Resource Type:
Polypeptide
Name:
DCAR_002042
Identifier:
DCAR_002042.mRNA-protein
Sequence:
MAAAATTRASEIFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGS
SPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRN
LPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSG
PSALRASPGPDFCRSRRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRN
SNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEE
VPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQH
LETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDE
VMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSL
TSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSS
FVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLL
QAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRS
QGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA*
Sequence Length:
584
Sequence Checksum:
ca71e1d1af6f60eedfa3863aba42237a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002042, derives from mRNA, DCAR_002042. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YPU2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33842.1}))
HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 427/598 (71.40%), Postives = 500/598 (83.61%), Query Frame = 0
Match: A0A5B6YPU2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33842.1}))
HSP 1 Score: 865.529 bits (2235), Expect = 0.000e+0
Identity = 427/598 (71.40%), Postives = 500/598 (83.61%), Query Frame = 0
Query: 1 MAAAATTRASEIFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMC--------SGPS------ALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
MAA TT +IFQ ++N N+ EVSR EIQA+IAK VELRALHAALLQG+SPA+L+F +ASP SHH S SA DYPVFTP+YED+PLPGYQQIQLE+ NL + WDEYVL GGG+ D+TILSDYR EN SSRK L P EL N EPH+C +G S L SPG DF +S RRNSLGD + SSCNKC+PAI+SS+TD++++NGRNSN+ +PLTD+H S+HSQ P+ RGL SWLFP+LK+KH++ENSP+RTE EE QI KDLG++S+E LKKELM+A++++DAAL EV+EM+SS G+LK KL +LETYCE+LKKALRQAAQ EKLGN+P +G S+D + EN M VS+E++VEGF+Q+VSEARLSVK FCK+LVGQIEETD L +NLN LLQPYKLS+ S +SK VLYHLEAIINQSLYQDFENCVFQKNGSPKLLD +Q R AQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIT LNWTRPWPEQLLQ+FFVAAKCIWLLHLLAFSF+PPLGILRVEE+RSFD HYMED+L+DRQRS S+VKIM+MPGFYVQD+VL+CKV+CRYK VA
Sbjct: 1 MAATTTT---QIFQ-NHNSNNNEVSREEIQASIAKVVELRALHAALLQGNSPANLRFPSASPLSHH-ASQFSAHDYPVFTPSYEDEPLPGYQQIQLENPNLSDCWDEYVL-GGGNGDETILSDYRKENASSRKEL-PSELVNLEPHICPAEDQRSVTGSSCANHITVLGTSPGTDFYKSSRRNSLGDFKPASSCNKCRPAILSSETDSALKNGRNSNIVVPLTDSHSSVHSQ-PKNRGLNLSWLFPRLKKKHRNENSPNRTESEEASQILKDLGVMSVETLKKELMEANESKDAALMEVAEMKSSLGDLKHKLDYLETYCEELKKALRQAAQVP-----EKLGNLPKRGKSIDGNAENLMPVSEEILVEGFLQVVSEARLSVKHFCKSLVGQIEETDTCLMENLNLLLQPYKLSINSNFSKLVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDPQQDRHAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTLNWTRPWPEQLLQSFFVAAKCIWLLHLLAFSFNPPLGILRVEENRSFDSHYMEDILMDRQRSHRPSRVKIMLMPGFYVQDRVLRCKVLCRYKSVA 585
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C6Q6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8549557.1}))
HSP 1 Score: 853.203 bits (2203), Expect = 0.000e+0
Identity = 414/594 (69.70%), Postives = 496/594 (83.50%), Query Frame = 0
Match: A0A5J5C6Q6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8549557.1}))
HSP 1 Score: 853.203 bits (2203), Expect = 0.000e+0
Identity = 414/594 (69.70%), Postives = 496/594 (83.50%), Query Frame = 0
Query: 4 AATTRASEIFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
AATT ++IFQ +N N+ EVSR EIQA+IAK ELRAL AAL+QG+SPA+L+F +ASP SH SH SA DYPVFTP+YED+PLPGYQQI+LE+ L E WDEY++ GGG+ D+TI DY+ N SSRK LL EL N E HMC + LR SPG DF +S RRNSLGD +SVSSCNKCKPAI+S++ D++M+NGRNSN+ +PLTD+H S+ SQQ + RGL SWLFP+LK+K+K ENSP+RTE E+ QI KDLG++S+E KKELM+A+++++AAL EV+EM+SS GELKQKL++LETYCE+LKKALRQAAQ K+ Q EKLG++P +G S++ + E M VS+EVMVEGF+Q+VSEARLSVKQFCKTLVGQ+EETD +L +NLN LLQPYKLS+ SK+SK VLYHLEAIINQSLYQDFENCVFQKNGSPKLLD +Q R AQFSSFVALRNLSWNEVLRKGTKYYS++FSKFCDQKMSCIIT LNWTRPWPEQLLQ+FFVAAKCIWLLHLLAFSF+PPLGI+RV+E+RSFD +YMED+L+DRQRS G S+VK+MVMPGFYVQD VL+CKV+CRYK VA
Sbjct: 2 AATT--TQIFQNHHNSNNNEVSREEIQASIAKVAELRALRAALMQGNSPANLRFPSASPLSHP-ASHFSAHDYPVFTPSYEDEPLPGYQQIRLENPTLSECWDEYLI-GGGNGDETIQLDYKKGNASSRKELLS-ELVNLESHMCPAEDQKSVTGSCANQITVLRTSPGTDFYKSSRRNSLGDLKSVSSCNKCKPAIVSTEADSAMKNGRNSNIVVPLTDSHSSVQSQQ-KNRGLNLSWLFPRLKKKNKYENSPNRTESEDASQILKDLGVMSVETWKKELMEANESKEAALMEVTEMKSSLGELKQKLEYLETYCEELKKALRQAAQAKDSQVPEKLGSLPKRGKSINGNAEKLMPVSEEVMVEGFLQVVSEARLSVKQFCKTLVGQVEETDSSLMENLNLLLQPYKLSINSKFSKVVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDPQQDRHAQFSSFVALRNLSWNEVLRKGTKYYSDDFSKFCDQKMSCIITTLNWTRPWPEQLLQSFFVAAKCIWLLHLLAFSFNPPLGIIRVDENRSFDSYYMEDILMDRQRSHGPSRVKVMVMPGFYVQDSVLRCKVLCRYKSVA 589
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1WSL0 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1227696.1}))
HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 422/597 (70.69%), Postives = 495/597 (82.91%), Query Frame = 0
Match: A0A6A1WSL0 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1227696.1}))
HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 422/597 (70.69%), Postives = 495/597 (82.91%), Query Frame = 0
Query: 4 AATTRASEIFQGSNN---KNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
AA T AS+IF+ NN + E+SR EIQAAIAKAVELRALHAAL+QG+SP +++F + SPAS H S LSAQDYPVFTP+YED+PLPGY QI L+ R LPE+WDEY + G G+E T LSD+R EN+SSRKGL P L + + H+C + L+ SPG D+ +S RRNSLGD +SVSSCN+CKPAII+S+++N +RN +NSN+ +PLTD+H S+ SQ ++RG+ SWLFP+LK+KHK+ENSP+RTE EEV QIF+D GI+S+E LKKEL++A++ RDAAL EVSEM+ S GELKQKL++LE+YCE+LKKALRQA Q K+ Q EKLG P +G S+D + ENSM VS+EVMVEGF+QIVSEARLSVKQFCKTLV QIEETD TL DNLN LLQPYKLSL SKYSKAVLYHLEA INQSLYQDFENCVFQKNGSPKLLD +Q RQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMS IIT LNW RPWPEQLLQAFFVAAKCIWLLHLLAFSF+PPLGILRVEE+RSFD YMED+ ++RQRS G S+VK+MVMPGFYVQD+VL+CKV+CRYKPVA
Sbjct: 2 AAATAASQIFENHNNGSSNTNHEISRQEIQAAIAKAVELRALHAALMQGNSPVNVRFPSPSPASRH-ASQLSAQDYPVFTPSYEDEPLPGYPQIPLKDRTLPETWDEYGIGGNGNE--TRLSDHR-ENSSSRKGL-PSGLVSLDSHICPAEDQKSVTGYCANHITVLQTSPGTDYFKSSRRNSLGDFKSVSSCNRCKPAIITSESENVIRNNKNSNIVVPLTDSHSSVQSQS-KSRGV-ISWLFPRLKKKHKNENSPNRTESEEVSQIFRDFGIMSVETLKKELIEANENRDAALMEVSEMKCSLGELKQKLEYLESYCEELKKALRQAMQAKDSQMPEKLGTFPKRGESLDVNGENSMPVSEEVMVEGFLQIVSEARLSVKQFCKTLVSQIEETDNTLVDNLNLLLQPYKLSLNSKYSKAVLYHLEAFINQSLYQDFENCVFQKNGSPKLLDPQQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSSIITTLNWIRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRSFDPQYMEDMFMERQRSHGASRVKVMVMPGFYVQDRVLRCKVLCRYKPVA 591
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SL94 ((Uncharacterized protein {ECO:0000313|EMBL:CBI16422.3}))
HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 416/597 (69.68%), Postives = 500/597 (83.75%), Query Frame = 0
Match: D7SL94 ((Uncharacterized protein {ECO:0000313|EMBL:CBI16422.3}))
HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 416/597 (69.68%), Postives = 500/597 (83.75%), Query Frame = 0
Query: 4 AATTRASEIFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLES-RNLPESWDEYVLEG-GGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKG-ISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
AA T A+++FQG N+ D EVSR EIQAAIAKAVELRALHAAL+QG+SPA+LK+ ASP S SH SAQDYPVFTP+Y D+PLPGY Q+ +E+ RNL ESWD +EG GG++++TI+SDY+ E SSRKGL P L + EPH+C + L+ SPG DF +S RRNSLG+ +S+SSCNKC+PAIIS++ +N+++N + S+ +PLTD+H S+ SQ P+ RG+ SWLFP+LK+KHK+E+SP+RTE EEV QIFKDLGI+S+E LKKELM A+++RDAAL EV+EM+SS GELKQKL++LETYCE+LK+ L+Q AQ K+ Q EKL ++P +G S+D + EN + VS+EVMVEGF+QIVSEARLSVKQFCK L+GQIEE+D TL DNLN+LLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNG+ KLLD Q RQA+FSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCII+ LNWTRPWPEQLLQ+FFV+AKCIWLLHLLAFSF+PPLGILRVEE+RSFD HYMED+ +DRQRSQG S+VKIMVMPGFYVQD+VL+CKV+CRYK VA
Sbjct: 2 AAATPATQVFQGHNSNGDHEVSRQEIQAAIAKAVELRALHAALIQGNSPANLKYPTASPVSRPP-SHFSAQDYPVFTPSYGDEPLPGYHQLHVENDRNLSESWD---MEGLGGNDNETIMSDYKKE-ISSRKGL-PSGLVSLEPHVCPTEDQKSLTSACANHITVLQTSPGTDFFKSSRRNSLGEFKSLSSCNKCRPAIISTEAENTVKNSKGSSFVVPLTDSHSSVQSQ-PKNRGVSLSWLFPRLKKKHKNESSPNRTESEEVSQIFKDLGIMSIETLKKELMDANESRDAALMEVAEMKSSLGELKQKLEYLETYCEELKRVLKQTAQAKDLQAPEKLRSLPKRGKSSIDGNGENFIPVSEEVMVEGFLQIVSEARLSVKQFCKILIGQIEESDNTLTDNLNSLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGTAKLLDPHQDRQARFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIISTLNWTRPWPEQLLQSFFVSAKCIWLLHLLAFSFNPPLGILRVEENRSFDPHYMEDMFMDRQRSQGPSRVKIMVMPGFYVQDRVLRCKVLCRYKSVA 591
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438ELT6 ((IRK-interacting protein {ECO:0000313|EMBL:RVW48680.1}))
HSP 1 Score: 839.336 bits (2167), Expect = 0.000e+0
Identity = 415/596 (69.63%), Postives = 499/596 (83.72%), Query Frame = 0
Match: A0A438ELT6 ((IRK-interacting protein {ECO:0000313|EMBL:RVW48680.1}))
HSP 1 Score: 839.336 bits (2167), Expect = 0.000e+0
Identity = 415/596 (69.63%), Postives = 499/596 (83.72%), Query Frame = 0
Query: 5 ATTRASEIFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLES-RNLPESWDEYVLEG-GGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKG-ISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
A T A+++FQG N+ D EVSR EIQAAIAKAVELRALHAAL+QG+SPA+LK+ ASP S SH SAQDYPVFTP+Y D+PLPGY Q+ +E+ RNL ESWD +EG GG+++ TI+SDY+ E SSRKGL P L + EPH+C + L+ SPG DF +S RRNSLG+ +S+SSCNKC+PAIIS++T+N+++N + S+ +PLTD+H S+ SQ P+ RG+ SWLFP+LK+KHK+E+SP+RTE EEV QIFKDLGI+S+E LKKELM A+++RDAAL EV+EM+SS GELKQKL++LETYCE+LK+ L+Q AQ K+ Q EKL ++P +G S+D + EN + VS+EVMVEGF+QIVSEARLSVKQFCK L+GQIEE+D TL +NLN+LLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNG+ KLLD Q RQA+FSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCII+ LNWTRPWPEQLLQ+FFV+AKCIWLLHLLAFSF+PPLGILRVEE+RSFD HYMED+ +DRQRSQG S+VKIMVMPGFYVQD+VL+CKV+CRYK VA
Sbjct: 3 AATPATQVFQGHNSNGDHEVSRQEIQAAIAKAVELRALHAALIQGNSPANLKYPTASPVSRPP-SHFSAQDYPVFTPSYGDEPLPGYHQLHVENDRNLSESWD---VEGLGGNDNATIMSDYKKE-ISSRKGL-PSGLVSLEPHVCPTEDQKSVTSACANHITVLQTSPGTDFFKSSRRNSLGEFKSLSSCNKCRPAIISTETENTVKNSKGSSFVVPLTDSHSSVQSQ-PKNRGVSLSWLFPRLKKKHKNESSPNRTESEEVSQIFKDLGIMSIETLKKELMDANESRDAALMEVAEMKSSLGELKQKLEYLETYCEELKRVLKQTAQAKDLQAPEKLRSLPKRGKSSIDGNGENFIPVSEEVMVEGFLQIVSEARLSVKQFCKILIGQIEESDNTLTENLNSLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGTAKLLDPHQDRQARFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIISTLNWTRPWPEQLLQSFFVSAKCIWLLHLLAFSFNPPLGILRVEENRSFDPHYMEDMFMDRQRSQGPSRVKIMVMPGFYVQDRVLRCKVLCRYKSVA 591
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AF82 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528117.1}))
HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0
Identity = 417/583 (71.53%), Postives = 484/583 (83.02%), Query Frame = 0
Match: A0A5J5AF82 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528117.1}))
HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0
Identity = 417/583 (71.53%), Postives = 484/583 (83.02%), Query Frame = 0
Query: 4 AATTRASEIFQGSNNKN----DGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP--SALRASPGPDFCRS--RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCR 578
AATT ++IFQ N+ + + EVSR EIQAAI+KAVELRALHAALL+G+SPA+L+F +ASPAS S SA DYPVFTP+YED+PLPGYQQ++ +SR++ E WDEY L G GDE TILSDY+ N SSRKGL P EL + E H C +++ S G D +S RRNSLGD + VSSCNKCKPA ISS+TD++MRNG+NSN+ +PLTD+H S+ Q P+ RGL SWLFP+LK+K+K+ENSP RTE EEV QI KDLGI+S+E LKKELM+A+ RDAAL EV+EM+SS ELK KL++LETYCE+LK ALRQAAQ K+ Q FEKLGN+P +G S+D + EN M VS+E+MVEGF+QIVSEARLSVKQFCKTLVGQIEE D L +N+N +LQPYKLSL SK SKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLD +Q R AQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIT LNWTRPW EQLLQ+FFV AKCIWLLHLLAFSF+P LGILRVEE+RSFD HYMED+L+DRQRS G S VKIMVMPGFYVQD+VL+CKV+CR
Sbjct: 2 AATT--AQIFQNHNDNHRHNSNNEVSREEIQAAISKAVELRALHAALLRGNSPANLRFPSASPASDL-ASQFSAYDYPVFTPSYEDEPLPGYQQLRSDSRSISECWDEYGLGGNGDE--TILSDYKKMNASSRKGL-PSELLSLEIHTCPAEDQNSVTDSCGTDLYKSSRRRNSLGDFKLVSSCNKCKPATISSETDSAMRNGKNSNIVVPLTDSHSSVQPQ-PKNRGLNLSWLFPRLKKKNKNENSPIRTEAEEVSQILKDLGIMSVETLKKELMEANARRDAALMEVTEMKSSLRELKPKLEYLETYCEELKNALRQAAQSKDSQVFEKLGNLPKRGKSIDGNTENLMPVSEEIMVEGFLQIVSEARLSVKQFCKTLVGQIEENDNILMENINLILQPYKLSLNSKNSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDPQQDRHAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTLNWTRPWSEQLLQSFFVGAKCIWLLHLLAFSFNPHLGILRVEENRSFDSHYMEDILVDRQRSHGPSWVKIMVMPGFYVQDRVLRCKVLCR 577
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5XNB2 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4312618.1}))
HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 418/596 (70.13%), Postives = 485/596 (81.38%), Query Frame = 0
Match: A0A6J5XNB2 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4312618.1}))
HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 418/596 (70.13%), Postives = 485/596 (81.38%), Query Frame = 0
Query: 1 MAAAATTRASEIFQGSNNKN-DGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLE-GGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYK 580
MAA T R Q SNN N EVSR EIQAAIAKAVELRALHAAL+QGSSPA+L+F ++SP SH S SAQDYPVFTP+YED+PLPGY Q+ +R L ESWDEY LE G GDE +LS Y+ +N+SSRKG P +L N E H C + L+ SP +F RS RRNSLGD S+SSCN+CKPAII+S++++ MRN RNSN +PLTD+H S+ SQ P++RG+ SWLFP+L++KH++E+SP+RTE EEV Q+++DLGI+S+E LKKEL+QA++ RDAAL EVSEM+SS GELKQKL +LETYCE+LK+ALRQA K+ Q EKLGN P +G S D + EN M VS+EV+VEGF+QIVSEARLSVKQFCK LV QIE TD TL DNLN LLQP+KLSL+SKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLD +Q RQAQFSSFVALRNLSWNEVLRKGTKYY EEFSKFCDQKMSCIIT LNWTRPWPEQ+LQAFFVA KCIWLLHLLAFSF+PPLGILRVEE+RSFD HYMED+ +DRQR+ G S+VKIMVMPGFYVQDKVL+CKV+CRYK
Sbjct: 1 MAAFTTDRKKFRDQESNNNNIKNEVSRQEIQAAIAKAVELRALHAALVQGSSPANLRFPSSSPGSHP-ASQFSAQDYPVFTPSYEDEPLPGYHQVPTMNRTLSESWDEYGLEEGNGDE--AVLSSYK-DNSSSRKGF-PSDLANFESHACPAEDHKSVTGSCTNQITVLQTSPANEFYRSSRRNSLGDFNSLSSCNRCKPAIITSESESGMRNCRNSNTVVPLTDSHSSVQSQ-PKSRGV-ISWLFPRLRKKHRNESSPNRTESEEVSQVYRDLGIMSIETLKKELIQANENRDAALMEVSEMKSSVGELKQKLDYLETYCEELKRALRQATHAKSCQTPEKLGNFPKRGKSNDGNAENLMPVSEEVLVEGFLQIVSEARLSVKQFCKILVAQIEVTDNTLVDNLNMLLQPFKLSLSSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDPQQARQAQFSSFVALRNLSWNEVLRKGTKYYCEEFSKFCDQKMSCIITTLNWTRPWPEQVLQAFFVATKCIWLLHLLAFSFNPPLGILRVEENRSFDPHYMEDMFMDRQRTHGSSRVKIMVMPGFYVQDKVLRCKVLCRYK 589
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TCD3 ((IRK-interacting protein-like {ECO:0000313|RefSeq:XP_011080253.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 406/586 (69.28%), Postives = 481/586 (82.08%), Query Frame = 0
Match: A0A6I9TCD3 ((IRK-interacting protein-like {ECO:0000313|RefSeq:XP_011080253.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 406/586 (69.28%), Postives = 481/586 (82.08%), Query Frame = 0
Query: 12 IFQGSNNKNDGEVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPD-FCRSRRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
I+Q ++N E++RH+IQAA AKAVELRALHAAL+Q +SPA+L+ ++S H H SAQDYPVFTP+YED+PLPGYQQI LE+RN ESW EY L+ G + D+++LSDYR N SSRKG P EL N E H+C S LRASPGPD + +SRRNS+GD +SVSSCNKCKPA+IS+D D +NGR SN+ +PLTD+H S+HSQ PR +GL FSWLFP+LK+K+K+ENSP R + EEV Q+ DLG+LS++ LK+ELM+AH++RDAAL+EV+EM+SS GEL QKL++LETYCE+LKKALRQA Q KN Q EKL N+P +G SVD S E+SM VS+EVMVEGF+QIVSEARLSVKQFCKTLVGQIEE+D +L DNLN+LLQPYKLS+ SKYSK+VLYHLEAIINQSLYQDFENCVFQKNG PKLLD +Q RQA+F FVALRNLSWNEVLRKGTK+YS+EFSKFCDQKMS IIT L WTRPWPEQLLQAFFVAAKCIWLLHLLAFSF PPLGILRV+E+R F+ HYMEDV ++QR QG S+VKI+VMPGFYV DKVL+CKV+CRYK V
Sbjct: 4 IYQ-EQSENGNEINRHDIQAAFAKAVELRALHAALVQANSPANLRLPSSSSPVSRHAPHFSAQDYPVFTPSYEDEPLPGYQQILLENRNYAESWGEYNLDVG-NIDESVLSDYRTANASSRKGF-PSELMNLERHICPAEDQNSVTGSCANNISVLRASPGPDNYYKSRRNSMGDIKSVSSCNKCKPAVISNDLDGLSKNGRKSNIVVPLTDSHSSLHSQ-PRNKGLSFSWLFPRLKKKNKNENSPIRPQAEEVSQMLTDLGMLSVDTLKRELMEAHESRDAALSEVAEMKSSLGELSQKLEYLETYCEELKKALRQAVQVKNPQPAEKLTNLPKRGKSVDGSAESSMPVSEEVMVEGFLQIVSEARLSVKQFCKTLVGQIEESDHSLIDNLNSLLQPYKLSVNSKYSKSVLYHLEAIINQSLYQDFENCVFQKNGMPKLLDPQQERQARFQLFVALRNLSWNEVLRKGTKFYSDEFSKFCDQKMSGIITTLGWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFDPPLGILRVDENRPFEPHYMEDVFAEKQRPQGPSRVKILVMPGFYVHDKVLRCKVLCRYKSVV 585
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A660KS78 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8037089.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 420/604 (69.54%), Postives = 496/604 (82.12%), Query Frame = 0
Match: A0A660KS78 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8037089.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 420/604 (69.54%), Postives = 496/604 (82.12%), Query Frame = 0
Query: 1 MAAAATTRASEIFQGSNNKNDG-----EVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP--------------SALRASPGPDFCRS-RRNSLGDNRSVSS-CNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
MAAAATT S+IF+ N+ ++ E+SR EIQ AIAKAVELRALHAAL+QG+SPA+L+F ++SPASH S SAQDYPVFTP+YED+PLPGY QI ++ R + ESWDEY L G G+E T+LSDY+ EN+SSRKGL P L + H+C + L+ SPG DF +S RRNSLGD +SVSS CN+CKPAII+++++N +N RNSN+ +PLTD+H SI SQ P+ RG+ S LFP+LK+K+K+ENSP+R E EEV QIFKDLGI+S+E LKK+LM+A++ RDAAL EV+ M+SS GEL+QKL++LETYCE+LK+ALRQA Q K+ Q EKLG P +G S D S EN M V++EVMVEGF+Q+VSEARLSVKQFCKTLVG IEETD TL DNLN LLQPYKLSL SKYSKAVLYHLEA INQSLYQDFENC+FQKNG+PKLLD +Q RQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIT LNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSF+PPLGILRV+E+RSFD HYMED+ ++RQRS G S+VK+MVMPGFYVQD+VL+CKVVCRYK VA
Sbjct: 1 MAAAATT-VSQIFENRNSNSNSNNTNQEISRQEIQTAIAKAVELRALHAALMQGNSPANLRFPSSSPASHT-TSQFSAQDYPVFTPSYEDEPLPGYHQIPIKDRAISESWDEYGLGGYGNE--TVLSDYK-ENSSSRKGL-PSGLAGLDSHICPAEEDHKSVTGSCATHITVLQTSPGNDFFKSSRRNSLGDFKSVSSSCNRCKPAIITTESENLTKNSRNSNIIVPLTDSHSSIQSQ-PKNRGV-ISRLFPRLKKKNKNENSPNRAESEEVSQIFKDLGIMSIETLKKKLMEANENRDAALMEVAGMKSSLGELRQKLEYLETYCEELKRALRQAVQTKDSQIPEKLGTFPKRGKSSDGSGENLMPVNEEVMVEGFLQVVSEARLSVKQFCKTLVGHIEETDNTLMDNLNLLLQPYKLSLNSKYSKAVLYHLEAFINQSLYQDFENCIFQKNGTPKLLDPQQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITMLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVDENRSFDPHYMEDMFMERQRSHGPSRVKVMVMPGFYVQDRVLRCKVVCRYKSVA 596
BLAST of DCAR_002042 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KL23 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL01p006043:mrna}))
HSP 1 Score: 825.854 bits (2132), Expect = 0.000e+0
Identity = 415/598 (69.40%), Postives = 488/598 (81.61%), Query Frame = 0
Match: A0A7N2KL23 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL01p006043:mrna}))
HSP 1 Score: 825.854 bits (2132), Expect = 0.000e+0
Identity = 415/598 (69.40%), Postives = 488/598 (81.61%), Query Frame = 0
Query: 4 AATTRASEIFQGSNNKNDG----EVSRHEIQAAIAKAVELRALHAALLQGSSPASLKFSAASPASHHHVSHLSAQDYPVFTPTYEDDPLPGYQQIQLESRNLPESWDEYVLEGGGDEDKTILSDYRMENTSSRKGLLPFELRNSEPHMCSGP-------------SALRASPGPDFCRS-RRNSLGDNRSVSSCNKCKPAIISSDTDNSMRNGRNSNLTLPLTDTHISIHSQQPRTRGLGFSWLFPKLKRKHKSENSPSRTEPEEVPQIFKDLGILSMEMLKKELMQAHDTRDAALTEVSEMRSSFGELKQKLQHLETYCEDLKKALRQAAQGKNYQGFEKLGNVPGKGISVDASLENSMAVSDEVMVEGFVQIVSEARLSVKQFCKTLVGQIEETDKTLKDNLNTLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKLLDLKQHRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITNLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFSPPLGILRVEESRSFDQHYMEDVLIDRQRSQGGSQVKIMVMPGFYVQDKVLKCKVVCRYKPVA 583
AA T AS++F+ +N N E+SR +I+AAIAKAVELR LHAAL+QGSSP++L+F + SPAS VS SAQDYPVFTP+YED+P PGY QI L+ L ESWDEY L G G+E T LSDY+ EN+SSRKGL P L + H+C + L+ SPG D+ +S RRNSLG+ +SVSSCN+CKPA+I+++++ + RN RNSN+ +PLTD+H SI SQ P+ RG+ SWLFP+LK+K+++ENSP+R E E+V QI+KD GI+S+E LKKELM+A++ RDAAL EVSEM+SS GELK KL++LETYCE+LKKAL+QA Q K+ Q E LGN P +G S D + EN M VS EVMVEGF+QIVSEARLSVKQFCKTLVGQIEETD TL DNLNTLLQPYKLSL+SKYSKAVLYHLEA INQSLYQDFEN VFQKNGSPKLLD +Q RQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIT LNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSF+PPLGILRVEE+R FD HYMED+ ++RQ+S G S+VKIMVMPGFYVQD+VL+CKV+CRYK VA
Sbjct: 2 AAATTASQVFENHSNNNSSNTNREISRQDIRAAIAKAVELRTLHAALMQGSSPSNLRFPSPSPASRP-VSQFSAQDYPVFTPSYEDEPTPGYPQIPLKDHTLSESWDEYGLGGNGNE--TFLSDYK-ENSSSRKGL-PCGLASVGSHICPAEDQKSVTGSCANQITVLQTSPGNDYFKSNRRNSLGEFKSVSSCNRCKPAVITTESETATRNSRNSNIVVPLTDSHTSIQSQ-PKNRGV-ISWLFPRLKKKNRNENSPNRAESEDVSQIYKDFGIMSIETLKKELMEANENRDAALMEVSEMKSSLGELKHKLEYLETYCEELKKALKQAMQAKDSQVPETLGNFPKRGKSSDVNGENLMPVSTEVMVEGFLQIVSEARLSVKQFCKTLVGQIEETDNTLVDNLNTLLQPYKLSLSSKYSKAVLYHLEAFINQSLYQDFENSVFQKNGSPKLLDPQQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRMFDPHYMEDMFMERQKSNGPSRVKIMVMPGFYVQDRVLRCKVLCRYKSVA 592
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YPU2 | E-Value: 0.000e+0, PID: 71.40 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3384... [more] |
| A0A5J5C6Q6 | E-Value: 0.000e+0, PID: 69.70 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8549... [more] |
| A0A6A1WSL0 | E-Value: 0.000e+0, PID: 70.69 | (Uncharacterized protein {ECO:0000313|EMBL:KAB1227... [more] |
| D7SL94 | E-Value: 0.000e+0, PID: 69.68 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1642... [more] |
| A0A438ELT6 | E-Value: 0.000e+0, PID: 69.63 | (IRK-interacting protein {ECO:0000313|EMBL:RVW4868... [more] |
| A0A5J5AF82 | E-Value: 0.000e+0, PID: 71.53 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A6J5XNB2 | E-Value: 0.000e+0, PID: 70.13 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4312... [more] |
| A0A6I9TCD3 | E-Value: 0.000e+0, PID: 69.28 | (IRK-interacting protein-like {ECO:0000313|RefSeq:... [more] |
| A0A660KS78 | E-Value: 0.000e+0, PID: 69.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8037... [more] |
| A0A7N2KL23 | E-Value: 0.000e+0, PID: 69.40 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |