MDCCISYNKISAFTSSFSSFSTGPVVFPGNRRRVIVAATSSDSHCDFGSL
NTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLS
LGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQC
IYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWAT
TNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRL
SLSDFWSYGLNLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEV
LQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVL
EAVAFGSFLWDSEEYVDSAYKLKQN*
| Relationships |
|---|
| The polypeptide, DCAR_004747, derives from mRNA, DCAR_004747. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7AH65 ((Putative F21O3.2 protein {ECO:0000313|EMBL:MPA55435.1}))
HSP 1 Score: 497.278 bits (1279), Expect = 5.633e-174
Identity = 253/416 (60.82%), Postives = 307/416 (73.80%), Query Frame = 0
Query: 1 MDCCISYNK-------------------------------ISAFTSSFSSFSTG-----PVVFPG--NRRRVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGS--RLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDCC+SYN + +F S+F FS P+ G NRR +I A++ SHC+F SLNTPLE +S +GK LS VLQNDR+ FH AVA QL L + RDEA+AR L+ GSS+A LHRRIAE+KE E Q A+EDV+YMLI YKFS+IRVHLVPRLS+CIYNGRLEI+P++DWELESIHS EVLEMI+E+L V+GW+A+SNVT NWATT + ++ LCRVYAASILYGYFLKSA++RH L+LSL+++NYDL ++GS L LS+ S GL N+AFGR + T+VG+ SC+Q K EKL YVMGFDPE LQMCAKPKSKEA +L+EKH CALFGDEK+GL+E+DEVISTSL+S KR VLEAVAFGSFLWD+EEYVDS YKL +N
Sbjct: 1 MDCCLSYNNSSVLQSLPPTVKTVKSSSQGFHRLLSTHKLPVPSFNSTFH-FSGDRRFGRPISLSGRSNRRALIAVASAEASHCEFSSLNTPLEPKSLAGKFLSGVLQNDREYFHVAVAKQLVQLAAHRDEAVARMNLTFGSSEACLHRRIAELKENECQAAVEDVIYMLIFYKFSDIRVHLVPRLSRCIYNGRLEIWPARDWELESIHSFEVLEMIREYLTTVVGWKANSNVTENWATTAVRRIHLCRVYAASILYGYFLKSATLRHHLDLSLSEVNYDLGISSGSDTHLPLSELCSCGLKNIAFGRTSSVRSTSVGQESCSQGKTREKLRCYVMGFDPETLQMCAKPKSKEAADLVEKHICALFGDEKTGLLETDEVISTSLSSLKRMVLEAVAFGSFLWDAEEYVDSVYKLNEN 415
Match: A0A5B7AGK6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55434.1}) (Fragment))
HSP 1 Score: 493.812 bits (1270), Expect = 1.494e-172
Identity = 248/376 (65.96%), Postives = 302/376 (80.32%), Query Frame = 0
Query: 10 ISAFTSSFSSFSTG-----PVVFPG--NRRRVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGS--RLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
I +F+S+F+ FS P+ F G NRR + A S SHC+F SLNTPLE +S +GK LS VLQNDR+ F+ AVA QL L ++RDEA+AR L LGSS+A LHRRIAE+KE E Q ++EDV+YMLI YKFS+IRVHLVPRLS+CIYNGRLEI+P++DWELESIHS EVLEMI+E+L V+GW+A+SNVT NWATT + ++ LCRVYAASILYGYFLKSA++RH L+LSL+++NYDL ++GS L LS+ S GL N+AFGR + T+VG+ SC+Q KK EKL YVMGFDPE LQMCAKPKSKEA +L+EKH CALFGDEK+GL+E+DEVISTSL+S KR VLEAVAFGSFLWD+EEYVDS YKL +N
Sbjct: 45 ILSFSSTFN-FSGDRRFGRPISFSGRRNRRALNAVAGSGTSHCEFSSLNTPLEPKSLAGKFLSSVLQNDREYFNVAVAKQLVELAADRDEAVARMNLRLGSSEACLHRRIAELKEHECQASVEDVIYMLIFYKFSDIRVHLVPRLSRCIYNGRLEIWPARDWELESIHSFEVLEMIREYLTTVVGWKANSNVTENWATTAVRRIHLCRVYAASILYGYFLKSATLRHHLDLSLSEVNYDLGISSGSDTHLPLSELCSCGLKNIAFGRTSSVRSTSVGQESCSQGKKREKLRCYVMGFDPETLQMCAKPKSKEAADLVEKHICALFGDEKTGLLETDEVISTSLSSLKRMVLEAVAFGSFLWDAEEYVDSVYKLNEN 419
Match: A0A7J0GRA4 ((Phosphoserine aminotransferase, putative {ECO:0000313|EMBL:GFZ13337.1}))
HSP 1 Score: 468.003 bits (1203), Expect = 6.921e-163
Identity = 229/348 (65.80%), Postives = 278/348 (79.89%), Query Frame = 0
Query: 29 GNRRRVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
G RR+VIVAA S C+F LNTPLE +SP+G+LLSRVLQ+D + F AV QLE L S+RD+A+ R L L S +A LH RIAE++ QE Q AIEDVMYM++ +KF EI VHLVPRLS C+YNGRLEI+PS+DW+LESIHS EVLEMI+EHL AVIGWR+DS+VT+NWATT I +L LC+VYAASILYGYFLKSAS+RH LEL+L N+DL + L L + WS+GL + AFG V + T+VG+ SC+Q K+E+L YVMGF+PE LQMCAKPK+KEA +LI KHSCALFGDEK+GL+E+DEVI TSL+S KR VLEAVAFGSFLWD+EEYVD+ YKL +N
Sbjct: 48 GCRRKVIVAA----SGCEFSGLNTPLEPKSPAGRLLSRVLQSDVELFRGAVDKQLEGLASDRDDAIGRMNLRLDSDEAFLHWRIAELRGQECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCVYNGRLEIWPSRDWQLESIHSFEVLEMIREHLTAVIGWRSDSSVTDNWATTQIPRLHLCQVYAASILYGYFLKSASLRHHLELNLAKANHDLGMTYSNPLPLPELWSFGLKDTAFGYVSSTRSTSVGQESCSQGMKHEELRGYVMGFNPETLQMCAKPKTKEAASLIAKHSCALFGDEKTGLIETDEVIQTSLSSLKRMVLEAVAFGSFLWDTEEYVDTVYKLTEN 391
Match: A0A7J7HPR6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5954649.1}))
HSP 1 Score: 469.159 bits (1206), Expect = 1.438e-161
Identity = 246/436 (56.42%), Postives = 299/436 (68.58%), Query Frame = 0
Query: 1 MDCCISYN------------KISAFTSSFSSF-----STGPVVFPGNRR---RVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHR----------------------------------------RIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MD C+SYN K + SS + + F G+RR R ++A S+D C+F SLNTPLE +S +GK LSRVLQND FH AV QLE L ++RDEA+AR LSL S +A+LHR RIAE++E E + A+EDVMYML+ +KFSEIRVHLVPRLS+CIYNGRLEI+PSKDWELESIH+ EVLEMI+EHL AVIGWRADSNVT+NWATT I +L+LC VYAASILYGYFLKS S+RH LELS+ + N DL + L S+ WS G+ N+AFGR+ N +VG+ SC++ KK EKL Y+MGFDPE LQM AKPK+KE +NL+EKHSCALFGDEK+GL+E++EVI TSL+S KR VLEAVAFGSFLWD+EEYVD+ YKLK+N
Sbjct: 71 MDYCLSYNIPFVLESLPSAVKKNTLKSSSQGLRRLVSTNNKLHFFGDRRFKRRALIAVASAD--CEFSSLNTPLEPKSFAGKFLSRVLQNDLDYFHVAVGKQLEQLAADRDEAVARMNLSLASDEAALHRVKDRMSKQQIGTGRRVGNLYVVESLHLPMATSQTAFSSFQRIAELREHECEIAVEDVMYMLVLHKFSEIRVHLVPRLSRCIYNGRLEIWPSKDWELESIHNFEVLEMIREHLTAVIGWRADSNVTDNWATTQIPRLQLCGVYAASILYGYFLKSISLRHHLELSVAEANCDLGITFRNPLPQSELWSCGIKNIAFGRISNTQSISVGQDSCSRGKKREKLRRYIMGFDPETLQMRAKPKTKEVVNLVEKHSCALFGDEKTGLIETNEVILTSLSSLKRIVLEAVAFGSFLWDTEEYVDAVYKLKEN 504
Match: A0A2R6QSM7 ((UV-B-induced protein {ECO:0000313|EMBL:PSS14109.1}))
HSP 1 Score: 462.225 bits (1188), Expect = 1.565e-160
Identity = 234/394 (59.39%), Postives = 285/394 (72.34%), Query Frame = 0
Query: 1 MDCCISYNKISAFTSSFSSF--STGPVVFPG----------------NRRRVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDCC S + A S S+ + P PG RR ++AA S C+F LNTPLE +SP+G+LLS VLQND + F AV QLE L S+RD+A+ R LSL S +A LHRRIAE++ +E Q AIEDVMYM++ +KF EI VHLVPRLS C+YNGRLEI+PS+DW+LESIHS EVLEMI+EHL AVIGWR+DS VT+NWA T I +L LCRVYAASILYGYFLKSAS+RH LEL+L + NYDL + L L + W+ GL + AFG + + T+VG+ SC+Q K E+L YVM FDPE L+MCAKPK+ EA +L+EKHSCALFGDEK+GL+E+DEVI TSL S KR VLEAVAFGSFLWD+EEYVD+ YKL +N
Sbjct: 1 MDCCFSRYNLFALQSLPSAVKSPSSPRGLPGIVLAHKHPIPTRRVGFGCRRTVIAAASG---CEFSGLNTPLEPKSPAGRLLSGVLQNDVELFRDAVDKQLEGLASDRDDAIGRMNLSLDSDEAFLHRRIAELRGRECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCVYNGRLEIWPSRDWQLESIHSFEVLEMIREHLTAVIGWRSDSRVTDNWAKTQIPRLHLCRVYAASILYGYFLKSASLRHHLELNLAEANYDLGITYSNPLPLPELWACGLKDNAFGYINSTRSTSVGQESCSQGMKREELRGYVMRFDPETLRMCAKPKTMEAASLLEKHSCALFGDEKTGLIETDEVIRTSLLSLKRMVLEAVAFGSFLWDTEEYVDTVYKLTEN 391
Match: A0A3Q7I236 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g057580.3.1}))
HSP 1 Score: 451.44 bits (1160), Expect = 2.473e-156
Identity = 232/393 (59.03%), Postives = 281/393 (71.50%), Query Frame = 0
Query: 1 MDCCISYNKIS-----------------AFTSSFSSFSTGPVVFPGNRRRVIVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGLNLA-FGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDC +SY KIS F S+ SSF T V G RR + V AT S S C+FG LN PLE +P+G+LLS +L NDRK FH AV QLE L +ERDEA+AR LSLG+ +A LHRRIAE+KE E QT++ED+MYMLISYKFS IRVHL+PRLS+C+YNGRLEI+P KDWELESIHS EVLEM++EHL +V+GW+ SNV +NW T + K +LC+VY AS+LYGYFLKSAS+RH LE L +N L + +L LS S G + FG + T+V + + KK +KL YVM FDPE+LQMCAKPKSKEA+NLIEKHS ALFGD+ + LV SD+VI TSLAS KR VLEA+AFGSFLWD+EEYV + YKLK+N
Sbjct: 1 MDCGLSYTKISLHQSLPLAVKTCLSSSTCFLSNNSSFGTSSV---GFRRSLFVVATGSSSKCEFGGLNAPLEPATPTGRLLSTLLLNDRKYFHVAVQKQLEKLANERDEAVARMNLSLGTDEAFLHRRIAEVKELECQTSVEDIMYMLISYKFSGIRVHLIPRLSKCMYNGRLEIWPCKDWELESIHSCEVLEMVREHLTSVLGWKEKSNVADNWTPTEVQKFKLCQVYVASVLYGYFLKSASLRHHLEKKLDHINPYLDLASYKQLLLSTIQSLGSEIVPFGCIGGTRSTSVSQIPLLREKKQDKLKYYVMNFDPEMLQMCAKPKSKEALNLIEKHSYALFGDKNTVLVASDDVILTSLASLKRIVLEAIAFGSFLWDAEEYVRTVYKLKEN 390
Match: M1AGU9 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400022519}))
HSP 1 Score: 445.277 bits (1144), Expect = 6.221e-154
Identity = 234/392 (59.69%), Postives = 282/392 (71.94%), Query Frame = 0
Query: 1 MDCCISYNKISAFTS---------------SFSSFSTGPVVFPGNRRRV-IVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGLNLA-FGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDC +SY KIS S +F++ S G V G RR + +VA+ SS S C+F LN PLE +P+G+LLS VL NDRK FH AV QLE L ERDEA+AR LSLGS +A LHRRIAE+KE E Q ++ED+MYMLISYKFS IRVHL+PRLS+C+YNGRLEI+P KDWELESIHS EVLEM++EHL V+GW+ SNV +NW T + K +LC+VYAAS+LYGYFLKSAS+RH LE L +N L + ++L LS+ S G + FG + T+VG+ + KK +KL YVM FDPE LQM AKPKSKEA+NLIEKHS ALFGD+K+GLV SDEVI TSLAS KR VLEA+AFGSFLWD+EEYV YKLK+N
Sbjct: 1 MDCGLSYTKISLHQSLPLTVKPCLSSSTCFAFNNSSFGTSV--GCRRSLFVVASGSSSSKCEFSGLNAPLEPATPAGRLLSTVLLNDRKYFHVAVQKQLEKLAYERDEAVARMNLSLGSDEAFLHRRIAEVKELECQASVEDIMYMLISYKFSGIRVHLIPRLSKCMYNGRLEIWPCKDWELESIHSCEVLEMVREHLTTVLGWKEKSNVADNWTPTEVQKFKLCQVYAASVLYGYFLKSASLRHHLEKKLDHINPYLDIASYNQLLLSEIRSLGSEIVPFGCIGGTRSTSVGQIPLLREKKQDKLKYYVMSFDPETLQMWAKPKSKEALNLIEKHSYALFGDKKTGLVASDEVILTSLASLKRIVLEAIAFGSFLWDAEEYVRIVYKLKEN 390
Match: A0A1S4AP14 ((UV-B-induced protein At3g17800, chloroplastic-like {ECO:0000313|RefSeq:XP_016478477.1}))
HSP 1 Score: 441.039 bits (1133), Expect = 3.475e-152
Identity = 230/386 (59.59%), Postives = 278/386 (72.02%), Query Frame = 0
Query: 1 MDCCISYNKISAFTS--------SFSSFSTGPVVFPGNRRRVIVAAT--SSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDC +SY KI S SSFS+ G RR + V A+ S S C+F LN PLE +P+G+LLS VL NDR NFH AV QLE L +RD+ALAR LS GS +A LHRRIAE+KE E Q ++ED+MY+LISYKFS IRVHLVP+LS+C+YNGRLEI+P +DWELESIHS EVLEM++EHL V+GW+ SNVT+NWA T + KL+LCRVYAAS+L+GYFLKSAS+RH LE + +N DL S+L LS+ S G + FGR+ T+VG + KK EKL YVM FD E LQMCAKPKSKEA+NLIEKH ALFGDEK+GL+ S VISTSLAS KR VLEA+AFGSFLWD+EEY+ + Y+LK+N
Sbjct: 1 MDCGLSYTKICLHQSLPFKVKTTLLSSFSSSTPSSVGCRRLLTVVASGNSRSSKCEFSGLNAPLEPTTPTGRLLSTVLLNDRNNFHVAVQKQLEHLAYDRDQALARMYLSFGSDEAFLHRRIAEVKELECQASVEDIMYILISYKFSGIRVHLVPKLSKCMYNGRLEIWPCRDWELESIHSCEVLEMVREHLTIVLGWKEKSNVTDNWAPTKVQKLQLCRVYAASVLFGYFLKSASLRHHLEQKVDHINRDLGIAGSSQLLLSELRSLGSETVPFGRISGTRSTSVGRIPLVREKKQEKLKYYVMSFDAETLQMCAKPKSKEALNLIEKHIYALFGDEKTGLIASGGVISTSLASLKRIVLEAIAFGSFLWDAEEYIRTVYQLKEN 386
Match: A0A1U7VL62 ((uncharacterized protein LOC104215037 {ECO:0000313|RefSeq:XP_009763079.1}))
HSP 1 Score: 440.654 bits (1132), Expect = 5.746e-152
Identity = 227/395 (57.47%), Postives = 279/395 (70.63%), Query Frame = 0
Query: 1 MDCCISYNKISA------------------FTSSFSSFSTGPVVFPGNRRRV-IVAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MDC +SY+KIS FT S F++ V G+RR + +VA+ +S S C+F LN PL +P+G+LLS VL NDR NFH V QLE L +RDEALAR LS GS +A LHRRIAE+KE E Q ++ED+MY+LISYKFS +RVHLVP+LS+C+YN RLEI+P +DWELESIHS EVLEM++EHL V+GW+ SNVT+NWA T + KL+LCRVYAAS+L+GYFLKSAS+RH LE + +N DL S+L LS+ S G + F + T+VG + KK EKL YVM FD E LQMCAKPKSKEA+NLIEKH ALFGDEK+GL+ S EVISTSLAS KR VLEA+AFGSFLWD+EEY+ + Y+LK N
Sbjct: 1 MDCGLSYSKISLHQSLLFTVKTTLLSSSTRFTFKNSPFTSSSV---GSRRSLFVVASGNSSSKCEFSGLNAPLVPTTPTGRLLSTVLLNDRNNFHVVVQKQLEQLAYDRDEALARINLSFGSDEAFLHRRIAEVKELECQASVEDIMYILISYKFSGMRVHLVPKLSKCMYNDRLEIWPCRDWELESIHSCEVLEMVREHLTTVLGWKEKSNVTDNWAPTKVRKLQLCRVYAASVLFGYFLKSASLRHHLEQKVDHINRDLGIAGSSQLLLSELRSLGSETVPFSHISGTRSTSVGRIPLVREKKQEKLKYYVMSFDAETLQMCAKPKSKEALNLIEKHIYALFGDEKTGLIASGEVISTSLASLKRIVLEAIAFGSFLWDAEEYIRTVYQLKDN 392
Match: A0A6P6B328 ((UV-B-induced protein At3g17800, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_022771534.1}))
HSP 1 Score: 435.261 bits (1118), Expect = 1.094e-149
Identity = 235/404 (58.17%), Postives = 283/404 (70.05%), Query Frame = 0
Query: 1 MDCCISYNK---ISAFTSSFSSFSTGPVVF-----PGN-----RRRVI---------------VAATSSDSHCDFGSLNTPLELRSPSGKLLSRVLQNDRKNFHHAVAGQLELLVSERDEALARFRLSLGSSDASLHRRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 375
MD +S +K +S+F S S GP VF P N RRR+ V A++ SHCDF SLN PLE RS GKLLS VLQN R+ FH A A +L+ L +RD A+AR LSL S +A LHRRIA++KE + Q A+EDV+YMLI YKFSEIRV LVPRLS+CIYN RLEI+PSKDWELESIHS+EVLEM+KEH+ VIG RA+S+VT+NWATT I +L+L RVYAASILYGYFLKSAS RH+LE LT L ++ R N + L D G +L FG V + ++G+ Q K E+L YVMGFDPE LQ CAK KSKEA++LIEKHSCALFGDE++G++E+DEVI TS +S KR VLEAVAFGSFLW+ EEYVD+ YKLK N
Sbjct: 1 MDHSLSLHKASFVSSFLPSAVKNSQGPYVFTPRNLPSNFTSSHRRRLTTGFSSTAFSNRKEPSVKASAGASHCDFSSLNAPLEPRSAPGKLLSSVLQNQRQFFHFAAADELKRLACDRDAAVARMSLSLNSDEACLHRRIAQVKEHDCQAAVEDVIYMLIFYKFSEIRVPLVPRLSRCIYNDRLEIWPSKDWELESIHSIEVLEMVKEHVSTVIGLRANSSVTDNWATTKIQRLQLGRVYAASILYGYFLKSASSRHKLERCLT-LAHEERLNHRNSLQFPDLLPCGFKSLIFGHVSDMQSVSLGKGPVRQEKNLEELRCYVMGFDPETLQRCAKLKSKEAVSLIEKHSCALFGDEQTGMLETDEVILTSFSSLKRLVLEAVAFGSFLWEIEEYVDTVYKLKDN 403
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AH65 | E-Value: 5.633e-174, PID: 60.82 | (Putative F21O3.2 protein {ECO:0000313|EMBL:MPA554... [more] |
| A0A5B7AGK6 | E-Value: 1.494e-172, PID: 65.96 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5543... [more] |
| A0A7J0GRA4 | E-Value: 6.921e-163, PID: 65.80 | (Phosphoserine aminotransferase, putative {ECO:000... [more] |
| A0A7J7HPR6 | E-Value: 1.438e-161, PID: 56.42 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5954... [more] |
| A0A2R6QSM7 | E-Value: 1.565e-160, PID: 59.39 | (UV-B-induced protein {ECO:0000313|EMBL:PSS14109.1... [more] |
| A0A3Q7I236 | E-Value: 2.473e-156, PID: 59.03 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| M1AGU9 | E-Value: 6.221e-154, PID: 59.69 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A1S4AP14 | E-Value: 3.475e-152, PID: 59.59 | (UV-B-induced protein At3g17800, chloroplastic-lik... [more] |
| A0A1U7VL62 | E-Value: 5.746e-152, PID: 57.47 | (uncharacterized protein LOC104215037 {ECO:0000313... [more] |
| A0A6P6B328 | E-Value: 1.094e-149, PID: 58.17 | (UV-B-induced protein At3g17800, chloroplastic iso... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |