLDLRGNQLKSLPSTFGRLVRLEELDLSSNHLPVLPDSIGSLITLKKLNVETNNIEEFPHTIGNCSSLVELRADYNRLKALPEAVGRISSLEILSVRYNNIKQLPTTMSSLTNLKELNISFNELESLPESLCFATTLVKINVSNNFADLRSLPRSIGNLEMLEELDISNNQIRFLPDSFRMLSRLRVLNVEGNPLEAPPRKIAEMGAQAVVQYMADLVAKRDAKTETVKQKKSWANICFLPNSNKRKR 564
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZI65 ((Putative leucine-rich repeat family protein {ECO:0000313|EMBL:MPA43625.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43625.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 382/575 (66.43%), Postives = 459/575 (79.83%), Query Frame = 0
Match: A0A5B6ZI65 ((Putative leucine-rich repeat family protein {ECO:0000313|EMBL:MPA43625.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43625.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 382/575 (66.43%), Postives = 459/575 (79.83%), Query Frame = 0
Query: 4 SCPKTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEPL----SYDYRESS----EPLSYDYRAAGVRASSILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVDAI 570
S K++DEV+EEIMRIHRSLP RP ++EVEAAK LIRNV+NE++SR++ I++Q K VP+ELF ILQ++Q+ V FQSKE EALKLLDL+N H V D+LIQRAS C+ + S S L S D S L +SS+ +KE + +S+LFTRDD+YL +KAT + DGI G+RSGD+ TP I+DS+LKS +++G+DG+KLSLIKLA LIE SS+KGT D+NL+ KLMD+IEWLPDSIGKLSSL TLDLSENRI+ALPATIGGLSSL KLDLHSN+I+ELP++IGDLLSLV LDLRGNQL LP TFGRL+R++ELDLS+N L VLPESIGSLVSL+ L VETN+IEE PHTI CSSLKELRA+YNRLKALPEAVGRI SLE+LS+RYNN+ +LPTTM+SL+SL ELD+SFNELESVPESLC ATTLVK+NISNNFADL LP SIGNLE LEEL++SNNQIR+LPDSF MLS+LRVL VEG PLEVPPR++ + GA+AVVQYM EL+AKR+VK PVKQKK+WA +CF S SNKRKR+ G+D +
Sbjct: 3 SSAKSIDEVVEEIMRIHRSLPTRPAIDEVEAAKTLIRNVDNEEQSRLEAIARQTKSVDVPEELFMILQEIQKNLVYFQSKEQKGEALKLLDLENLHSVVDDLIQRASKCLPSNSHRSNNYSASTSATNLNSLSSMDSATFSGRGLNSLVTTTTNTSTTSSSLYHDKEPIK-ASELFTRDDSYLKKAKATFYVDGIRVGLRSGDLSTPQILDSSLKSPSTSGQDGEKLSLIKLAGLIEFSSKKGTRDINLQNKLMDQIEWLPDSIGKLSSLITLDLSENRIVALPATIGGLSSLTKLDLHSNRINELPESIGDLLSLVCLDLRGNQLTYLPPTFGRLIRIQELDLSSNRLSVLPESIGSLVSLKKLSVETNDIEEFPHTIGQCSSLKELRAEYNRLKALPEAVGRIGSLEILSVRYNNIKQLPTTMSSLSSLMELDISFNELESVPESLCFATTLVKMNISNNFADLQSLPRSIGNLENLEELDISNNQIRILPDSFRMLSRLRVLRVEGIPLEVPPRNIAEKGAQAVVQYMTELVAKRDVKPQPVKQKKTWAQICFFSRSNKRKRD----GLDYV 572
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L3A3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9450211.1}) (Fragment))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 365/565 (64.60%), Postives = 456/565 (80.71%), Query Frame = 0
Match: A0A6A4L3A3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9450211.1}) (Fragment))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 365/565 (64.60%), Postives = 456/565 (80.71%), Query Frame = 0
Query: 7 KTVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVEGGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASSILSEK----------EGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDIVTPMIVDSTLKSVT-STGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKR 560
K+VDEV+EEIMRIHRSLP RPG++EVEAAK LI+N+E E + +++ I++Q K ++VP+ELF + +MQ+ V FQSKE +EALKLLDL+N H FD+LIQRAS C+ S S LS S S + + + + S++ + + SS+LFTRDDTY+ +KAT++ DGIGGG+RSGD + P I+D++LKS + +G++G+KLSLIKLASLIEA S+KGT +LNL+ KLMD+++WLPDSIGKLSSL TLDLSEN I++LPATIGGLSSL KLDLHSN+IS+LPD+IG+LLSLV LDL NQL SLPSTFGRLVRLEELDLS+NHL VLP+SIGSL++L+ L++ETN+IEE PHTI +CSSL ELRAD NRLKALPEAVGRI+SLE+LS+RYNN+ +LPTTM+SL +L+EL++SFNELESVPESLC ATTLVK+N+SNNFADL LP SIGNLE+LEEL++SNNQIR LPDSF MLS+LRVLNVEGNPLE PP+ + +MGA+AVVQYMA+L+AKR+ K+ VKQKKSWAS+CFL SNKRKR
Sbjct: 6 KSVDEVVEEIMRIHRSLPPRPGIDEVEAAKTLIQNLEKEDQVKLEAITRQKKRAEVPEELFMVFLEMQKNLVYFQSKEQKQEALKLLDLENTHSFFDDLIQRASNCLSSNPHQPNYSFASTSSTNLS------SVANSASFSHSSLNSDSVVMDSKSSSSSLYFDKKPAKSSELFTRDDTYVKKAKATLYADGIGGGLRSGDALKPQILDTSLKSPSLKSGQEGEKLSLIKLASLIEAYSKKGTQELNLQSKLMDQVDWLPDSIGKLSSLITLDLSENHIISLPATIGGLSSLTKLDLHSNRISDLPDSIGELLSLVFLDLSANQLKSLPSTFGRLVRLEELDLSSNHLPVLPDSIGSLITLKKLNIETNDIEEFPHTIGNCSSLVELRADXNRLKALPEAVGRISSLEILSVRYNNIKQLPTTMSSLTNLKELNVSFNELESVPESLCFATTLVKINVSNNFADLRSLPRSIGNLEMLEELDISNNQIRFLPDSFRMLSRLRVLNVEGNPLEAPPKKIAEMGAQAVVQYMADLVAKRDAKTETVKQKKSWASICFLPNSNKRKR 564
BLAST of DCAR_002995 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TLL3 ((plant intracellular Ras-group-related LRR protein 4-like {ECO:0000313|RefSeq:XP_027079383.1, ECO:0000313|RefSeq:XP_027079384.1}))
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 375/583 (64.32%), Postives = 460/583 (78.90%), Query Frame = 0
Match: A0A6P6TLL3 ((plant intracellular Ras-group-related LRR protein 4-like {ECO:0000313|RefSeq:XP_027079383.1, ECO:0000313|RefSeq:XP_027079384.1}))
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 375/583 (64.32%), Postives = 460/583 (78.90%), Query Frame = 0
Query: 8 TVDEVIEEIMRIHRSLPARPGLEEVEAAKILIRNVENEQRSRIDFISKQVKGSQVPDELFKILQQMQRKWVDFQSKEDSREALKLLDLDNAHHVFDELIQRASVCVE--GGTKSGFEGVVSDSFEPLSYDYRESSEPLSYDYRAAGVRASS-----------------ILSEKEGVGGSSKLFTRDDTYLNMSKATVHGDGIGGGMRSGDI-VTPMIVDSTLKSVTSTGKDGDKLSLIKLASLIEASSRKGTLDLNLRGKLMDKIEWLPDSIGKLSSLTTLDLSENRILALPATIGGLSSLRKLDLHSNKISELPDTIGDLLSLVSLDLRGNQLASLPSTFGRLVRLEELDLSANHLHVLPESIGSLVSLRILDVETNNIEEIPHTIAHCSSLKELRADYNRLKALPEAVGRITSLEVLSLRYNNVSRLPTTMASLASLRELDLSFNELESVPESLCLATTLVKLNISNNFADLHHLPMSIGNLELLEELNMSNNQIRVLPDSFSMLSKLRVLNVEGNPLEVPPRSVTDMGAEAVVQYMAELIAKRNVKSLPVKQKKSWASMCFLSASNKRKRNASGSGVDAI 570
+++EV+ EIMR+HRSLP RP +EEVEAAK LIRNVE E ++RI+ IS+Q+K VPDELFKILQ+MQ+ V FQSKE REA+KLLDL++ H VFD+LIQRAS C+ G ++S S D S S + + + + +EK+ V +S+LF++DD+YL +KAT H +G+ G RSG+ TP IVDSTLK V + G++G+KLSLIKLASLIE SS+KGT +LNL+GKL D++EWLPDS+GKLSSL TLDLS+NRI+ALP TIGGLSSL+KLDLHSN+I+ELP++IGDLL+LVSL++ GNQL SLP+ F RLVRL+EL+LS+N L LP++IGSLVSL+ L+VETN+IEEIPHTI CSSLKEL+ADYNRLKALPEAVGRI SLEVL++RYNN+ +LPTTMASL SLRELD+SFNELE+VPESLC ATTLVK+NISNNFADL +LP SIGNLELLEEL+MSNNQIR+LPDSF MLS+LRVLNVEGNPLEVPP++V D GA+AVVQYM +L+AKR+ K PVKQKKSWA +CF S SNKRKRN G+D +
Sbjct: 7 SIEEVVAEIMRMHRSLPTRPAIEEVEAAKTLIRNVEKEDQARIEAISRQIKAKNVPDELFKILQEMQKNMVYFQSKEQQREAVKLLDLEHVHCVFDDLIQRASKCLSPSGSSQSNANNESLSYSTSYSRDSSSMSLSTSASFSGNSINSPATTTTNTSTATTSSSLSTFYNEKDIVK-ASELFSKDDSYLKKAKATFHVEGLRVGPRSGEFSTTPQIVDSTLKPVINVGQEGEKLSLIKLASLIEVSSKKGTRELNLQGKLKDQVEWLPDSLGKLSSLITLDLSQNRIVALPDTIGGLSSLQKLDLHSNRITELPESIGDLLNLVSLNVSGNQLRSLPAKFARLVRLQELNLSSNSLSALPDTIGSLVSLKTLNVETNDIEEIPHTIGQCSSLKELQADYNRLKALPEAVGRIESLEVLAVRYNNIRQLPTTMASLLSLRELDVSFNELEAVPESLCFATTLVKMNISNNFADLRYLPRSIGNLELLEELDMSNNQIRILPDSFRMLSRLRVLNVEGNPLEVPPKNVIDQGAQAVVQYMVDLVAKRDAKPQPVKQKKSWAQICFFSRSNKRKRN----GMDYV 584
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6Q1R9 | E-Value: 0.000e+0, PID: 67.66 | (Plant intracellular Ras-group-related LRR protein... [more] |
| A0A7J7I7E7 | E-Value: 0.000e+0, PID: 66.43 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5960... [more] |
| A0A4S4E8Z6 | E-Value: 0.000e+0, PID: 66.26 | (Uncharacterized protein {ECO:0000313|EMBL:THG1257... [more] |
| A0A2R6RJA8 | E-Value: 0.000e+0, PID: 65.85 | (Plant intracellular Ras-group-related LRR protein... [more] |
| A0A5J5BX43 | E-Value: 0.000e+0, PID: 66.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A5B6ZJW0 | E-Value: 0.000e+0, PID: 65.46 | (Putative plant intracellular Ras-group-related LR... [more] |
| A0A834G9V9 | E-Value: 0.000e+0, PID: 65.31 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7129... [more] |
| A0A5B6ZI65 | E-Value: 0.000e+0, PID: 66.43 | (Putative leucine-rich repeat family protein {ECO:... [more] |
| A0A6A4L3A3 | E-Value: 0.000e+0, PID: 64.60 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9450... [more] |
| A0A6P6TLL3 | E-Value: 0.000e+0, PID: 64.32 | (plant intracellular Ras-group-related LRR protein... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |