Resource Type:
Polypeptide
Name:
DCAR_002982
Identifier:
DCAR_002982.mRNA-protein
Sequence:
MTRLFRSKSCTTTANNHDLGSASMSHTPSHCVTNEDDEDEDEEEFEYFFE
NPITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSA
VETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLP
GKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEG
IFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDS
LTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMN
ARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIV
GLLSSCGDSPSKNVEGRLSSSNRSATECDHKETGDTNMLQSSTIGRLESE
REERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGT
EGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVWT*
Sequence Length:
499
Sequence Checksum:
4cdd8514621cf6e111b96e1fce7ad5ea
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002982, derives from mRNA, DCAR_002982. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZST0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520788.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 304/509 (59.72%), Postives = 366/509 (71.91%), Query Frame = 0
Match: A0A5J4ZST0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520788.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 304/509 (59.72%), Postives = 366/509 (71.91%), Query Frame = 0
Query: 1 MTRLFRSKSCTTTANNHDLGSASMSHTPSHCVTNEDDEDEDEEEF---EYFFENPITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSAT------ECDHKETGDTNMLQSSTIGRLESEREERLWTFNCK-DGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKS-GTIGFVDTTGDGEKVWT 498
MTRLFRSKSC + + ++S +PS +TN++D+DEDEEE YF +P+TTPFI P H + + ++ ++Q P I + + +ALRKSL VTCS A+D SSM+IG PTD RHVSHVTFD+FNG FLGLP+EL+P++P KVPSAS SVFGVSA SMQCSYDQ GNSVPTILL++Q+RLYSEGGLQAEGIFRINAEN++EE VR+ LN+GV+PRGIDVHCLAGLIKAWFRELP GVLDSLT EQV+HCNTEDECTQL+ LPPTE +LLDWAINLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLIMK LR+R + + LLS+C DSPSK S+SNR C +E N+ +S T+ RLES+ EE+ W+F K DG E PS+ S + C GY+N GIL +LS +GVR+L RHP+FQL+K VKKS G IG V++ + WT
Sbjct: 1 MTRLFRSKSCGFGRTTNPMFNSS-PPSPSLYLTNDEDDDEDEEEEEDDRYFANSPVTTPFISPEHRRHHHHRQETM--SHQFP-ILAILVTALRKSL-VTCSV--EAED-----VSSMDIGWPTDVRHVSHVTFDRFNG-FLGLPVELEPEVPRKVPSASASVFGVSAKSMQCSYDQRGNSVPTILLLVQERLYSEGGLQAEGIFRINAENSQEEYVRSQLNRGVMPRGIDVHCLAGLIKAWFRELPTGVLDSLTPEQVLHCNTEDECTQLVQLLPPTETALLDWAINLMADVVQHEHHNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLIMKILREREESAAMAKLLSTCTDSPSKKGNPHSSNSNRVVVCEQTFDGCSGEEPAIGNLWRSVTLDRLESDTEEKFWSFKSKSDGGEGYKSPSMRKR------GSLEDGCRG---GYENGEVVGILDRLSLRKGVRKLCRHPVFQLSKPVKKSGGGIGIVNSRERDGEAWT 487
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I5T8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5959951.1}))
HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 310/527 (58.82%), Postives = 359/527 (68.12%), Query Frame = 0
Match: A0A7J7I5T8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5959951.1}))
HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 310/527 (58.82%), Postives = 359/527 (68.12%), Query Frame = 0
Query: 1 MTRLFRSKSCTTTANNHDLGSASMSHTPSHCVTNED----------DEDEDEEEFEYFFENPITTPFIGPNHHHYENEEEQRSPNNN-------QLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSATECDHKETGD---------TNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGY---DNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVWT 498
MTRLFRSKSC + ++S TPS + N+ +E+E+EE+ EY NP+TTPFI + Y ++ + NNN Q P I + + LRKSL VTCS ++D SS M+IG PTD RHVSHVTFD+FNG FLGLPLELQPQLP KVPSASVSVFGVSANSMQCSYDQ GNSVP ILLMMQ+RLYSEGGLQAEGIFRINAEN++EE VRN LNKGVVP GIDVHCLAGLIKAWFRELPAGVLD LT EQVMHCN EDECTQL+ LPPTEA+LLDWAINLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLIMKTLR+R + + LL SC DSP +G SSN S+ H +T D N+ S + R ES+ E+ +F + D+ S+ +PV S K R N G DNR EGI KLS +GVR+L RHP+FQL+K KKS ++G VD+ G G + W
Sbjct: 1 MTRLFRSKSCGVGRTTGSMFNSS-PPTPSLYLPNQGHDDDDSEEEEEEEEEEEDEEYLANNPVTTPFIISPENRYRRNQQHNNNNNNHHHHHHPQFP-IVDILVAVLRKSL-VTCSVERGGEEDMSS----MDIGWPTDVRHVSHVTFDRFNG-FLGLPLELQPQLPPKVPSASVSVFGVSANSMQCSYDQRGNSVPMILLMMQQRLYSEGGLQAEGIFRINAENSQEEYVRNQLNKGVVPHGIDVHCLAGLIKAWFRELPAGVLDCLTPEQVMHCNAEDECTQLLKLLPPTEAALLDWAINLMADVVQHENHNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLIMKTLREREESHAQPRLLPSCRDSPRN--KGDSQSSNPSSV-FSHGQTLDGHASKGPPTGNLFGSIILDRSESDCLEKFRSFQDDNDVAEDWYESVSCRSSPV--SGKRRNLTNGSRGEYNDDNREVEGIFDKLSLKKGVRKLCRHPVFQLSKPAKKSDSLGIVDSRGRGGEAWA 514
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EKK2 ((Uncharacterized protein {ECO:0000313|EMBL:THG17120.1}))
HSP 1 Score: 519.62 bits (1337), Expect = 1.752e-179
Identity = 290/473 (61.31%), Postives = 330/473 (69.77%), Query Frame = 0
Match: A0A4S4EKK2 ((Uncharacterized protein {ECO:0000313|EMBL:THG17120.1}))
HSP 1 Score: 519.62 bits (1337), Expect = 1.752e-179
Identity = 290/473 (61.31%), Postives = 330/473 (69.77%), Query Frame = 0
Query: 47 YFFENPITTPFIGPNHHHYENEEEQRSPNNN---------QLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSATECDHKETGD---------TNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGY---DNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVWT 498
Y NP+TTPFI + Y ++ + NNN Q P I + + LRKSL VTCS ++D SS M+IG PTD RHVSHVTFD+FNG FLGLPLELQPQLP KVPSASVSVFGVSANSMQCSYDQ GNSVP ILLMMQ+RLYSEGGLQAEGIFRINAEN++EE VRN LNKGVVP GIDVHCLAGLIKAWFRELPAGVLD LT EQVMHCN EDECTQL+ LPPTEA+LLDWAINLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLIMKTLR+R + + LL SC DSP +G SSN S+ H +T D N+ S + R ES+ E+ +F + D+ S+ +PV S K R N G DNR EGI KLS +GVR+L RHP+FQL+K KKS ++G VD+ G G + W
Sbjct: 38 YLANNPVTTPFIISPENRYRRNQQHNNNNNNNNHHHHHHPQFP-IVDILVAVLRKSL-VTCSVERGGEEDMSS----MDIGWPTDVRHVSHVTFDRFNG-FLGLPLELQPQLPPKVPSASVSVFGVSANSMQCSYDQRGNSVPMILLMMQQRLYSEGGLQAEGIFRINAENSQEEYVRNQLNKGVVPHGIDVHCLAGLIKAWFRELPAGVLDCLTPEQVMHCNAEDECTQLLKLLPPTEAALLDWAINLMADVVQHENHNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLIMKTLREREESHAQPRLLPSCRDSPRN--KGDSQSSNPSSV-FSHGQTLDGHASKGPPTGNIFGSIILDRSESDCLEKFRSFQDDNDVAEDWYESVSCRSSPV--SGKRRNLTNGSRGEYNDDNREVEGIFDKLSLKKGVRKLCRHPVFQLSKPAKKSDSLGIVDSRGRGGEAWA 498
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E7D5 ((Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein {ECO:0000313|EMBL:GFY81557.1}))
HSP 1 Score: 503.442 bits (1295), Expect = 2.542e-173
Identity = 283/494 (57.29%), Postives = 339/494 (68.62%), Query Frame = 0
Match: A0A7J0E7D5 ((Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein {ECO:0000313|EMBL:GFY81557.1}))
HSP 1 Score: 503.442 bits (1295), Expect = 2.542e-173
Identity = 283/494 (57.29%), Postives = 339/494 (68.62%), Query Frame = 0
Query: 1 MTRLFRSKSCTTTANN----HDLGSASMSHTPSHCVTNEDDEDEDEEEFEYFFEN--PITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEG------RLSSSNRSATECDHKETGDTNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSG 482
MTRLFRSKSC N H + + P E++E+E+EEE E ++ P+TTPFI Y + S +N+Q P + +A+ LRKSL VTCS + +SSM+IG PTD RHVSHVTFD+F+G FLGLP+EL+P+LP KVPSASVSVFGVSANSMQCS+D++GNSVP ILLMMQKRLYSEGGLQAEGIFRINAEN++EE VRN LNKGVVPRGIDVHCLAGLIKAWFRELPAGVLD LT EQVMHCNTEDECTQL+ LPPTEA+LLDWAINLMADVVQYE NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN L+TLI+KT+R+R L SC DSP + R+ S ++ C + + +S TI RL S+ ++ W+F ++ E Y + + K K+ N YD+ EGI +L +GVR+L RHP+F L+K VKK G
Sbjct: 1 MTRLFRSKSCGVGRTNGTMFHLSPPSPSPYIPKDGKHEEEEEEEEEEEEEEEEDDASPVTTPFIISPERRYRQRHREES-HNHQFP-VLDILAAVLRKSL-VTCSV------EREDVASSMDIGWPTDVRHVSHVTFDRFHG-FLGLPVELEPELPRKVPSASVSVFGVSANSMQCSHDKNGNSVPMILLMMQKRLYSEGGLQAEGIFRINAENSQEEYVRNQLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDCLTPEQVMHCNTEDECTQLVKLLPPTEAALLDWAINLMADVVQYENHNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLRTLIIKTIREREVSAAQPRLPPSCSDSPGNKGDPHSSNPRRVLSHGQTFDGCSGEGPAVGKLFRSVTIDRLGSDSMKKFWSFQSENDAEEGYESA--SDKNSTVMGKKENSENGLRGHYDDGEIEGIFDRLGLKKGVRKLCRHPVFHLSKPVKKPG 482
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QMB8 (Rho-GAP domain-containing protein {ECO:0000259|PROSITE:PS50238})
HSP 1 Score: 502.671 bits (1293), Expect = 5.668e-173
Identity = 289/511 (56.56%), Postives = 351/511 (68.69%), Query Frame = 0
Match: A0A5N6QMB8 (Rho-GAP domain-containing protein {ECO:0000259|PROSITE:PS50238})
HSP 1 Score: 502.671 bits (1293), Expect = 5.668e-173
Identity = 289/511 (56.56%), Postives = 351/511 (68.69%), Query Frame = 0
Query: 1 MTRLFRSKSC----TTTANNHDLGSASMSHTPSHCVTNEDDEDEDEEEFEYFFENPI-TTPFIGPNHH-HYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVE------GRLSSSNRSATECDHKETGDTNMLQSSTIGRLESEREERLWTF--NCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVW 497
MTRLFRSKSC T N + + + ED++ EDE+ + PI TTPFI P EN E ++ N Q P + + +ALRKSLLVTCS ++D SS M+I PT+ RHVSHVTFD+FNG FLGLP EL+P++P +VPSASVSVFGVSA SMQCSYD GNSVPTILLMMQKRLYSEGGL AEGIFRINAEN++EENVR+ LNKGVVP GIDVHCLAGLIKAW RELP GVLDS+T EQV+HCNTED+C +LI LPPTEA+LL WAINLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLI+KT+R+R LSS D PS N + GR +SS + + C ++N L+++T+ RLES+ E+LW+F N EE +Y +++ T D + N S GYD+ L+F +GVR+L RHP+FQL+K KK+G++G V+T G G + W
Sbjct: 1 MTRLFRSKSCGLVGLTEFNPNPVSPFYNNEDEQEDEEEEDEQLEDEDYGDDVLVEPISTTPFITPGSRTGAENSEGRQHCNGAQFP-VLDILVAALRKSLLVTCSV---EREDVSS----MDISWPTEVRHVSHVTFDRFNG-FLGLPTELEPEVPQRVPSASVSVFGVSAKSMQCSYDARGNSVPTILLMMQKRLYSEGGLSAEGIFRINAENSQEENVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSVTPEQVLHCNTEDDCVELIKLLPPTEAALLGWAINLMADVVQHEQFNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTIREREKSVDQDRRLSSYSDFPSHNDDPISSNLGREASSEQPSNTCATHGRTNSNFLRTTTLNRLESDTMEKLWSFEKNSNGEEELEY----MSSDNSPTYEMGDLE-NGSRSGYDSG------DWLNFRKGVRKLCRHPVFQLHKPAKKNGSLGIVNTRGGGGETW 491
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3H1I5 ((PAK-box/P21-Rho-binding protein {ECO:0000313|EMBL:OMO64213.1}))
HSP 1 Score: 501.516 bits (1290), Expect = 1.984e-172
Identity = 284/525 (54.10%), Postives = 348/525 (66.29%), Query Frame = 0
Match: A0A1R3H1I5 ((PAK-box/P21-Rho-binding protein {ECO:0000313|EMBL:OMO64213.1}))
HSP 1 Score: 501.516 bits (1290), Expect = 1.984e-172
Identity = 284/525 (54.10%), Postives = 348/525 (66.29%), Query Frame = 0
Query: 1 MTRLFRSKSC----TTTANNHDLGSASMSHTPSHCVTNEDDEDEDEEEFEY-------------FFENPI-TTPFIGPNHHHYENE---EEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSATE------CDHKETGDTNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVWT 498
MTRLFRSKSC T NN +P T D+ED EE + + PI TTPFI P + + + + +NNQ P F + +AL + LVTCS V T DD SS M+I PT+ RHVSHVTFD+FNG FLGLP EL+P++P KVPSAS SVFGVSA SMQCSYD GNSVPTILLMMQKRLY+EGGL+AEGIFRINA+N++EE VR+ LNKGVVPRGIDVHCLAGLIKAW RELP+GVLDSLT EQVMHCNTE++CT+L+ LPPTEA+LLDW INLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLI+KTL +R + LL SC DSP++ + +S N + C+ +E L+++T+ RLE +E+LW+F+ DGEE ++ +S C + ++RG +LS +GVRRL RHP+FQL+K+ KK+ +G V+T G G + WT
Sbjct: 1 MTRLFRSKSCGLVGVTEFNN-------APPSPFFHGTKSDNEDASVEEEDEEEEEFEEEEEESDYDRIPIATTPFISPTARYGGGQGRNSDSTTKDNNQFP--FLDILAALLRKSLVTCS-VNT--DDVSS----MDISWPTEVRHVSHVTFDRFNG-FLGLPTELEPEVPRKVPSASASVFGVSAQSMQCSYDDRGNSVPTILLMMQKRLYAEGGLKAEGIFRINADNSQEEYVRDKLNKGVVPRGIDVHCLAGLIKAWLRELPSGVLDSLTPEQVMHCNTEEDCTELVKLLPPTEAALLDWGINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLHEREESVAKDRLLPSCSDSPTRTTDINSASINSGVSREPNPYACESEEPACAKFLRAATLSRLEWGPKEKLWSFSKSDGEEE---------LESLSDNSMPNACEMATVENESRGAYDSGDRLSLRKGVRRLCRHPVFQLSKSAKKTRNMGIVNTRGGGGEAWT 499
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0US79 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Kaladp0081s0409.1.v1.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 3.225e-172
Identity = 267/453 (58.94%), Postives = 324/453 (71.52%), Query Frame = 0
Match: A0A7N0US79 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Kaladp0081s0409.1.v1.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 3.225e-172
Identity = 267/453 (58.94%), Postives = 324/453 (71.52%), Query Frame = 0
Query: 49 FENPITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSATECD----HKETGDTNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSP--EGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEK 495
F++P+ TPF P +N+ S N+Q P + + + +ALRKSL VTCS VET D ++EI PT+ RHVSHVTFD+FNG FLGLP ELQP++P +VPSAS SVFGVSA SMQCSYD+ GNSVPTILLMMQKRLYSEGGLQAEG+FRI AEN++EE VR+ LNKG+VP GIDVHCLAGLIKAW RELP GVLDSLT EQVM+CN+EDECT L+ LPPTEA+LLDWAINLMADVV YE NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLI KTLR R + T LLSSC + +K+ S+++ S CD + E N L+S+T+ +LES+ EE+ W+F D E L T + K +N +GY+N +E IL +LSF+RGV++L RHP+FQL++A K+S V G+G +
Sbjct: 51 FKSPVLTPFASPAAVSNQNQ----SGGNSQYP-VLTILVAALRKSL-VTCS-VETEDLD------ALEISYPTNVRHVSHVTFDRFNG-FLGLPAELQPEVPKRVPSASASVFGVSAQSMQCSYDERGNSVPTILLMMQKRLYSEGGLQAEGVFRITAENSQEEFVRSQLNKGIVPPGIDVHCLAGLIKAWLRELPTGVLDSLTPEQVMNCNSEDECTSLVKLLPPTEAALLDWAINLMADVVNYEHRNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLIEKTLRGREEAFTTANLLSSCSSTLTKH-----SANSYSWKTCDETLEYNEASYGNFLRSATLDKLESDTEEKFWSFKDNDKAED------LTESTSDLFAPKSENLDNKRRGDGYNNSESESILDRLSFSRGVKKLCRHPVFQLSRAFKRSAGAEIVHARGNGRE 478
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DSB2 ((Rho GTPase activating protein with PAK-box/P21-Rho-binding domain {ECO:0000313|EMBL:EOX95615.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 2.104e-171
Identity = 268/457 (58.64%), Postives = 321/457 (70.24%), Query Frame = 0
Match: A0A061DSB2 ((Rho GTPase activating protein with PAK-box/P21-Rho-binding domain {ECO:0000313|EMBL:EOX95615.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 2.104e-171
Identity = 268/457 (58.64%), Postives = 321/457 (70.24%), Query Frame = 0
Query: 51 NPI-TTPFIGPNHHHYENE---EEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSN------RSATECDHKETGDTNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSGTIGFVDTTGDGEKVW 497
NPI TTPFI P +E S +NNQLP F + +AL + LVTCS V+T + SSM+I PT+ RHVSHVTFD+FNG FLGLP EL+P +P +VPSAS SVFGVSA SMQCSYD GNSVPTILLMMQK LY+EGGL+AEGIFRINAEN+ EE VR+ LNKGVVP GIDVHCLAGLIKAW RELP+GVLDSLT EQV+HCNTED+CT+L+ LPPTEA+LLDWAINLMADVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLI+KTL +R + LL SC DSP+ + + +++N ++ C KE L+++T+ RLE EE LW+F DGEE S +T + + +C GYDN +LS +GVRRL RHP+FQL+K+ KK+ +G V+T G G + W
Sbjct: 59 NPIATTPFISPTSRFRGSEGRNSNSTSKDNNQLP--FLDILAALLRKSLVTCS-VDT------NDVSSMDISWPTEVRHVSHVTFDRFNG-FLGLPTELEPDVPRRVPSASASVFGVSAKSMQCSYDDRGNSVPTILLMMQKHLYAEGGLKAEGIFRINAENSHEEYVRDKLNKGVVPHGIDVHCLAGLIKAWLRELPSGVLDSLTPEQVVHCNTEDDCTELVKLLPPTEAALLDWAINLMADVVQHEQFNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLCEREELAAKDRLLPSCSDSPTDITDTQNATANGGVFREQALDACASKEPATAKFLRAATLSRLECGPEEELWSFRKSDGEEEFKSLSDNSTPNACEMGTVENECRG---GYDNG------DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLGIVNTRGGGGEAW 496
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R7J5 ((Rho GTPase-activating protein {ECO:0000313|EMBL:PSS23510.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 4.390e-171
Identity = 289/494 (58.50%), Postives = 344/494 (69.64%), Query Frame = 0
Match: A0A2R6R7J5 ((Rho GTPase-activating protein {ECO:0000313|EMBL:PSS23510.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 4.390e-171
Identity = 289/494 (58.50%), Postives = 344/494 (69.64%), Query Frame = 0
Query: 1 MTRLFRSKSCT---TTANNHDLGSASMS-HTPSHCVTNEDDEDEDEEEFEYFFENPITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSN------RSATECDHKETGDT--NMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKSG 482
MTRLFRSKSC +T L S+S + P E++E+E+EEE E ++P+TTPFI Y + + S +N+Q P I +A+AL+KSL VTCS ++D +SS M+IG PTD RHVSHVTFD+FNG FLGLP+EL+P+L KVPSASV VFGVSANSMQCS+DQ GNSVPTILLMMQKRLYSEGGLQAEGIFRINAEN++E+ VRN LNKGVVP GIDVHCLAGLIKAWFRELPAGVLD LT EQVMHCNTEDECTQL+ LPPTEA+LLDWAINLMADVVQYE NKMNA NIAMVFAPNMTQMADPLTALIHAVQVMN L+TLI+KTLR+R + L SC D P +G SSN R T D G + +S TI R S+ E+ W+F ++ E Y ++ ++ ++ N D+ EGI +L +GVR+L RHP+FQL+K VKKSG
Sbjct: 1 MTRLFRSKSCGGGWSTGTMFHLSPPSLSPYIPKDGKQEEEEEEEEEEEEEDDEDSPVTTPFIISPERRYRHRPREES-HNHQFP-ILDILAAALKKSL-VTCS---VEREDVASS---MDIGWPTDVRHVSHVTFDRFNG-FLGLPVELEPELLRKVPSASVRVFGVSANSMQCSHDQRGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENSQEDYVRNQLNKGVVPHGIDVHCLAGLIKAWFRELPAGVLDCLTPEQVMHCNTEDECTQLLKLLPPTEAALLDWAINLMADVVQYENHNKMNAHNIAMVFAPNMTQMADPLTALIHAVQVMNFLRTLIIKTLREREKSASQPRLPPSCSDYPRN--KGDPHSSNPRRVLSRGQTFDDRSGEGPAVCKLFRSVTIDRFGSDSMEKFWSFPSENDAEEGY--ESVSDESSTVMGKRENSENGLRGQCDDGEVEGIFDRLGLKKGVRKLCRHPVFQLSKPVKKSG 480
BLAST of DCAR_002982 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I2W6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61283.1}))
HSP 1 Score: 493.812 bits (1270), Expect = 8.166e-170
Identity = 265/437 (60.64%), Postives = 317/437 (72.54%), Query Frame = 0
Match: F6I2W6 ((Uncharacterized protein {ECO:0000313|EMBL:CCB61283.1}))
HSP 1 Score: 493.812 bits (1270), Expect = 8.166e-170
Identity = 265/437 (60.64%), Postives = 317/437 (72.54%), Query Frame = 0
Query: 51 NPITTPFIGPNHHHYENEEEQRSPNNNQLPQIFSSVASALRKSLLVTCSAVETAQDDFSSSSSSMEIGCPTDARHVSHVTFDKFNGCFLGLPLELQPQLPGKVPSASVSVFGVSANSMQCSYDQSGNSVPTILLMMQKRLYSEGGLQAEGIFRINAENTEEENVRNHLNKGVVPRGIDVHCLAGLIKAWFRELPAGVLDSLTAEQVMHCNTEDECTQLIARLPPTEASLLDWAINLMADVVQYEILNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLIMKTLRQRGDYNTIVGLLSSCGDSPSKNVEGRLSSSNRSAT------ECDHKETGDTNMLQSSTIGRLESEREERLWTFNCKDGEESDYGPSILATKTPVTCSSKDRKCNNSPEGYDNRGTEGILSKLSFTRGVRRLYRHPLFQLNKAVKKS 481
NPI+TPFIG + Q +Q P I + +ALRKSL VTCS ++D S+ ++I PT+ +HVSHVTFD+FNG FLGLP+EL+P++P +VPSAS SVFGVSA SMQCSYDQ GNSVPTILLM+QKRLYS+GGLQAEGIFRINAEN +EE VRN LNKG++PRGIDVHCLAGLIKAW RELP GVLDSLT EQVMHCNTEDECTQL+ LPPTEA+LLDW INLM DVVQ+E NKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLIMKTL++R + LLSSC DSPS + S+SNR+ + C +E ++ L+ + RLES+ EE+ W+ K E +Y SI + +PV + K N Y+N EGIL +LS +GVR+L RHP+F L+K VKK+
Sbjct: 46 NPISTPFIGAGSRESGSANGQS--QGHQFP-ILPILLAALRKSL-VTCS---VEREDVSA----VDISWPTNVQHVSHVTFDRFNG-FLGLPVELEPEVPRRVPSASASVFGVSAQSMQCSYDQRGNSVPTILLMLQKRLYSQGGLQAEGIFRINAENGQEEYVRNQLNKGLLPRGIDVHCLAGLIKAWLRELPTGVLDSLTPEQVMHCNTEDECTQLVKLLPPTEAALLDWTINLMTDVVQHEHHNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLIMKTLQEREESAAKSRLLSSCTDSPSSKDDPHSSNSNRNISCEQTQDGCAPEEHTISDFLKPDALDRLESDIEEKFWSSQQKSEAEEEYQ-SISGSSSPVVGEAGTLK-NRCTGEYENGEVEGILDRLSLRKGVRKLCRHPIFHLSKPVKKT 468
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZST0 | E-Value: 0.000e+0, PID: 59.72 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8520... [more] |
| A0A7J7I5T8 | E-Value: 0.000e+0, PID: 58.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5959... [more] |
| A0A4S4EKK2 | E-Value: 1.752e-179, PID: 61.31 | (Uncharacterized protein {ECO:0000313|EMBL:THG1712... [more] |
| A0A7J0E7D5 | E-Value: 2.542e-173, PID: 57.29 | (Rho GTPase activating protein with PAK-box/P21-Rh... [more] |
| A0A5N6QMB8 | E-Value: 5.668e-173, PID: 56.56 | Rho-GAP domain-containing protein {ECO:0000259|PRO... [more] |
| A0A1R3H1I5 | E-Value: 1.984e-172, PID: 54.10 | (PAK-box/P21-Rho-binding protein {ECO:0000313|EMBL... [more] |
| A0A7N0US79 | E-Value: 3.225e-172, PID: 58.94 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A061DSB2 | E-Value: 2.104e-171, PID: 58.64 | (Rho GTPase activating protein with PAK-box/P21-Rh... [more] |
| A0A2R6R7J5 | E-Value: 4.390e-171, PID: 58.50 | (Rho GTPase-activating protein {ECO:0000313|EMBL:P... [more] |
| F6I2W6 | E-Value: 8.166e-170, PID: 60.64 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6128... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |