Resource Type:
Polypeptide
Name:
DCAR_003197
Identifier:
DCAR_003197.mRNA-protein
Sequence:
MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCRFNAEAASSSM
ASSPLARRAFTGNAGFPAPVMFPVVGGQDVVVWEDKTEKPEANLSEVEMM
KERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQ
KKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNL
PALKKLDAMLITVLDGFHDLEFWYVERGVAGDDCDTYPSAFSSGRPSVRQ
EEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMD
IPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEV
ANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQR
AESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNI
MARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHT
PYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLPDLEK
LWSYAGNLSARRISGDAPERD*
Sequence Length:
572
Sequence Checksum:
df6983931c8f7439440deec47c8a72de
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003197, derives from mRNA, DCAR_003197. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AY82 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 439/579 (75.82%), Postives = 499/579 (86.18%), Query Frame = 0
Match: A0A5J5AY82 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 439/579 (75.82%), Postives = 499/579 (86.18%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCRFNAEAASSSMASSPLARRAFTGNAGFPA----PVMFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGV---AGDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSE+ DQQS+ R GSYSLSADVSESESSSSFS R++AE AS+SMASSPLARR T N+GFP PVM PV+GG+DVV W++K+EK E +LSE+EMMKERFAKLLLGEDMSGGGKGV TALAISNAITNLSATVFGELWRLEPLA QKKAMWCREME LLCV++SIVELVPS+QQFPGGGTYEVM T+PRSDLY NLPALKKLDAMLI++L+ F + EFWYV+RG+ +DCD + S+ S GRPS+RQEEKWWLPCPKVPP+GL+EDARK+LQQCRDCTNQILKAA+AINS+VL EM+IPSAYL+TLPK+GKACLGD +YRYITADQ SPECLLDCLDLSSEH LEV NRIEAAVHVWK K ++KH++++K+K SSW GKVKGLV D KN LAQRAE+LLH L+ R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE SFF++G LG PIQKRM PSPFSI+HTPYTSPFATP FCSSPPI SP R P+ N + N+K E P+P DLE++WSYAG LSAR++SGDAPERD
Sbjct: 1 MGSVSSEDGFDQQSE-RCGSYSLSADVSESESSSSFSCRRYDAEGASTSMASSPLARRPVTCNSGFPVVLPPPVMLPVIGGKDVV-WDEKSEKREVDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWCREMEWLLCVTESIVELVPSVQQFPGGGTYEVMETRPRSDLYTNLPALKKLDAMLISILESFCNTEFWYVDRGIIVAEANDCDAFQSSTSGGRPSIRQEEKWWLPCPKVPPSGLSEDARKRLQQCRDCTNQILKAAMAINSSVLTEMEIPSAYLETLPKSGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVVNRIEAAVHVWKQKDRKKHTSHLKTKRSSWGGKVKGLVADGEKNQFLAQRAETLLHSLRFRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCAAAESASFFSRGGLGGLPIQKRMSPSPFSIQHTPYTSPFATPIFCSSPPIAGSPCRA-PPLNKNSL----NQKMEKPIPADLERMWSYAGKLSARKVSGDAPERD 572
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3IBL9 ((Plant specific Rop nucleotide exchanger, PRONE {ECO:0000313|EMBL:OMO80006.1}))
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 437/576 (75.87%), Postives = 493/576 (85.59%), Query Frame = 0
Match: A0A1R3IBL9 ((Plant specific Rop nucleotide exchanger, PRONE {ECO:0000313|EMBL:OMO80006.1}))
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 437/576 (75.87%), Postives = 493/576 (85.59%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCRFNAEAASSSMASSPLARRAFTGNAGFPAPVMFPVVGGQDVVVWED-KTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPL-PDLEKLWSYAGNLSARRISGDAPERD 571
M ++SS++CSDQQS+ R GSYSLSADVSESES SSFS RF+ E SSSM SSP R G GF PVM PV+GG+DVV+W+D K EK + +LSEVEMMKERFAKLLLGEDMSGGGKGV TALAISNAITNLSATVFGELWRLEPLA Q+KAMW REME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLY+NLPALKKLDAMLI++LDGF + EFWYV+RG+ G DCD YPS+ S GRPS+RQEEKWWLPCPKVP NGL+EDARKKLQQCRDCTNQILKAA+AINS+VLAEM+IP+AYL+TLPKNGKACLGD +YRYITAD+ SPECLLDCLDLS+EH LE+ANRIEAAVHVWK K Q+KH N+IK + SSW GKVKGLV D KN+ LAQRAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S F++ L PIQKRM PSPFSI+HTPY SPFATPTFCSS P+T SP RV + ++ NG+K P+ K E P + E++WSY G+LSARRIS +APERD
Sbjct: 1 MGSVSSDDCSDQQSE-RCGSYSLSADVSESESCSSFSCRRFDGEGCSSSMTSSP--RLPAAGGFGFQVPVMLPVIGGKDVVIWDDEKPEKRDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQRKAMWRREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYINLPALKKLDAMLISMLDGFRETEFWYVDRGIVLGDGGDCDAYPSSVSGGRPSIRQEEKWWLPCPKVPANGLSEDARKKLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKNGKACLGDIIYRYITADRFSPECLLDCLDLSTEHHTLEIANRIEAAVHVWKQKDQKKHVNHIKVRRSSWGGKVKGLVADGEKNNFLAQRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCAAAETISLFSRSGLSGLPIQKRMSPSPFSIQHTPYASPFATPTFCSSTPLTGSPGRVPSSLKRNGLKEEPDWKFEKPFAAEFERVWSYTGSLSARRISENAPERD 573
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KYP7 ((Rop guanine nucleotide exchange factor 1 {ECO:0000313|EMBL:OIT34362.1}))
HSP 1 Score: 876.315 bits (2263), Expect = 0.000e+0
Identity = 442/580 (76.21%), Postives = 494/580 (85.17%), Query Frame = 0
Match: A0A314KYP7 ((Rop guanine nucleotide exchange factor 1 {ECO:0000313|EMBL:OIT34362.1}))
HSP 1 Score: 876.315 bits (2263), Expect = 0.000e+0
Identity = 442/580 (76.21%), Postives = 494/580 (85.17%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPLA R F + FPAP+ MFPV+GG+DVV+ DK+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGV TALAISNAITNLSAT+FGELWRLEPLAAQKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLY+NLPALKKLDAMLI++LDGFHD EFWYV+RG+ G+DCD+Y S GRPSVRQEEKWWLPCPKVPP GL+E+ARK+LQQCRDCTNQILKAALAINSNVLAEM+ PSAY++TLPK+GKACLGD +YRYITAD+ SPECLLDCLDLSSEH LEVANRIEAAVHVW LK Q+KH + KSK SW GKVKGLV D KN LA+RAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S FN+G LG P+QKRM PSPFSI+H+PY SPFATPTFC S P+ SP + +P G K P K + +P DL+KLWSYAG LSARR S DAPERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLACRRFAAKSEFPAPMIPPFMFPVIGGKDVVLCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATIFGELWRLEPLAAQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYLNLPALKKLDAMLISILDGFHDTEFWYVDRGIVLGDGEDCDSYTSGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRLQQCRDCTNQILKAALAINSNVLAEMETPSAYVETLPKSGKACLGDIIYRYITADKFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWTLKDQKKHPHKRKSKRKSWGGKVKGLVGDGDKNQYLAERAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDATKRCAAAESISLFNRGGLGGLPVQKRMSPSPFSIQHSPYASPFATPTFCLS-PLIGSPGKAVSP-SKAGSKVPPTDKLDKAMPTDLDKLWSYAGKLSARRPSKDAPERD 577
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IR95 ((Putative rop guanine nucleotide exchange factor 1-like {ECO:0000313|EMBL:JAP34553.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 440/580 (75.86%), Postives = 494/580 (85.17%), Query Frame = 0
Match: A0A0V0IR95 ((Putative rop guanine nucleotide exchange factor 1-like {ECO:0000313|EMBL:JAP34553.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 440/580 (75.86%), Postives = 494/580 (85.17%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPLA R FT + FP P+ MFP +GG+DVV DK+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSAT+FGELWRLEPLA QKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLY+NLPALKKLDAMLI++LDGFHD EFWYV+RG+ GDDCD+YP GRPSVRQEEKWWLPCPKVPP GL+E+ARK++QQCRDCTNQILKAALAINSNVLAEM+ PSAY++TLPK+GK CLGD +YRYITAD SPECLLDCLDLSSEH LEVANRIEAAVHVW+LK Q+KH + KSK SW GKVKGLV D GKN LA+RAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRC+ AE +S FN+G LG P+QKRM PSPFSI+H+P+TSPFATPTFC S P+ SP ++ +P G K +P K E P DL+KLWSYAGNLSARR S D PERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLACRRFTAKSEFPTPMLPPFMFPGIGGKDVVPCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATIFGELWRLEPLALQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYLNLPALKKLDAMLISILDGFHDTEFWYVDRGIVLAEGDDCDSYPPGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRVQQCRDCTNQILKAALAINSNVLAEMETPSAYIETLPKSGKTCLGDIIYRYITADNFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWRLKDQKKHPHKRKSKGKSWGGKVKGLVADGGKNQYLAERAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAENISLFNRGGLGGLPVQKRMSPSPFSIQHSPFTSPFATPTFCLS-PLIGSPGKIASP-SKAGSKVLPTAKLEKVTPTDLDKLWSYAGNLSARRPSKDVPERD 577
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JAR0 ((Plant specific Rop nucleotide exchanger, PRONE {ECO:0000313|EMBL:OMO91933.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 438/576 (76.04%), Postives = 493/576 (85.59%), Query Frame = 0
Match: A0A1R3JAR0 ((Plant specific Rop nucleotide exchanger, PRONE {ECO:0000313|EMBL:OMO91933.1}))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 438/576 (76.04%), Postives = 493/576 (85.59%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCRFNAEAASSSMASSPLARRAFTGNAGFPAPVMFPVVGGQDVVVWED-KTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPL-PDLEKLWSYAGNLSARRISGDAPERD 571
M ++SS++CSDQQS+ R GSYSLSADVSESES SSFS RF+ E SSSM SSP R G GF PVM PV+GG+DVV+W+D K EK + +LSEVEMMKERFAKLLLGEDMSGGGKGV TALAISNAITNLSATVFGELWRLEPLA Q+KAMW REME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLYVNLPALKKLDAMLI++LDGF + EFWYV+RG+ G DCD YPS+ S GRPS+RQEEKWWLPCPKVP NGL+EDARKKLQQCRDCTNQILKAA+AINS+VLAEM+IP+AYL+TLPKNGKACLGD +YRYITAD+ SPECLLDCLDLS+EH LE+ANRIEAAVHVWK K Q+KH N+IK K SSW GKVKGLV D+ KN+ LAQRAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S F++ L PIQKRM PSPFSI+HTPY SPFATPTFCSS P+T SP RV + ++ N +K P+ K E P + E++WSY G+LSARRIS +APERD
Sbjct: 1 MGSVSSDDCSDQQSE-RCGSYSLSADVSESESCSSFSCRRFDGEGCSSSMTSSP--RLPAAGGFGFQVPVMLPVIGGKDVVIWDDEKPEKRDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQRKAMWRREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYVNLPALKKLDAMLISMLDGFRETEFWYVDRGIVLGDGGDCDAYPSSVSGGRPSIRQEEKWWLPCPKVPANGLSEDARKKLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKNGKACLGDIIYRYITADRFSPECLLDCLDLSTEHHTLEIANRIEAAVHVWKQKDQKKHVNHIKVKRSSWGGKVKGLVADSEKNNFLAQRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCAAAETISLFSRSGLSGLPIQKRMSPSPFSIQHTPYASPFATPTFCSSTPLTGSPGRVPSSLKRNVLKEEPDWKFEKPFAAEFERVWSYTGSLSARRISENAPERD 573
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7EW99 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 440/580 (75.86%), Postives = 494/580 (85.17%), Query Frame = 0
Match: A0A3Q7EW99 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 440/580 (75.86%), Postives = 494/580 (85.17%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPL R FT + FP PV MFP +GG+DVV+ DK+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSAT+FGELWRLEPLA QKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLY+NLPALKKLDAMLI++LDGF D EFWYV+RG+ GDDCD++P GRPSVRQEEKWWLPCPKVPP GL+E+ARK++QQCRDCTNQILKAALAINSNVLAE++ PSAY++TLPK+GKACLGD +YRYITAD SPECLLDCLDLSSEH LEVANRIEAAVHVW+LK Q+KH + KSK SW GKVKGLV D GKN LA+RAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRC+ AE SFFN+G LG P+QKRM PSPFSI+H+P+TSPFATPTFC S P+ SP + +P G K +P K E P DL+KLWSYAGNLSARR S DAPERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLPCRRFTAKSEFPTPVLPPFMFPAIGGKDVVLCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATIFGELWRLEPLALQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYLNLPALKKLDAMLISILDGFRDTEFWYVDRGIVLAEGDDCDSFPPGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRVQQCRDCTNQILKAALAINSNVLAEVETPSAYIETLPKSGKACLGDIIYRYITADNFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWRLKDQKKHPHKRKSKGKSWGGKVKGLVADGGKNQYLAERAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAENTSFFNRGGLGGLPVQKRMSPSPFSIQHSPFTSPFATPTFCLS-PLIGSPGKTASP-SKAGSKVLPTAKLEKVSPTDLDKLWSYAGNLSARRPSKDAPERD 577
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Y0X2 ((rop guanine nucleotide exchange factor 1-like {ECO:0000313|RefSeq:XP_016445632.1}))
HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 441/580 (76.03%), Postives = 494/580 (85.17%), Query Frame = 0
Match: A0A1S3Y0X2 ((rop guanine nucleotide exchange factor 1-like {ECO:0000313|RefSeq:XP_016445632.1}))
HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 441/580 (76.03%), Postives = 494/580 (85.17%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPLA R F + FPAP+ MFPV+GG+DVV+ DK+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGV TALAISNAITNLSAT+FGELWRLEPLAAQKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLY+NLPALKKLDAMLI++LDGF D EFW+V+RG+ G+DCD+Y S GRPSVRQEEKWWLPCPKVPP GL+E+ARK+LQQCRDCTNQILKAALAINSNVLAEM+ PSAY++TLPK+GKACLGD +YRYITAD+ SPECLLDCLDLSSEH LEVANRIEAAVHVW LK Q+KH + KSK SW GKVKGLV D KN LA+RAE+LLH L++R+PGLPQT+LDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S FN+G LG P+QKRM PSPFSI+H+PY SPFATPTFC S P+ SP + +P G K P K E +P DL+KLWSYAGNLSARR S DAPERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLACRRFAAKSEFPAPMIPPFMFPVIGGKDVVLCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATIFGELWRLEPLAAQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYLNLPALKKLDAMLISILDGFRDTEFWHVDRGIVLGDGEDCDSYTSGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRLQQCRDCTNQILKAALAINSNVLAEMETPSAYVETLPKSGKACLGDIIYRYITADKFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWTLKDQKKHPHKRKSKRKSWGGKVKGLVGDGDKNQYLAERAETLLHSLRLRFPGLPQTSLDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDATKRCAAAESISLFNRGGLGGLPVQKRMSPSPFSIQHSPYASPFATPTFCLS-PLIGSPGKAVSP-SKAGSKVPPMDKLEKAMPTDLDKLWSYAGNLSARRPSKDAPERD 577
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XSD5 ((rop guanine nucleotide exchange factor 1 isoform X1 {ECO:0000313|RefSeq:XP_009794967.1}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 441/580 (76.03%), Postives = 493/580 (85.00%), Query Frame = 0
Match: A0A1U7XSD5 ((rop guanine nucleotide exchange factor 1 isoform X1 {ECO:0000313|RefSeq:XP_009794967.1}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 441/580 (76.03%), Postives = 493/580 (85.00%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPLA R F + FPAP+ MFPV+GG+DVV+ DK+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGV TALAISNAITNLSAT+FGELWRLEPLAAQKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLY+NLPALKKLDAMLI++LDGF D EFWYV+RG+ G+DCD+Y S GRPSVRQEEKWWLPCPKVPP GL+E+ARK+LQQCRDCTNQILKAALAINSNVLAEM+ PSAY++TLPK+GKACLGD +YRYITAD+ SPECLLDCLDLSSEH LEVANRIEAAVHVW LK Q+KH + KSK SW GKVKGLV D KN LA+RAE+LLH L++R+PGLPQT+LDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S FN+G LG P+QKRM PSPFSI+H+PY SPFATPTFC S P+ SP + +P G K P K E +P DL+KLWSYAGNLSARR DAPERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLACRRFAAKSEFPAPMIPPFMFPVIGGKDVVLCNDKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATIFGELWRLEPLAAQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYLNLPALKKLDAMLISILDGFRDTEFWYVDRGIVLGDGEDCDSYTSGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRLQQCRDCTNQILKAALAINSNVLAEMETPSAYVETLPKSGKACLGDIIYRYITADKFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWTLKDQKKHPHKRKSKRKSWGGKVKGLVGDGDKNQYLAERAETLLHSLRLRFPGLPQTSLDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDATKRCAAAESISLFNRGGLGGLPVQKRMSPSPFSIQHSPYASPFATPTFCLS-PLIGSPGKAVSP-SKAGSKVPPMDKLEKAMPTDLDKLWSYAGNLSARR-PKDAPERD 576
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BLR7 ((Rop guanine nucleotide exchange factor {ECO:0000313|EnsemblPlants:PGSC0003DMT400047997}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 438/580 (75.52%), Postives = 492/580 (84.83%), Query Frame = 0
Match: M1BLR7 ((Rop guanine nucleotide exchange factor {ECO:0000313|EnsemblPlants:PGSC0003DMT400047997}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 438/580 (75.52%), Postives = 492/580 (84.83%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCR-FNAEAASSSMASSPLARRAFTGNAGFPAPV----MFPVVGGQDVVVWEDKTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPLP-DLEKLWSYAGNLSARRISGDAPERD 571
M ++SSEE SDQQS+ R GSYSLSADVSESESSSS CR ++AE ASSSMASSPLA R FT + FP P+ MFP +GG+DVV +K+EK +A+LSE+++MKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSAT+FGELWRLEPLA QKKAMWCREME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLY+NLPALKKLDAMLI++LDGF D EFWYV+RG+ GDDCD+YP GRPSVRQEEKWWLPCPKVPP GL+E+ARK++QQCRDCTNQILKAALAINSNVLAEM+ PSAY++TLPK+GK CLGD +YRYITAD SPECLLDCLDLSSEH LEVANRIEAAVHVW+LK Q+KH + KSK SW GKVKGLV D GKN LA+RAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRC+ AE +S FN+G L P+QKRM PSPFSI+H+P+TSPFATPTFC S P+ SP + +P G K +P K E P DL+KLWSYAGNLSARR S DAPERD
Sbjct: 1 MGSVSSEEGSDQQSE-RCGSYSLSADVSESESSSSSFSCRRYDAEGASSSMASSPLACRRFTAKSEFPTPMLPPFMFPGIGGKDVVPCNEKSEKRQADLSEIDLMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATIFGELWRLEPLALQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYLNLPALKKLDAMLISILDGFRDTEFWYVDRGIVLAEGDDCDSYPPGIGFGRPSVRQEEKWWLPCPKVPPKGLSEEARKRVQQCRDCTNQILKAALAINSNVLAEMETPSAYIETLPKSGKTCLGDIIYRYITADNFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWRLKDQKKHPHKRKSKGKSWGGKVKGLVADGGKNQYLAERAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAENISLFNRGGLDGLPVQKRMSPSPFSIQHSPFTSPFATPTFCLS-PLIGSPGKTASP-SKAGSKVLPTAKLEKVTPTDLDKLWSYAGNLSARRPSKDAPERD 577
BLAST of DCAR_003197 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061E5J3 ((Rho guanyl-nucleotide exchange factor 1 {ECO:0000313|EMBL:EOX97543.1}))
HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 434/576 (75.35%), Postives = 488/576 (84.72%), Query Frame = 0
Match: A0A061E5J3 ((Rho guanyl-nucleotide exchange factor 1 {ECO:0000313|EMBL:EOX97543.1}))
HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 434/576 (75.35%), Postives = 488/576 (84.72%), Query Frame = 0
Query: 1 MPTISSEECSDQQSDDRGGSYSLSADVSESESSSSFSGCRFNAEAASSSMASSPLARRAFTGNAGFPAPVMFPVVGGQDVVVWED-KTEKPEANLSEVEMMKERFAKLLLGEDMSGGGKGVSTALAISNAITNLSATVFGELWRLEPLAAQKKAMWCREMECLLCVSDSIVELVPSIQQFPGGGTYEVMATQPRSDLYVNLPALKKLDAMLITVLDGFHDLEFWYVERGVA---GDDCDTYPSAFSSGRPSVRQEEKWWLPCPKVPPNGLTEDARKKLQQCRDCTNQILKAALAINSNVLAEMDIPSAYLDTLPKNGKACLGDTVYRYITADQLSPECLLDCLDLSSEHQALEVANRIEAAVHVWKLKYQRKHSNYIKSKHSSWSGKVKGLVNDAGKNHVLAQRAESLLHILKMRYPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAAKRCSTAELMSFFNQGSLGSKPIQKRMLPSPFSIRHTPYTSPFATPTFCSSPPITSSPSRVHAPIQNNGIKGMPNRKAEIPL-PDLEKLWSYAGNLSARRISGDAPERD 571
M ++SS++ SDQQS R GSYSLSADVSESES SSFS RF+ E SSSM SSP R G GF PVM PV+GG+DVV+W+D K EK + NLSEVE+MKERFAKLLLGEDMSGGGKGV TALAISNAITNLSATVFGELWRLEPLA QKKAMW REME LLCVSDSIVELVPSIQQFPGGGTYEVMAT+PRSDLY+NLPALKKLDAMLI++LDGF + EFWYV+RG+ G DCD YPS+ S GRPS+RQEEKWWLPCPKVPPNGL+EDARKKLQQCRDCTNQILKAA+AINS+VLAEM+IP+AYL+TLPKNGKACLGD +YRY+TADQ SPECLLDCLDLS+EH LE+ANRIEAAVHVWK K RKH + K + SSW GKVKGLV D KN+ LAQRAE+LLH L++R+PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDA KRC+ AE +S F++ SL PIQKRM PSPFSI+H+PY SPFATPTFCSS P+T SP R + ++ NG+K P+ K E + E++WSY G+LSARRIS +APERD
Sbjct: 1 MGSVSSDDGSDQQSV-RCGSYSLSADVSESESCSSFSCRRFDGEGCSSSMTSSP--RLLAAGGFGFQVPVMLPVIGGKDVVIWDDEKPEKRDNNLSEVELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYINLPALKKLDAMLISMLDGFLETEFWYVDRGIVVGDGGDCDAYPSSVSGGRPSIRQEEKWWLPCPKVPPNGLSEDARKKLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKNGKACLGDIIYRYVTADQFSPECLLDCLDLSTEHHTLEIANRIEAAVHVWKQKDHRKHMTHGKVRRSSWGGKVKGLVADNEKNNFLAQRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCAAAETISLFSRSSLSGLPIQKRMSPSPFSIQHSPYASPFATPTFCSSTPLTGSPGRAASSLKRNGLKEEPDWKLEKAYGAEFERVWSYTGSLSARRISENAPERD 573
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AY82 | E-Value: 0.000e+0, PID: 75.82 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A1R3IBL9 | E-Value: 0.000e+0, PID: 75.87 | (Plant specific Rop nucleotide exchanger, PRONE {E... [more] |
| A0A314KYP7 | E-Value: 0.000e+0, PID: 76.21 | (Rop guanine nucleotide exchange factor 1 {ECO:000... [more] |
| A0A0V0IR95 | E-Value: 0.000e+0, PID: 75.86 | (Putative rop guanine nucleotide exchange factor 1... [more] |
| A0A1R3JAR0 | E-Value: 0.000e+0, PID: 76.04 | (Plant specific Rop nucleotide exchanger, PRONE {E... [more] |
| A0A3Q7EW99 | E-Value: 0.000e+0, PID: 75.86 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A1S3Y0X2 | E-Value: 0.000e+0, PID: 76.03 | (rop guanine nucleotide exchange factor 1-like {EC... [more] |
| A0A1U7XSD5 | E-Value: 0.000e+0, PID: 76.03 | (rop guanine nucleotide exchange factor 1 isoform ... [more] |
| M1BLR7 | E-Value: 0.000e+0, PID: 75.52 | (Rop guanine nucleotide exchange factor {ECO:00003... [more] |
| A0A061E5J3 | E-Value: 0.000e+0, PID: 75.35 | (Rho guanyl-nucleotide exchange factor 1 {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |