MQLRGSSLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTIS
LIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSEL
LWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSI
YVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDI
SNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKEN
MLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEH
YFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEH
QNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF*
| Relationships |
|---|
| The polypeptide, DCAR_004447, derives from mRNA, DCAR_004447. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A6A4LES4 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9459146.1}) (Fragment))
HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 273/381 (71.65%), Postives = 325/381 (85.30%), Query Frame = 0
Query: 8 LEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
+EEGK+P VT + NQ R P RLL++L+ F +LC +FSA+++ ++R+ G QS M+R +F C+++ ++WIRPP+ L+H+M D EL WRA+F+P+ K YPF RVPKIAFMFLTKGPLPLAP+WERFF GH+GLYSIYVHSLPSF+ QFP+SSVFY+RQ+PSQVSEWG+MS+CDAERRLLANALLDISNEWFILLSESC PL NF+V Y Y+MKSKYSF+GAFDDPGP GRGRY NM PEVNI++WRKGSQWFEVNRKLA+ IVED KFYPKF +FC+P CYVDEHYFPTMLTI+AP ++ANRSITWVDWSRGG HPATFGR DITEEF+KRVLE Q+C YN Q SSVC+LF RKFAPS L+PLLL+APKYLG+
Sbjct: 8 MEEGKDPIVTARTNQSRGFPQRLLQILVGFFLLCVVFSAISMYMVRYSGFQS--AVAMARPSFQLCVEKPSNGLEQWIRPPSKLMHNMTDEELFWRATFMPRMKNYPFDRVPKIAFMFLTKGPLPLAPLWERFFNGHEGLYSIYVHSLPSFQDQFPASSVFYRRQVPSQVSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYHYIMKSKYSFMGAFDDPGPFGRGRYNSNMAPEVNITQWRKGSQWFEVNRKLAVYIVEDTKFYPKFSDFCKPSCYVDEHYFPTMLTIQAPNLVANRSITWVDWSRGGAHPATFGRADITEEFLKRVLEGQSCFYNNQPSSVCFLFARKFAPSALDPLLLVAPKYLGY 386
Match: A0A2R6Q308 ((Hemocyanin D chain like {ECO:0000313|EMBL:PSS01239.1}))
HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0
Identity = 279/388 (71.91%), Postives = 324/388 (83.51%), Query Frame = 0
Query: 1 MQLRGSSLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQL +EEGK+PTV ++ NQ RV+P RLL+LL FLVLC FS V+I +IR+FG + V +S +F C+ EEP + ++WIR P+NLLH+M D ELLWRASF+P+ K+YPF RVPKIAFMFLTKGPLPLAPIWERFF+GH+GLYSIY+HSLPSF+ FPSSSVFY+RQIPSQ+SEWG+MS+CDAERRLLANALLDISNE FILLSESC PL NF+V Y Y+ KSK+SFIGAFDD GPHGRGRY ENM PEVNI+ WRKGSQWFE+N+KLA +VED FYPKF EFCRP CYVDEHYFPTMLTI+A +LANRSITWVDWSRGGPHPATFG+ DITEEF+KR+ E C YN Q SS+C+LF RKFAPS LEPLLL+AP Y G+
Sbjct: 1 MQLGAMPMEEGKDPTVVIRTNQSRVLPQRLLQLLGAFLVLCVTFSIVSIYMIRYFGVHN--VVPVSLPSFQPCV-EEPTSLEKWIRAPSNLLHTMTDKELLWRASFVPRIKKYPFTRVPKIAFMFLTKGPLPLAPIWERFFKGHEGLYSIYIHSLPSFQVDFPSSSVFYRRQIPSQLSEWGKMSMCDAERRLLANALLDISNERFILLSESCIPLYNFSVIYHYITKSKHSFIGAFDDHGPHGRGRYNENMAPEVNITMWRKGSQWFELNQKLARYVVEDTVFYPKFAEFCRPACYVDEHYFPTMLTIQAANLLANRSITWVDWSRGGPHPATFGKSDITEEFLKRIFEGHTCLYNNQTSSMCFLFARKFAPSALEPLLLVAPNYFGY 385
Match: A0A1R3IVK5 ((Glycosyl transferase, family 14 {ECO:0000313|EMBL:OMO86612.1}))
HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0
Identity = 282/391 (72.12%), Postives = 323/391 (82.61%), Query Frame = 0
Query: 1 MQLR-GS--SLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQ R GS SLE+ K+ V + NQ + +P RLL+L LFL LCF FS ++I +RHFG S+ T ++ F+ C +EEPL DRW +PP+NLLHSM+D EL WRASF+P+ K+YPF R PKIAFMFLTKGPLPLAP+WERF +GH+G YSIY+HSLPSF +FPSSSVFYKRQIPSQVSEWG+MS+CDAERRLLANALLDISNEWFILLSESC PL NF+V Y Y+ KSKYSFIGAFDDPGP+GRGRY ENM PEVN++ WRKGSQWFEVNR+LA++IVED+ +YPKF FCRP CYVDEHYFPTMLTI+AP +LANRSITWVDWSRGG HPATFGR DITEEF KRV E C YN Q SSVCYLF RKFAPS+LEPLL +APK LGF
Sbjct: 1 MQARVGSHGSLEDSKDSVVATRTNQSKALPLRLLQLFGLFLALCFAFSIISIYSVRHFGIYSVVTT--VKSNFVPC-NEEPLTLDRWTKPPSNLLHSMSDEELFWRASFVPRIKKYPFNRRPKIAFMFLTKGPLPLAPLWERFLKGHEGFYSIYIHSLPSFNAEFPSSSVFYKRQIPSQVSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYHYIKKSKYSFIGAFDDPGPYGRGRYNENMAPEVNVTLWRKGSQWFEVNRRLALNIVEDSTYYPKFEAFCRPACYVDEHYFPTMLTIQAPNLLANRSITWVDWSRGGAHPATFGRADITEEFFKRVFEGHQCRYNDQPSSVCYLFARKFAPSSLEPLLHIAPKVLGF 388
Match: A0A1R3H9D2 ((Glycosyl transferase, family 14 {ECO:0000313|EMBL:OMO66910.1}))
HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 281/391 (71.87%), Postives = 323/391 (82.61%), Query Frame = 0
Query: 1 MQLR-GS--SLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQ R GS SLE+ K+ V + NQ + +P RLL+L LFL LCF FS ++I +RHFG S+ T ++ F+ C +EEPL DRW +PP+NLLHSM+D EL WRASF+P+ K+YPF R PKIAFMFLTKGPLPLAP+WERF +GH+G YSIY+HSLPSF +FPSSSVFY+RQIPSQVSEWG+MS+CDAERRLLANALLDISNEWFILLSESC PL NF+V Y Y+ KSKYSFIGAFDDPGP+GRGRY ENM PEVN++ WRKGSQWFEVNR+LA++IVED+ +YPKF +FCRP CYVDEHYFPTMLTI+AP +LANRSITWVDWSRGG HPATFGR DITEEF KRV E C YN Q SSVCYLF RKFAPS LEPLL +APK LGF
Sbjct: 1 MQARVGSHGSLEDSKDSVVATRTNQSKALPLRLLQLFGLFLALCFAFSIISIYSVRHFGIYSVVTT--VKSNFVPC-NEEPLTLDRWTKPPSNLLHSMSDEELFWRASFVPRIKKYPFNRRPKIAFMFLTKGPLPLAPLWERFLKGHEGFYSIYIHSLPSFNAEFPSSSVFYRRQIPSQVSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYHYIKKSKYSFIGAFDDPGPYGRGRYNENMAPEVNVTLWRKGSQWFEVNRRLALNIVEDSTYYPKFEQFCRPACYVDEHYFPTMLTIQAPNLLANRSITWVDWSRGGAHPATFGRADITEEFFKRVFEGLQCRYNDQPSSVCYLFARKFAPSALEPLLHIAPKVLGF 388
Match: A0A498J7Q8 ((Uncharacterized protein {ECO:0000313|EMBL:RXH91510.1}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 279/389 (71.72%), Postives = 324/389 (83.29%), Query Frame = 0
Query: 1 MQLRGSSLEEGKNPTVTV-KINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
+QLR +EEGK+ V+ + +Q + +P RLL+L LFLV C FS ++I IRHFG + T + +F C+ EEP DRWI+PP+++ H+MND ELLWRASF P+ K+YPF+RVPKIAFMFLTKGPLPLAP+WERF +GH+GLYS+YVHSLPSF+P F SSVFY R IPSQV+EWGRMS+CDAERRLLANALLDISNE FILLSESC PL NF+V YQYLMKSKYS++GAFDDPGP+GRGRY +NM PEV+IS+WRKGSQWFEVNRKLAI+IVED KFYPKF EFCRP CYVDEHYFPTMLTI A LANRSITWVDWSRGGPHPATFGR DITEEF+KR+ E Q CTYN + S+VC+LFGRKFAPS +EPLL LAPK+LGF
Sbjct: 203 LQLRVVPVEEGKDAGVSSSRPSQTKALPIRLLQLFALFLVFCITFSVISIYTIRHFGIIGVMTTVAA--SFQPCL-EEPRGLDRWIKPPSSVKHTMNDEELLWRASFTPRIKKYPFERVPKIAFMFLTKGPLPLAPLWERFLKGHEGLYSVYVHSLPSFQPHFNPSSVFYGRHIPSQVAEWGRMSMCDAERRLLANALLDISNERFILLSESCIPLYNFSVIYQYLMKSKYSYVGAFDDPGPYGRGRYNDNMAPEVSISKWRKGSQWFEVNRKLAITIVEDTKFYPKFKEFCRPACYVDEHYFPTMLTIEAGNSLANRSITWVDWSRGGPHPATFGRADITEEFLKRIFERQRCTYNDRNSTVCFLFGRKFAPSAVEPLLHLAPKFLGF 588
Match: A0A834GNQ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7139034.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 271/381 (71.13%), Postives = 322/381 (84.51%), Query Frame = 0
Query: 8 LEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
+EEGK+PTVT + NQ R P RLL++L+ F +LC +FSA+++ ++R+ G QS T +R +F C+++ ++WIRPP+ L+H+M D EL WRA+F+P+ K YPF RVPKIAFMFLTKGPLPLAP+WERFF GH+GLYSIYVHSLPSF+ QFP+SSVFY+RQ VSEWG+MS+CDAERRLLANALLDISNEWFILLSESC PL NF+V Y Y+MKSKYSF+GAFDDPGP GRGRY NM PEVNI++WRKGSQWFEVNRKLA+ IVED KFYPKF +FC+P CYVDEHYFPTMLTI+AP ++ANRSITWVDWSRGG HPATFGR DITEEF+KRVLE Q+C YN Q SSVC+LF RKFAPS L+PLLL+APKYLG+
Sbjct: 8 MEEGKDPTVTARTNQSRGFPQRLLQILVGFFLLCVVFSAISMYMVRYSGFQSAVAT--ARPSFQLCVEKPSNGLEQWIRPPSKLMHNMTDQELFWRATFMPRMKNYPFDRVPKIAFMFLTKGPLPLAPLWERFFNGHEGLYSIYVHSLPSFQDQFPASSVFYRRQ----VSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYHYIMKSKYSFMGAFDDPGPFGRGRYNSNMAPEVNITQWRKGSQWFEVNRKLAVYIVEDTKFYPKFSDFCKPSCYVDEHYFPTMLTIQAPNLVANRSITWVDWSRGGAHPATFGRADITEEFLKRVLEGQSCFYNNQPSSVCFLFARKFAPSALDPLLLVAPKYLGY 382
Match: A0A7J9EM58 ((Uncharacterized protein {ECO:0000313|EMBL:MBA0774130.1}))
HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 278/391 (71.10%), Postives = 325/391 (83.12%), Query Frame = 0
Query: 1 MQLR-GS--SLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQ R GS SLEEGK+P +T + +Q + +P R L+L FL LC FS ++I IR FG S T ++TF+ C EEP + D W +PP++LLHSM+D ELLWRASF+P+ K+YPF R+PKIAFMFLTKGPLPLAP+WERFF+GH+GLYS+Y+HSLPSFK +FPSSSVFY+RQIPSQV+EWGRMS+CDAERRLLANALLDISNEWFILLSESC PL NF+V YQY+MKSK+SF+GAFDDPGP GRGRY NM+PEVNIS+WRKGSQWFEVNRKLAI+IVED +YPKF +FCRP CYVDEHYFPTMLTI+ P +LANRSITWVDWSRGGPHP TFGR DITE+F KR+LE C YN Q SS+C+LF RKFAPS +EPLL +A K LGF
Sbjct: 1 MQTRIGSVGSLEEGKDPVITTRTSQSKTLPLRALQLFGFFLALCIGFSIISIYTIRRFGIYSTVTT--VKSTFVPCA-EEPNSLDHWRKPPSSLLHSMSDKELLWRASFVPRIKKYPFNRLPKIAFMFLTKGPLPLAPLWERFFKGHEGLYSVYIHSLPSFKAEFPSSSVFYRRQIPSQVAEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVVYQYIMKSKHSFMGAFDDPGPFGRGRYNYNMVPEVNISKWRKGSQWFEVNRKLAINIVEDVTYYPKFEQFCRPACYVDEHYFPTMLTIQTPNLLANRSITWVDWSRGGPHPGTFGRSDITEDFFKRILEGHQCRYNDQPSSICFLFARKFAPSAMEPLLQIAQKVLGF 388
Match: A0A7J9C8U6 ((Uncharacterized protein {ECO:0000313|EMBL:MBA0744913.1}))
HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 278/391 (71.10%), Postives = 325/391 (83.12%), Query Frame = 0
Query: 1 MQLR-GS--SLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQ R GS SLEEGK+P +T + +Q + +P R L+L FL LC FS ++I IR FG S T ++TF+ C EEP + D W +PP++LLHSM+D ELLWRASF+P+ K+YPF R+PKIAFMFLTKGPLPLAP+WERFF+GH+GLYS+Y+HSLPSFK +FPSSSVFY+RQIPSQV+EWGRMS+CDAERRLLANALLDISNEWFILLSESC PL NF+V YQY+MKSK+SF+GAFDDPGP GRGRY NM+PEVNIS+WRKGSQWFEVNRKLAI+IVED +YPKF +FCRP CYVDEHYFPTMLTI+ P +LANRSITWVDWSRGGPHP TFGR DITE+F KR+LE C YN Q SS+C+LF RKFAPS +EPLL +A K LGF
Sbjct: 1 MQTRIGSVGSLEEGKDPVITTRTSQSKTLPLRALQLFGFFLALCIGFSIISIYTIRRFGIYSTVTT--VKSTFVPCA-EEPNSLDHWRKPPSSLLHSMSDKELLWRASFVPRIKKYPFNRLPKIAFMFLTKGPLPLAPLWERFFKGHEGLYSVYIHSLPSFKAEFPSSSVFYRRQIPSQVAEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYQYIMKSKHSFMGAFDDPGPFGRGRYNYNMVPEVNISKWRKGSQWFEVNRKLAINIVEDVTYYPKFEQFCRPACYVDEHYFPTMLTIQTPNLLANRSITWVDWSRGGPHPGTFGRSDITEDFFKRILEGHQCRYNDQPSSICFLFARKFAPSAMEPLLQIAQKVLGF 388
Match: A0A7J9A6G8 ((Uncharacterized protein {ECO:0000313|EMBL:MBA0719452.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 278/391 (71.10%), Postives = 326/391 (83.38%), Query Frame = 0
Query: 1 MQLR-GS--SLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
MQ R GS SLEEGK+P +T + +Q + +P R L+L FL LC FS ++I IR FG S T ++TF+ C EEP + D W +PP++LLHSM+D ELLWRASF+P+ K+YPF R+PKIAFMFLTKGPLPLAP+WERFF+GH+GLYS+Y+HSLPSFK +FPSSSVFY+RQIPSQV+EWGRMS+CDAERRLLANALLDISNEWFILLSESC PL NF+V YQY+MKSK+SF+GAFDDPGP GRGRY NM+PEVNIS+WRKGSQWFEVNRKLAI+IVED +YPKF +FCRP CYVDEHYFPTMLTI+ P +LANRSITWVDWSRGGPHP TFGR DITE+F KR+LE + C YN Q SS+C+LF RKFAPS +EPLL +A K LGF
Sbjct: 1 MQTRIGSVGSLEEGKDPVITTRTSQSKTLPLRALQLFGFFLALCIGFSIISIYTIRRFGIYSTVTT--VKSTFVPCA-EEPNSLDHWRKPPSSLLHSMSDKELLWRASFVPRIKKYPFNRLPKIAFMFLTKGPLPLAPLWERFFKGHEGLYSVYIHSLPSFKAEFPSSSVFYRRQIPSQVAEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYQYIMKSKHSFMGAFDDPGPFGRGRYNYNMVPEVNISKWRKGSQWFEVNRKLAINIVEDVTYYPKFEQFCRPACYVDEHYFPTMLTIQTPNLLANRSITWVDWSRGGPHPGTFGRSDITEDFFKRILEGRQCRYNDQPSSICFLFARKFAPSAMEPLLRIAQKVLGF 388
Match: A0A6P5ZQI7 ((uncharacterized protein LOC111302967 {ECO:0000313|RefSeq:XP_022754645.1, ECO:0000313|RefSeq:XP_022754646.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 270/383 (70.50%), Postives = 319/383 (83.29%), Query Frame = 0
Query: 6 SSLEEGKNPTVTVKINQPRVMPHRLLKLLLLFLVLCFIFSAVTISLIRHFGGQSIFVTNMSRTTFLSCIDEEPLNFDRWIRPPTNLLHSMNDSELLWRASFIPQRKEYPFKRVPKIAFMFLTKGPLPLAPIWERFFRGHDGLYSIYVHSLPSFKPQFPSSSVFYKRQIPSQVSEWGRMSICDAERRLLANALLDISNEWFILLSESCAPLSNFTVAYQYLMKSKYSFIGAFDDPGPHGRGRYKENMLPEVNISEWRKGSQWFEVNRKLAISIVEDNKFYPKFLEFCRPPCYVDEHYFPTMLTIRAPTMLANRSITWVDWSRGGPHPATFGRGDITEEFMKRVLEHQNCTYNGQQSSVCYLFGRKFAPSTLEPLLLLAPKYLGF 388
SL+EGK+P VT + +Q R +P R+L+L LFL LC FS ++I IR FG S+ T ++ F+ C+ EEP + D W +PP+NLLHSM+D ELLWRASF+PQ ++YPF R+PKIAFMFLTKGPLPL+P+WERF +GH+GLYS+Y+HSLPSF +FP SSVFY+RQIPSQVSEWG+MS+CDAERRLLANALLDISNEWFILLSESC PL NF+V Y Y+ KSKYSFIGAFDDPGP GRGRY ENM PEVN+++WRKGSQWFE+NRKLA++IVED +YPKF +FCRP CYVDEHYFPTMLTI+AP +LANRSITWVDWSRGG HPATFGR DITEEF KR+ E C YN Q SS+C+LF RKFAPS LEPLL +AP+ LGF
Sbjct: 12 GSLDEGKDPVVTTRTSQSRTLPLRVLQLFGLFLALCIAFSIISIYTIRRFGIYSVVTT--VKSNFVPCV-EEPNSLDHWRKPPSNLLHSMSDKELLWRASFVPQIEKYPFNRLPKIAFMFLTKGPLPLSPLWERFLKGHEGLYSVYIHSLPSFNAEFPPSSVFYRRQIPSQVSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSVIYHYIKKSKYSFIGAFDDPGPFGRGRYNENMAPEVNVTQWRKGSQWFEINRKLAVNIVEDITYYPKFEQFCRPACYVDEHYFPTMLTIQAPNLLANRSITWVDWSRGGAHPATFGRADITEEFFKRLFEGHQCRYNDQLSSICFLFARKFAPSALEPLLQVAPRVLGF 391
| Match Name | Stats | Description |
|---|---|---|
| A0A6A4LES4 | E-Value: 0.000e+0, PID: 71.65 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9459... [more] |
| A0A2R6Q308 | E-Value: 0.000e+0, PID: 71.91 | (Hemocyanin D chain like {ECO:0000313|EMBL:PSS0123... [more] |
| A0A1R3IVK5 | E-Value: 0.000e+0, PID: 72.12 | (Glycosyl transferase, family 14 {ECO:0000313|EMBL... [more] |
| A0A1R3H9D2 | E-Value: 0.000e+0, PID: 71.87 | (Glycosyl transferase, family 14 {ECO:0000313|EMBL... [more] |
| A0A498J7Q8 | E-Value: 0.000e+0, PID: 71.72 | (Uncharacterized protein {ECO:0000313|EMBL:RXH9151... [more] |
| A0A834GNQ5 | E-Value: 0.000e+0, PID: 71.13 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7139... [more] |
| A0A7J9EM58 | E-Value: 0.000e+0, PID: 71.10 | (Uncharacterized protein {ECO:0000313|EMBL:MBA0774... [more] |
| A0A7J9C8U6 | E-Value: 0.000e+0, PID: 71.10 | (Uncharacterized protein {ECO:0000313|EMBL:MBA0744... [more] |
| A0A7J9A6G8 | E-Value: 0.000e+0, PID: 71.10 | (Uncharacterized protein {ECO:0000313|EMBL:MBA0719... [more] |
| A0A6P5ZQI7 | E-Value: 0.000e+0, PID: 70.50 | (uncharacterized protein LOC111302967 {ECO:0000313... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |