DCAR_003447

Resource Type: 
Polypeptide
Name: 
DCAR_003447
Identifier: 
DCAR_003447.mRNA-protein
Sequence: 
MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAVSSISLRQDSL
SICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSC
GALQGKHVVFKLSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASE
LVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQF
AGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNF
LSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAI
HIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAK
NPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILL
DLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPL
LLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTSDNQIDVKGGPSDA
KTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKV
LSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNI
VVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGV
ALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSA
GATPADK*
Sequence Length: 
708
Sequence Checksum: 
149c836395a027202b4d56f22ec40ebe
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_003447, derives from mRNA, DCAR_003447.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C933 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77672.1}))

HSP 1 Score: 901.353 bits (2328), Expect = 0.000e+0
Identity = 474/750 (63.20%), Postives = 560/750 (74.67%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGP---SDAKTKEKSSSDSK--------VKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNA--PVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN--SSISNSKQ-AERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 697
            M    +LQLS +LG+ +NH S+++F++   S +++LL A +SS++L++DS SI LS+ +++ + + P + N F C+S LN G +  ISS+KN A  L RS  ALQG  +V KL                                   S   YV+TSYLQP+LLWTG TLICR LDPVVL SEAS++VKQRLLNFVRSLSTVLA AYC+SSVIQQ QK+FMET++P D+RN+ FQFAGKA+YTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDV+KINNIVADMRKVLAKNPQVEQQ+LHRRVFLEN+N ENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+YGD+DL+++PFADS FTRG A +NRP LLIEP  K+NGE +TK  TRS RTNGEQD+KA AR T D++ D KGG    SD+K KE   SDSK         KA++ AG VP+ D+K+        + D K GDKV  K  SKS +K  SK  E+SSS+S     VS N  +N S    PK   L  A QN  +++PSA++ E+  +K    SS S SKQ +ERL     P SRP  EENIVLGVAL+GSKRTLPIEEGM PS T  EVKELATSR+G+ S   +KDKKD Q
Sbjct:    1 MAFSGSLQLSHELGICKNHGSNKQFRNVMGSHKLRLLSANLSSLALQRDSWSIHLSNSVYRPIRSVPSRCNMFKCNSFLNPGRAFEISSIKNAAIALKRSYNALQGSPLVLKLVPAVGIIVFAVWGLGPLMRQSRSIFLHKSDSSWRKSSMYYVMTSYLQPLLLWTGVTLICRVLDPVVLTSEASQIVKQRLLNFVRSLSTVLALAYCLSSVIQQAQKFFMETNDPTDTRNMSFQFAGKAMYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENINSENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTMQKIYGDSDLENIPFADSTFTRGGAASNRPFLLIEPPYKINGEDRTK--TRSVRTNGEQDSKAAARPTPDSKADAKGGAALTSDSKAKEVPISDSKAREMPSSHTKADAKAGEVPNADTKEGH-IAATSISDPKLGDKVTVKSTSKSASKIDSKFAEVSSSDSKTIHTVSDNSNQNISNNNTPKKVGLGDARQNSTIDDPSASLSESGGKKPGKFSSTSQSKQESERLPVTQPPTSRPALEENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELATSRNGNGSPAAEKDKKDTQ 747    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJ22 ((Mechanosensitive ion channel protein {ECO:0000313|EMBL:PSS30027.1}))

HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 460/738 (62.33%), Postives = 536/738 (72.63%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLG-AVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTS-DNQIDVKGG-PSDAKTKEK-SSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAP--VSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 697
            M  G +LQ+S +LG+ +NH  +++F +   SG++ LL  ++SS++LR D  SI LS RL++     PYK N F CHS LN G +  IS +KN A   TRSC A QG  +V KL                                   SGT YV TSYLQP+LLWTGATLICR LDP+VLPSEAS++VKQRLL+F+RSLS VLA AYC+SSVIQQ QKYFMET++  D RN+GFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVE ++LHRRVFLEN+NPENQAL+ILISCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y D DLD++PF+DS+FTRG A +NRPLLLIEP  K+NGE +TK Q RS RTNG+QD KA AR   D +ID KGG P   ++K K ++SD+K+  +  AG   +PD+K D         D   GDK   K  S + +K  SK  E+SSS+S A    S  +T NN   K  K   L +  QN  V  PSA+  ET   K + S S  +  +       P SRP   ENIVLGVAL+GSKRTLPIEEGM PS T  EVKELA  R+G+ S   +KDKK++Q
Sbjct:    1 MAVGGSLQISLELGICKNHGCNKQFMNVTRSGKLHLLKPSLSSLALRPDPWSIRLSGRLYRPKCPIPYKCNMFKCHSFLNPGKASEISCMKNAATAFTRSCNAFQGSPIVLKLVSAVGIIAFAVWGLGPLMRQSRNVFLHKSDSSWKKSGTYYVTTSYLQPLLLWTGATLICRVLDPMVLPSEASQIVKQRLLSFIRSLSAVLALAYCLSSVIQQAQKYFMETNDSTDPRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENINPENQALLILISCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDPDLDNIPFSDSLFTRGGAASNRPLLLIEPPYKINGEDRTKPQNRSVRTNGDQDGKAAARPPHDGKIDAKGGAPPIPQSKAKETTSDTKI--DVKAGETQNPDTKGDNTVR-TSTSDRTIGDKEMVKPTSNNASKTDSKFAEVSSSDSKAAGSTSTQITSNN---KHTKKTGLGNTQQNGTVNIPSASSSETGGEKPDESPSTPQAKQESERPQQPISRPPLGENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELAQFRNGNGSLAAEKDKKESQ 732    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CE39 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77673.1}))

HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 456/751 (60.72%), Postives = 541/751 (72.04%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL------------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGP---SDAKTKEKSSSDSK--------VKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNA--PVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN--SSISNSKQ-AERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 697
            M    +L LS +LG++ N+  + + +     G + L    +SS +LRQD+ S+ L + +   +     + N F C S L       +  L+  A  +TRS  AL G  +V +L                                    SGT+YV+TSYLQP+LLWTGA LICR LDPV+LPSEA++ VKQRLLNFVRSLSTVLAF YC+SS+IQQTQK+FMET++  D+RN+GFQFAGK +Y+AVWVA+VSLFMELLGFSTQKWLTAG LGTVLLTLAGREIFTNFLSSVMI ATRPFIV+EWI+TKIEGYEVSGTVEHVGWWSPTI+RGDDREA+HIPNHKFT+NVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLEN+N ENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+YGD+DL+++PFADS FTRG A +NRP LLIEP  K+NGE +TK  TRS RTNGEQD+KA AR T D++ D KGG    SD+K KE   SDSK         KA++ AG VP+ D+K+        + D K GDKV  K  SKS +K  SK  E+SSS+S     VS N  +N S    PK   L  A QN  +++PSA++ E+  +K    SS S SKQ +ERL     P SRP  EENIVLGVAL+GSKRTLPIEEGM PS T  EVKELATSR+G+ S   +KDKKD Q
Sbjct:    2 MAVAGSLLLSRELGIHSNYGYNNQPKCMIGKGCLHLFSTTLSSHALRQDASSLLLLNSVRGPISPLSSRCNVFQCRSFLTPSGGNEVPVLRTAATVMTRSYNALHGNPIVLQLVPAVGLVAFAMWGLGPLMRLSRILFLHQKSDSSWKKSGTHYVMTSYLQPLLLWTGAILICRVLDPVILPSEATQAVKQRLLNFVRSLSTVLAFTYCLSSLIQQTQKFFMETNDSGDARNMGFQFAGKTIYSAVWVASVSLFMELLGFSTQKWLTAGSLGTVLLTLAGREIFTNFLSSVMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTMNVVRNLSQKAHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENINSENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTMQKIYGDSDLENIPFADSTFTRGGAASNRPFLLIEPPYKINGEDRTK--TRSVRTNGEQDSKAAARPTPDSKADAKGGAALTSDSKAKEVPISDSKAREMPSSHTKADAKAGEVPNADTKEGH-IAATSISDPKLGDKVTVKSTSKSASKIDSKFAEVSSSDSKTIHTVSDNSNQNISNNNTPKKVGLGDARQNSTIDDPSASLSESGGKKPGKFSSTSQSKQESERLPVTQPPTSRPALEENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELATSRNGNGSPAAEKDKKDTQ 749    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RE24 ((Mechanosensitive ion channel protein {ECO:0000313|EMBL:PSS26801.1}))

HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 438/735 (59.59%), Postives = 516/735 (70.20%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLG-AVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVART-SDNQIDVKGG-PSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 697
            M  G +LQ++ +LG+ + H  + +F S   SG++ LL  ++S ++LR D  SI LS + ++     PYKRN   CHS LN      IS +KN A   TRSC A QG  +V KL                                   SGT YV TSYLQP LLWTGATLICR LDP+VLPSEAS++VKQRLL F+RSLS VLA AYC+SS+IQQ QK+FMET+   D RN+GFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVE ++LHRRVFLEN+N ENQAL+ILISCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y D DLD++PF+DS FT G A +NRPLLLIEP  K+NGE +TK Q RS RTNGEQD+K   R+  D + D KGG P   ++K K ++ S+ K +  AG   + D+K D         D   GDK   K  S S+A+   K  E+SSS S A  S ++   ++ K+  K G   +  QN  V  PSA+  ET   K +      +  +       P SRP   ENIVLGVAL+GSKRTLPIEEGM  +++  EVKELA  ++G+ S   +KDK D Q
Sbjct:    1 MAVGGSLQITNELGICKTHVCNIQFLSMTQSGKLHLLKPSLSPLALRLDPWSIRLSGKEYRPKCPIPYKRNVVKCHSFLNPSKGFEISCMKNAAIAFTRSCNAFQGSPIVLKLVSAVGIIVFAVWGLGPLMHQCRNMFLHKSDSSWKKSGTYYVTTSYLQPFLLWTGATLICRVLDPIVLPSEASQIVKQRLLGFIRSLSAVLALAYCLSSIIQQAQKFFMETNASTDPRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENINSENQALLILISCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDPDLDNIPFSDSFFTHGGAASNRPLLLIEPPYKINGEDRTKPQNRSVRTNGEQDSKTAVRSPPDGKTDSKGGAPPIPQSKAKETT-SETKIDVKAGETQNLDTKGDNTAR-TSTSDRTMGDKEMAKPTSNSSAQTDYKFSEVSSSESKAVGSTSIQSTSNNKQTKKTGS-GNGQQNSTVNIPSASFSETGGEKPDEFPLTPQAKQESERPQQPISRPPLGENIVLGVALEGSKRTLPIEEGM--ASSHAEVKELAQFQNGNGSLAAEKDKNDGQ 730    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZFB5 ((mechanosensitive ion channel protein 2, chloroplastic {ECO:0000313|RefSeq:XP_021273616.1}))

HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 437/752 (58.11%), Postives = 536/752 (71.28%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAV---SSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPAD-SRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTS-DNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANS---SISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELAT-SRSGSASSTVDKDKKDNQ-NSAGATPADK 707
            M    +LQLS  LG+ RN   +++F+S     ++ LL A     S+ L+QDS  I LSD L++ +H+ PY+ N F CH+    G    +  +K  +  +TRS   LQG  +VFKL                                   S T+Y+ TSY+QP+LLWTGA LICR LDP+VLPSEAS++VKQRLLNFVRSLSTVLAFAYC+SS+IQQ QK+FMETS+  D +RN+GFQFAGKA+Y+AVW+AAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQ+L+IL+SCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y DAD +++PFADSV++ G  P+NRPLLLIEPS K+NGE +TK   RS+R  GEQD+K  AR S D + D  G      +K K +   + KA++  G  P+ D+K+D K       D K  DKV  K  SKS  K  S   E  S +    V  ++++N+   K+  + + K+A Q+  ++NPS + P+T   KA      + + +  ERL     P +RPV EENIVLGVAL GSKRTLPIEEGM PS    + KE+A+ SR+G+ S+   +DKKD Q  S+ +TP ++
Sbjct:    1 MSLAGSLQLSHDLGLCRNQGYNKKFKSVLGRSKLHLLSATLSSHSLVLQQDSWRIHLSDSLYRPIHSVPYRNNAFRCHAFQVPGQIFELPGVKAVSVAVTRSYNILQGSPLVFKLVPAFGIIIFALWGVAPLIRQSRSLLFHKSDNSWKKSRTHYITTSYIQPLLLWTGAILICRTLDPLVLPSEASQVVKQRLLNFVRSLSTVLAFAYCLSSMIQQLQKFFMETSKTTDDTRNMGFQFAGKAIYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSLLILVSCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDADWENIPFADSVYSHGGVPSNRPLLLIEPSYKINGEDRTKG--RSSRPAGEQDSKTTARPSADTKADKAGATPKPDSKAKGAPSIEPKADAKIGETPNSDTKEDLKAAFASTSDLKTDDKVAMKSPSKSVPKTSSNATETYSPDQK--VLDSISDNSPQNKKVTDKQQKNARQSSKLDNPSVSSPDTGIDKAGGLREPLQSKQDGERLPVSQPPIARPVLEENIVLGVALGGSKRTLPIEEGMTPSPA--DAKEMASASRNGTGSTA--EDKKDGQVRSSPSTPDEQ 744    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DHM1 ((MSCS-like 2 {ECO:0000313|EMBL:EOX91945.1}))

HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 434/752 (57.71%), Postives = 531/752 (70.61%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAV---SSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPAD-SRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVART-SDNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANS---SISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELAT-SRSGSASSTVDKDKKDNQ-NSAGATPADK 707
            M    +LQLS  LG+ RN   +++F+S     +  LL A     S+ L+QDS  I LSD L++ +H+ PY+ N F CH+    G    +  +K  +  +TRS   LQG  +VFKL                                   S T ++ TSY QP+LLWTGA LICR LDP+VLPSEAS++VKQRLLNFVRSLSTVLAFAYC+SS+IQQ QK+FMET+E  D +RN+GFQFAGKA+Y+AVW+AAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQAL+IL+SCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+Y DADL+++PFADSV++ G  P+NRPLLLIEPS K+NGE + K   RS+R  GEQD+K  AR  +D + D  G      +K K +   + KA++  G  P+ D+K+D K       D K  DKV  K  SKS  K  S   E  S +    V  ++++N    K   + + K A Q+  ++NPS + P+    KA      + + ++ E+L     P +RPV EENIVLGVAL+GSKRTLPIEEGM PS    + KE+A+ SR+GS S+   +DKKD Q  S+ +TP ++
Sbjct:    1 MSLAGSLQLSHDLGLCRNQGYNKKFKSVMGRSKPHLLSATLSSRSLVLQQDSWRIRLSDSLYRPIHSVPYRNNAFRCHAFRVPGQIFELPGVKAVSVAVTRSYNILQGSPLVFKLVPAFSIIIFALWGVAPLIRQGRSLLFHKSDNSWKKSRTLFITTSYFQPLLLWTGAILICRTLDPLVLPSEASQVVKQRLLNFVRSLSTVLAFAYCLSSMIQQLQKFFMETNETTDDTRNMGFQFAGKAIYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILVSCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTLQKIYSDADLENIPFADSVYSHGGVPSNRPLLLIEPSYKINGEDRIKG--RSSRPAGEQDSKTTARPRADTKADKAGATQKPDSKAKGAPSIEPKADAKIGETPNSDTKEDLKVAFASTSDLKTDDKVAMKSPSKSVPKKSSNAIETYSPDQK--VLDSISDNLPQNKMVTDKQQKIARQSSKLDNPSGSSPDAGVDKAGGLREPLQSKQEGEKLPVTQPPIARPVLEENIVLGVALEGSKRTLPIEEGMTPSPA--DAKEIASASRNGSGSTA--EDKKDGQVRSSPSTPDEQ 744    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QUN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8010516.1}))

HSP 1 Score: 822.387 bits (2123), Expect = 0.000e+0
Identity = 435/749 (58.08%), Postives = 526/749 (70.23%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAV--SSISL-RQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGPS---DAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSN--APVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTA-VDIPA-SRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSAGAT 703
            M   C LQLSP+LG+  N   +++++S    G++ LL A   S +S  RQ+S S CL D  ++ +H+ P + N F C S L  G    + S K  A  LT S   L+G  +V KL                                   S T YV+TSYLQP+LLWTGA LICRALDPVVLP+EAS++VKQRLLNFVRSLSTVLA AYC+SS+IQQ QK+  ET++ +D+RN+GFQFAGKAVY+AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QKSHWRIKTHLAISHLDVNKIN+IVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+YGD DL+++PFAD++F R    +NRPLL+IEP N++NGE K K+  RS R   EQD+K   R T DN+ D K  P+   D KTKE  +SD+  K ++  G  P+PD K + K   + V D K  +    K  SK  +K  SK  E+  S+      VS N T+  S  KQPK+    +  Q     + S++     K      I + ++ ER+ A V  P+ +RP+ E+NIVLGVAL+GSKRTLPI+EGM    +  E KE+A SR+G+ S T +KDKKD     G +
Sbjct:    1 MALACYLQLSPELGLCGNQRCNKQYKSVIGRGKLHLLSATLSSRVSFQRQESWSFCLLDTAYRPIHSLPSRFNAFKCCSFLRPGQPFQLPSTKTVAMALTGSYNVLEGSPLVLKLVPAVGIIIFAVWGIGPLLRQSRNVLLHKNDNSWKKSRTYYVMTSYLQPLLLWTGAALICRALDPVVLPTEASQVVKQRLLNFVRSLSTVLALAYCLSSMIQQAQKFVTETNDSSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVNKINSIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGDTDLENVPFADTIFNRSEVASNRPLLMIEPPNRINGEDKIKN--RSVRATAEQDSKTSVRPTPDNKGDAKVEPTSVLDHKTKETPTSDT--KGDNKIGETPNPDPKAELKSAAVSVSDPKGYENATTKPTSKPVSKTNSKGAEMPFSDPKGMGSVSDNSTQKVSDGKQPKSASFGNVTQKSRSPSVSSSEGSVDK----PIIQSRQEGERMPAPVAQPSTTRPILEDNIVLGVALEGSKRTLPIDEGMVTPPSHAEGKEMAASRNGNGSPTSEKDKKDGHVPTGPS 741    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TK15 ((mechanosensitive ion channel protein 2, chloroplastic-like {ECO:0000313|RefSeq:XP_027078400.1, ECO:0000313|RefSeq:XP_027078401.1}))

HSP 1 Score: 819.691 bits (2116), Expect = 0.000e+0
Identity = 439/756 (58.07%), Postives = 528/756 (69.84%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNK-VNGEGKTKSQTRSARTNGEQDNKA-VARTSDNQIDVKGGP---SDAKTKE------KSSSDSKVKANSSAGVVPDPDSKKD-QKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRK--ANSSISNSKQAERLTAVDIPAS-RPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSAGATPA 705
            M    +LQLS +LG+ RNH  +++  +     +   LG+  +S+ LR++S +  LS RL  + ++ PYK   F C+S L+ G S  IS++KN A  LTRSC  LQG  +V KL                                   S T YV+TSYLQP+LLWTGA L+CRALDPVVLP+EAS +VKQRLLNFVRSLSTVLAFAYC++SVIQQ QK+FMET+EPADSRN+GFQFAGKAVYTAVWVAA SLFMELLGFSTQK+LTAGGLGTVL+TLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTI+RGDDREA+HIPNHKFTVNVVRN++QK+HWRIKTHL ISHLDVNKIN+IVADMRKVLAKNPQVEQQKLHRRVFLEN+NPENQAL+I +SCFVKTS FEEYLCVKETI+LDLLRVI HHRARLATPIRTVQK+Y DAD++++P+ DS F R  AP  RPLL IEP  K +NGE + K+  RS R +G +D KA V R  D + + +GG    SD+K+KE      K +S + ++A++  G + +PDSK+   K E  P  D K  DK   K  S  T K+ SK  E+ + +S  P    +    S K QP    ++  P      N S  +PE    K    SS    KQ +       P+S +PV EENIVLGVAL+GSKRTLPIEEGM     S E+KELA   SG+ +  VDKDKK+ Q S  +  A
Sbjct:    1 MAAAGSLQLSHELGICRNHVCNKQLLNVTGGCKTYFLGSNFTSLILRRNSWTPQLSTRLRWQTNSLPYKYYQFKCYSSLSPGPSFDISTVKNVALTLTRSCNNLQGSALVNKLVPAVGLVIFALWGLGPLMQQSRNIFLHKSDNSWQKSSTCYVLTSYLQPLLLWTGALLVCRALDPVVLPTEASRIVKQRLLNFVRSLSTVLAFAYCLTSVIQQAQKFFMETNEPADSRNMGFQFAGKAVYTAVWVAAASLFMELLGFSTQKYLTAGGLGTVLITLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLGISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLENINPENQALLIFVSCFVKTSHFEEYLCVKETIMLDLLRVIRHHRARLATPIRTVQKIYNDADMENIPYGDSFFDRETAP-KRPLLFIEPPYKIINGEERKKTDGRSVRGSGGEDGKATVRRIPDTKAEGRGGTNQGSDSKSKETPSFKAKETSATDLQADTKVGEMSNPDSKEGVSKVEAKPSADPKVSDKFQVKTSSAGT-KSESKSTELPTVDSKMPADGKI----SNKSQPAKA-VQGGPMGNAAGNTSTNLPEHGGEKPATTSSTKQLKQEDDRPPHSQPSSTKPVMEENIVLGVALEGSKRTLPIEEGMVSQPNSSELKELAKCHSGNGTPLVDKDKKEIQQSESSKSA 749    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNM4 ((mechanosensitive ion channel protein 2, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_011099985.1}))

HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 435/748 (58.16%), Postives = 525/748 (70.19%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLL---GAVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKA-VARTSDNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLS--------KSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKA-NSSIS-NSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNS 699
            M    +LQLS +LG+ RNH   +  +   +S R KL      + SISL+Q S S   S R+H+RV   P + + F CH  LN G SL  + +KN    L RS   LQG  +V KL                                   S T  V TSY+QP+LLWTGA  ICRALDP+ LP+EA ++VKQRLLNFVRSLSTVLAFAYC+SSVIQQ QK+FME+++P D+RN+GFQFAG+AVY+AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDV+KINNIVADMRKVLAKNPQVEQQKLHRRVFL+N+NPENQALMIL+SCFVKTS FEEYLCVKE ILLDLLRVI HHRARLATPIRTVQK++ DADLD +PF+DS+F+RG A TNRPLLL+EPS KVNG  K+KSQ RSAR +GE+++KA V  TSDN++D K      +  +  ++D   K   ++      D+K D +F   P  +TK+  K+  K+ S        K  ++  +K+ E +S ++N   S   T N S KKQ         PQ +  E  S +  E   R++ N S+S +SKQ  +  A   PAS+   EENIVLGVAL+GSKRTLPIEE   P+   ++VKELA  RSG+  +  +KDK D + S
Sbjct:    1 MAVSGSLQLSLELGICRNHGRIKRLRV-NSSARDKLCTLSSTLPSISLQQFSWSSNFSKRIHRRVCTIPCRNHQFRCHCFLNPGPSLDANIIKNATLTLARSINRLQGSPIVIKLASAVGILIFAVWGLGPLVRLSRNIFMQKSDSNWKKSSTYQVTTSYIQPLLLWTGAIFICRALDPMALPTEAGQIVKQRLLNFVRSLSTVLAFAYCLSSVIQQVQKFFMESNDPTDTRNMGFQFAGRAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVIRHHRARLATPIRTVQKIFTDADLDGVPFSDSMFSRG-AVTNRPLLLVEPSYKVNGADKSKSQARSARASGEEESKATVKSTSDNKVDAKDETILNRDSKSRATDHMPKEMQTS------DAKADSQFAQTPKVETKEDPKIAAKIPSDPNLNNSTKPASRTDTKLLEETSPDANN--SSGPTYNTSAKKQ---------PQKVGQETTSVSASELGPRRSDNVSLSMHSKQDIKQPAPQTPASKQSLEENIVLGVALEGSKRTLPIEEETVPTLNPEDVKELAALRSGNGPAVAEKDKNDIKKS 729    
BLAST of DCAR_003447 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DHW3 ((mechanosensitive ion channel protein 2, chloroplastic {ECO:0000313|RefSeq:XP_018806735.1, ECO:0000313|RefSeq:XP_018806736.1}))

HSP 1 Score: 812.757 bits (2098), Expect = 0.000e+0
Identity = 419/738 (56.78%), Postives = 526/738 (71.27%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAV--SSISLRQD-SLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKL-----------------------------------SGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTSDNQIDVK-GGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSN--APVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 697
            M    +L LS + G+ RN   S++++S    G++ LL A   S +S +Q    S C S+  ++ +H+ P +   F CHS L  G    + ++K  A  LTRS   L+G  +V KL                                   S T  ++TSYLQP+LLWTGATLICRA+DPVVL +EAS++VKQRLLNFVRSLSTVLAFA+C+SSVIQQ QK+F+ET++ +D+RN+GFQFAGKAVY+AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFL+NVN E+QAL+ILISCFVKTS +EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y D DL+++PFA+++++R    +NRPLL+IEPS ++NGE KT++Q RSAR +GEQD K+  R   ++ D K G  S +  K + +  S  KA++  G  P+PD+K+D K     V D K G+    K  SKS +K  SK+ E+  S+    A V+ N T+  S  KQPK+    +  Q     + S+      K    ++  + +++ER+  +     RP  E+NIVLGVAL+GSKRTLPI+EGM   ++  E KE+A SR+G+ S T +KDKKD Q
Sbjct:    1 MALAGSLHLSHEWGLCRNRGCSKQYRSVTGRGKLHLLSATLSSRVSFQQQLCWSFCPSNTAYRPMHSLPKRCKAFKCHSFLRPGLPFQLPNIKTAAMALTRSYNVLEGSPLVIKLVPAVGIIIFAVWGIGPLLCQSRNILLHKNDSSWKKSRTYNIMTSYLQPLLLWTGATLICRAMDPVVLSTEASQIVKQRLLNFVRSLSTVLAFAFCLSSVIQQAQKFFIETNDSSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNVNHESQALLILISCFVKTSHYEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKVYSDTDLENIPFAETIYSRDGVASNRPLLMIEPSYRINGEEKTRTQNRSARASGEQDGKSSGRPVPDKGDAKVGATSVSDYKARETPPSNAKADAKIGETPNPDTKEDPKAAAASVSDPKGGEHTIVKPTSKSISKTDSKVAEMPFSDPKGVASVADNSTQKVSNGKQPKSDSFGNITQKFNNPSVSSPESSVEKAGGFTATQSRQESERMPTM----PRPRLEDNIVLGVALEGSKRTLPIDEGMVSPSSQAEGKEMAASRNGNGSPTPEKDKKDGQ 734    
Match NameStatsDescription
A0A5B7C933E-Value: 0.000e+0, PID: 63.20(Uncharacterized protein {ECO:0000313|EMBL:MPA7767... [more]
A0A2R6RJ22E-Value: 0.000e+0, PID: 62.33(Mechanosensitive ion channel protein {ECO:0000313... [more]
A0A5B7CE39E-Value: 0.000e+0, PID: 60.72(Uncharacterized protein {ECO:0000313|EMBL:MPA7767... [more]
A0A2R6RE24E-Value: 0.000e+0, PID: 59.59(Mechanosensitive ion channel protein {ECO:0000313... [more]
A0A6J0ZFB5E-Value: 0.000e+0, PID: 58.11(mechanosensitive ion channel protein 2, chloropla... [more]
A0A061DHM1E-Value: 0.000e+0, PID: 57.71(MSCS-like 2 {ECO:0000313|EMBL:EOX91945.1})[more]
A0A5N6QUN6E-Value: 0.000e+0, PID: 58.08(Uncharacterized protein {ECO:0000313|EMBL:KAE8010... [more]
A0A6P6TK15E-Value: 0.000e+0, PID: 58.07(mechanosensitive ion channel protein 2, chloropla... [more]
A0A6I9UNM4E-Value: 0.000e+0, PID: 58.16(mechanosensitive ion channel protein 2, chloropla... [more]
A0A2I4DHW3E-Value: 0.000e+0, PID: 56.78(mechanosensitive ion channel protein 2, chloropla... [more]

Pages

back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

Loading content