Resource Type:
Polypeptide
Name:
DCAR_004679
Identifier:
DCAR_004679.mRNA-protein
Sequence:
MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAM
GMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFC
GQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLS
IILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKT
WGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATV
ASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLAS
SFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQ
TTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGL
LAAQGSCVVAMFIIISRTDWDHQARRAQELTGSTDVDDPAEDETVLVDDQ
SKANLKQNVNVKNDSPFNLV*
Sequence Length:
471
Sequence Checksum:
2dfc4cbffa9c0b9b1e83148eddd82e6a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_004679, derives from mRNA, DCAR_004679. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5NBN4 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 368/460 (80.00%), Postives = 415/460 (90.22%), Query Frame = 0
Match: A0A5N5NBN4 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 368/460 (80.00%), Postives = 415/460 (90.22%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQN 458
M+LTGL+LYSRSMISM+FLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL LVSIPIA LW NMKKIL+FCGQ+D+I+T+AQLYI YSLPDL AQ +LHPLR+YLRSQSITLPLTFCA+LSI+LH+PINY LVSV NLGIKGVALS VWTNFNLVGSLI+Y+M+SGV+ KTWGGI++EC+K W+ LL+LAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA +GL+SSF LGF+AL FA+MVR +WA MFT DADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCVV M I+++RTDW+ QA+RA+EL G S D D EDE + S ++L N
Sbjct: 95 MILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWVNMKKILLFCGQDDDISTEAQLYILYSLPDLIAQSILHPLRLYLRSQSITLPLTFCASLSILLHVPINYLLVSVFNLGIKGVALSAVWTNFNLVGSLIIYVMISGVFRKTWGGISSECLKGWRSLLSLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATIGLSSSFVLGFAALCFAVMVRKIWASMFTQDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLIVLARTDWECQAQRAKELIGNVSDDADHNEEDEKLKDTKNSSSSLDGN 554
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836E783 ((MATE efflux family protein {ECO:0000313|EMBL:KAG5249273.1}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 367/460 (79.78%), Postives = 415/460 (90.22%), Query Frame = 0
Match: A0A836E783 ((MATE efflux family protein {ECO:0000313|EMBL:KAG5249273.1}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 367/460 (79.78%), Postives = 415/460 (90.22%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQN 458
M+LTGL+LYSRSMISM+FLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL +VSIPIA LW NMKKIL+FCGQ+D+I+T+AQLYI YSLPDL AQ +LHPLR+YLRSQSITLPLTFCA+LSI+LH+PINY LVSV NLGIKGVALS VWTNFNLVGSLI+Y+M+SGV+ KTWGGI++EC+K W+ LL+LAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA +GL+SSF LGF+AL FA+MVR +WA MFT DADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCVV M I+++RTDW+ QA+RA+EL G S D D EDE + S ++L N
Sbjct: 63 MILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFIVSIPIALLWVNMKKILLFCGQDDDISTEAQLYILYSLPDLIAQSILHPLRLYLRSQSITLPLTFCASLSILLHVPINYLLVSVFNLGIKGVALSAVWTNFNLVGSLIIYVMISGVFRKTWGGISSECLKGWRSLLSLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATIGLSSSFVLGFAALCFAVMVRKIWASMFTQDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLIVLARTDWECQAQRAKELIGNVSDDADHTEEDEKLKDTKNSSSSLDGN 522
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2JYJ0 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 367/462 (79.44%), Postives = 414/462 (89.61%), Query Frame = 0
Match: A0A6N2JYJ0 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 367/462 (79.44%), Postives = 414/462 (89.61%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQNVN 460
M+LTGL+LYSRSMISMIFLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL LVSIPIA LW NMKKIL+FCGQ+D+I+T+AQLYI YSLPDL AQ +LHPLR+YLRSQSITLPLTFCA+LSI+LH+PINY LVSV NLGIKGVALS VWTNFNLVGSLI+Y+M+SGV+ KTWGGI++EC+K W+ LL+LAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA +GL+SSF LGF+AL FA+MVR +WA MFT D DIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCVV M I+++RTDW+ QA+RA+EL G S D D EDE + S ++L +
Sbjct: 63 MILTGLLLYSRSMISMIFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWVNMKKILLFCGQDDDISTEAQLYILYSLPDLLAQSILHPLRLYLRSQSITLPLTFCASLSILLHVPINYLLVSVFNLGIKGVALSAVWTNFNLVGSLIIYVMISGVFRKTWGGISSECLKGWRSLLSLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATIGLSSSFVLGFAALCFAVMVRKIWASMFTQDEDIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLIVLARTDWECQAQRAKELIGNVSDDADHNEEDEKLKDTKNSSSSLDGRIR 524
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835KGX8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9685781.1}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 367/460 (79.78%), Postives = 414/460 (90.00%), Query Frame = 0
Match: A0A835KGX8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9685781.1}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 367/460 (79.78%), Postives = 414/460 (90.00%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQN 458
M+LTGL+LYSRSMISM+FLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL LVSIPIA LW NMKKIL+FCGQED+I+T+AQLYI YSLPDL AQ +LHPLRIYLRSQS TLPLTFCA+LSI+LH+PINY LVSV NLGIKGVALS VWTNFNLVGSLI+Y+M+SGV+ KTWGG+++EC+K W+ LL+LAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA +GL+SSF LGF+AL FA+MVR +WA MFT DADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FY+G DF+GLWLGLLAAQGSCVV M I+++RTDW+ QA+RA+EL G S D D EDE + S ++L N
Sbjct: 63 MILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWFNMKKILLFCGQEDDISTEAQLYILYSLPDLIAQSILHPLRIYLRSQSATLPLTFCASLSILLHVPINYLLVSVFNLGIKGVALSAVWTNFNLVGSLIIYVMISGVFRKTWGGMSSECLKGWRSLLSLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATIGLSSSFVLGFAALCFAVMVRKIWASMFTQDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANINLGCFYLVGMPVAVWLSFYSGFDFKGLWLGLLAAQGSCVVTMLIVLARTDWECQAQRAKELIGNVSNDADHNEEDEKLKDTKNSPSSLDGN 522
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BXK5 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 373/469 (79.53%), Postives = 423/469 (90.19%), Query Frame = 0
Match: A0A5B7BXK5 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 373/469 (79.53%), Postives = 423/469 (90.19%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTGSTDVDDPAEDE-TVLVDDQSKANLK--QNVNVKNDSP 466
M+LTGL+LYSRSMISM+FLG LGELSLAGGALA+GFANITGYSILSGLAMGMEPICGQAFGA+R KLLGL +QRT+LLLLL SIPIAFLW NMKKIL+FCGQED+IAT+AQ YI YSLPDL AQ LLHPLRIYLR+QS+TLPLT+CATL+I+LHIPINY LVSVLNLGIKGVALSGVWTN NLVGSLIVYI++SGVY KTW G++TEC+++W L+NLA+PSC+SVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTTSLIYIFPSSLSF VSTRVGNELGAN+P+KAKLA IVGL+SSF LGFSAL FAIMVRN+WA MFT DA+I+ALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GAN+NLGCFYLVGMPVA+WL FYAG DFRGLWLGLLAAQGSC V M +++SRTDW+ QA+RA+ LTG+ VD+ +D D+++K +L N N+ + SP
Sbjct: 46 MILTGLLLYSRSMISMLFLGHLGELSLAGGALAVGFANITGYSILSGLAMGMEPICGQAFGAQRHKLLGLSLQRTVLLLLLTSIPIAFLWFNMKKILLFCGQEDDIATEAQSYILYSLPDLLAQSLLHPLRIYLRTQSVTLPLTYCATLAILLHIPINYLLVSVLNLGIKGVALSGVWTNINLVGSLIVYIIISGVYKKTWSGVSTECLRDWTSLINLAVPSCVSVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANRPEKAKLAAIVGLSSSFVLGFSALLFAIMVRNIWAIMFTQDAEIVALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANVNLGCFYLVGMPVAVWLSFYAGFDFRGLWLGLLAAQGSCAVTMLLVLSRTDWERQAQRAKVLTGTIAVDNGDDDGFHDNEDEKTKNSLNSLDNTNLDHRSP 514
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5PW23 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 369/460 (80.22%), Postives = 412/460 (89.57%), Query Frame = 0
Match: A0A4U5PW23 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 369/460 (80.22%), Postives = 412/460 (89.57%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQN 458
M+LTGL+LYSRSMISM+FLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL LVSIPIA LW NMKKIL+FCGQED+I+T+AQLYI YSLPDL AQ +LHPLRIYLRSQSITLPLTFCATLSI+LHIP+NY LVSV NLGIKGVALS VWTNF+LVGSL++Y+M+SGVY KTWGGI+ EC+K W+ LLNLAIPSCISVCLEWWWYEIMILLCGLL+NP ATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA VGL+SSF LGF+AL FA+MVR +WA MFT DA+IIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLW GLLAAQGSCVV M +++RTDW+ QA+RA+ELTG S D D EDE + S ++L N
Sbjct: 63 MILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWFNMKKILLFCGQEDDISTEAQLYILYSLPDLVAQSILHPLRIYLRSQSITLPLTFCATLSILLHIPVNYLLVSVFNLGIKGVALSAVWTNFSLVGSLVIYVMISGVYKKTWGGISLECLKGWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPTATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAAAVGLSSSFLLGFAALCFAVMVRKIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWFGLLAAQGSCVVTMLFVLARTDWECQAQRAKELTGNVSNDADHNDEDEKLKDPKNSSSSLDGN 522
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2N3B6 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 375/470 (79.79%), Postives = 413/470 (87.87%), Query Frame = 0
Match: A0A7N2N3B6 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 375/470 (79.79%), Postives = 413/470 (87.87%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTGSTDV--DDPAEDETV--LVDDQSKANLKQNVNVKNDSP 466
M+LTGL+LY RSMISM+FLG LGEL+LAGG+LAIGFANITGYS+LSGLAMGMEPICGQAFGAKRFKLLGL MQRT++LLL SIPI+FLW NMKKIL FCGQ+D+IATQAQ YI YSLPDL +Q LLHP+RIYLRSQSITLPLTFCATLSI+LHIPINYFLV VLNLGIKGVALSGVWTNFNLVGSLIVYI++S VY KTW GI+TEC K WK LLNLAIPSCISVCLEWWWYEIMILLCGLL+NP ATVASMG+LIQTT+LIYIFPSSLSFGVSTRVGNELGAN PKKA+LA IVGL+ SFTLGFSAL FA+ VR VWA MFT D +IIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINL CFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCVV M ++ RTDW+ QA+RA+ELT +T DD E E + D ++L NV +++SP
Sbjct: 78 MVLTGLLLYLRSMISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLLGLTMQRTVILLLFTSIPISFLWFNMKKILTFCGQKDDIATQAQSYILYSLPDLLSQSLLHPIRIYLRSQSITLPLTFCATLSILLHIPINYFLVFVLNLGIKGVALSGVWTNFNLVGSLIVYIIISKVYEKTWAGISTECFKGWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPEATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGANNPKKARLAAIVGLSFSFTLGFSALVFAVTVRKVWASMFTQDTEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLSCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLFVLCRTDWERQAQRAKELTETTTTIHDDNQEAERLKDKTQDSCFSSLDHNVE-RHNSP 546
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836DHT2 ((MATE efflux family protein {ECO:0000313|EMBL:KAG5228409.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 366/457 (80.09%), Postives = 413/457 (90.37%), Query Frame = 0
Match: A0A836DHT2 ((MATE efflux family protein {ECO:0000313|EMBL:KAG5228409.1}))
HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 366/457 (80.09%), Postives = 413/457 (90.37%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTGSTDVDDPAEDETVLVDDQSKANLKQ 457
MMLTGL+L+SRSMISM+FLGRLGEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+K+LG+ +QRTILLL L SIPIAFLW NMKKIL+FCGQED+IAT+AQ YI YSLPDL AQ +LHPLRIYLR+QSITLPLTFCATLSI+LHIPINY LVSVLNLGIKGVALS VWTNF+LVGSLI+YIM+SG+Y KTWGG++ EC+K WK LLNLAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT LIYIFPSSLSFGVSTRVGNELGAN P+KAKLA I GL SSF LGF+AL FA+MVR +WA MFT DA+IIALTSM+LPIIGLCELGNCPQTTGCGVLRG+ARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCV+ M ++++RTDW+ QA+RA+ELT + D +E D++SK + K
Sbjct: 64 MMLTGLLLFSRSMISMLFLGRLGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKILGITLQRTILLLFLTSIPIAFLWFNMKKILLFCGQEDDIATEAQFYILYSLPDLIAQSILHPLRIYLRTQSITLPLTFCATLSILLHIPINYLLVSVLNLGIKGVALSAVWTNFSLVGSLIIYIMISGLYKKTWGGVSLECLKGWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTGLIYIFPSSLSFGVSTRVGNELGANNPRKAKLAAITGLCSSFILGFTALCFAVMVRKIWASMFTQDAEIIALTSMILPIIGLCELGNCPQTTGCGVLRGSARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVLTMLVVLARTDWECQAQRAKELTETISNDSDLLEE----DEKSKEDTKN 516
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5P321 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 364/458 (79.48%), Postives = 414/458 (90.39%), Query Frame = 0
Match: A0A5N5P321 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 364/458 (79.48%), Postives = 414/458 (90.39%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTGSTDVDDPAEDETVLVDDQSKANLKQN 458
MMLTGL+L+SR+MISM+FLGRLGEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+K+LG+ +QRTILLL L SIPIAFLW NMKKIL+FCGQED+IAT+AQ YI YSLPDL +Q +LHPLRIYLR+QSITLPLTFCATLSI+LHIPINY LVSVLNLGIKGVALS VWTNF+LVGSLI+YIM+SG+Y KTWGG++ EC+K WK LLNLAIPSCISVCLEWWWYEIMILLCGLL+NPRATVASMGILIQTT LIYIFPSSLSFGVSTRVGNELGAN P+KAKLA I GL SSF LGF+AL FA+MVR +WA MFT DA+IIALTSM+LPIIGLCELGNCPQTTGCGVLRG+ARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCV+ M ++++RTDW+ QA+RA+ELT + D +E D++SK + K +
Sbjct: 64 MMLTGLLLFSRTMISMLFLGRLGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKILGITLQRTILLLFLTSIPIAFLWFNMKKILLFCGQEDDIATEAQFYILYSLPDLISQSILHPLRIYLRTQSITLPLTFCATLSILLHIPINYLLVSVLNLGIKGVALSAVWTNFSLVGSLIIYIMISGLYKKTWGGVSLECLKGWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTGLIYIFPSSLSFGVSTRVGNELGANNPRKAKLAAITGLCSSFILGFTALCFAVMVRKIWASMFTQDAEIIALTSMILPIIGLCELGNCPQTTGCGVLRGSARPKMGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVLTMLVVLARTDWECQAQRAKELTETISNDSDLLEE----DEKSKEDTKNS 517
BLAST of DCAR_004679 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9GW63 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 368/460 (80.00%), Postives = 411/460 (89.35%), Query Frame = 0
Match: B9GW63 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))
HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 368/460 (80.00%), Postives = 411/460 (89.35%), Query Frame = 0
Query: 1 MMLTGLILYSRSMISMIFLGRLGELSLAGGALAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLVMQRTILLLLLVSIPIAFLWCNMKKILIFCGQEDEIATQAQLYIFYSLPDLFAQCLLHPLRIYLRSQSITLPLTFCATLSIILHIPINYFLVSVLNLGIKGVALSGVWTNFNLVGSLIVYIMVSGVYNKTWGGITTECIKEWKPLLNLAIPSCISVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANQPKKAKLATIVGLASSFTLGFSALFFAIMVRNVWAKMFTLDADIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVALWLGFYAGLDFRGLWLGLLAAQGSCVVAMFIIISRTDWDHQARRAQELTG--STDVDDPAEDETVLVDDQSKANLKQN 458
M+LTGL+LYSRSMISM+FLGR GEL+LAGG+LAIGFANITGYSILSGL+MGMEPICGQAFGAKR+KLLGL +QRTILLL LVSIPIA LW NMKKIL+FCGQED+I+T+AQLYI YSLPDL AQ +LHPLRIYLRSQSITLPLTFCATLSI+LHIP+NY LVSV NLGIKGVAL VWTNF+LVGSL++Y+M+SGV KTWGGI+ EC+K W+ LLNLAIPSCISVCLEWWWYEIMILLCGLL+NP ATVASMGILIQTT+ IYIFPSSLSFGVSTRVGNELGAN P+KAKLA VGL+SSF LGF+AL FA+MVR +WA MFT DA+IIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK+GANINLGCFYLVGMPVA+WL FYAG DF+GLWLGLLAAQGSCVV M +++RTDW+ QA+RA+ELTG S D D EDE + S ++L N
Sbjct: 63 MILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFANITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWFNMKKILLFCGQEDDISTEAQLYILYSLPDLVAQSILHPLRIYLRSQSITLPLTFCATLSILLHIPVNYLLVSVFNLGIKGVALGAVWTNFSLVGSLVIYVMISGVSKKTWGGISLECLKGWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPTATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATVGLSSSFVLGFAALCFAVMVRKIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKIGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLFVLARTDWECQAQRAKELTGNVSNDADHNEEDEKLKDPKNSSSSLDGN 522
| Match Name | Stats | Description |
|---|---|---|
| A0A5N5NBN4 | E-Value: 0.000e+0, PID: 80.00 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| A0A836E783 | E-Value: 0.000e+0, PID: 79.78 | (MATE efflux family protein {ECO:0000313|EMBL:KAG5... [more] |
| A0A6N2JYJ0 | E-Value: 0.000e+0, PID: 79.44 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| A0A835KGX8 | E-Value: 0.000e+0, PID: 79.78 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9685... [more] |
| A0A5B7BXK5 | E-Value: 0.000e+0, PID: 79.53 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| A0A4U5PW23 | E-Value: 0.000e+0, PID: 80.22 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| A0A7N2N3B6 | E-Value: 0.000e+0, PID: 79.79 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| A0A836DHT2 | E-Value: 0.000e+0, PID: 80.09 | (MATE efflux family protein {ECO:0000313|EMBL:KAG5... [more] |
| A0A5N5P321 | E-Value: 0.000e+0, PID: 79.48 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
| B9GW63 | E-Value: 0.000e+0, PID: 80.00 | Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |