Resource Type:
Polypeptide
Name:
DCAR_001932
Identifier:
DCAR_001932.mRNA-protein
Sequence:
MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEA
CNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCA
LKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEF
DLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSH
RKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRC
RDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQ
PKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTS
DYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLG
LKSYRCCPRPNFCSLLQAILQKIVDRGRFVNYIFGTKGTNAILSIEYYCC
DRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVG
VLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARS
KHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAI
ALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMV
FLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAE
ALKSSLAELSQEKPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNDNAT
MN*
Sequence Length:
753
Sequence Checksum:
96548cb0ad160bf5471c3d2e55f0f126
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_001932, derives from mRNA, DCAR_001932. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CEM5 (Origin recognition complex subunit 4 {ECO:0000256|ARBA:ARBA00019083} (Fragment))
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 324/426 (76.06%), Postives = 379/426 (88.97%), Query Frame = 0
Match: A0A5B7CEM5 (Origin recognition complex subunit 4 {ECO:0000256|ARBA:ARBA00019083} (Fragment))
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 324/426 (76.06%), Postives = 379/426 (88.97%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDR 426
MG NPA++ALIL R+RL +PNFIF FS+SPD+NYSKLKFII++SV EACNNSVLLLGPRGCGK+AVLELV+ DLLKEYPDMI+ IKLNGLLHSDD CALKEIARQLC EHQL FSK+ASFDDN+QFM+ +LRECGLAHKTVIFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVVVG+SCRLDADQLLEKRVRSRFSHR+LLFLPPSKE+LQ L++H+LLLPTDS++P DY EFNA+LL + + R ++IIDTLS SDSTFN+L+RFLF AVC+MD++ GFL+LENFKAAL+ +QRQPKLECLKDCS+LELY+LVCM RLE++EQ+SYNFN++MKEY SIHD+FQTSDY+A NVCLRAFEHLLQREL+S VD+RGH QS+E+ PVKLLI + EL+ GLKS+ CP AILQK++DR
Sbjct: 15 MGRKNPAKEALILLRSRLCNPNFIFTSFSNSPDSNYSKLKFIISTSVIEACNNSVLLLGPRGCGKIAVLELVMADLLKEYPDMISVIKLNGLLHSDDNCALKEIARQLCVEHQLLFSKMASFDDNSQFMVAMLRECGLAHKTVIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVVGVSCRLDADQLLEKRVRSRFSHRELLFLPPSKEELQRLLEHILLLPTDSSLPHDYVVEFNAKLLNIFAEERFKEIIDTLSNSDSTFNYLLRFLFSAVCYMDLESGFLSLENFKAALSSIQRQPKLECLKDCSILELYILVCMKRLEVKEQDSYNFNSVMKEYKSIHDSFQTSDYYAWNVCLRAFEHLLQRELVSFVDNRGHNQSIEFRPVKLLIFSQELYQGLKSHHSCP---------AILQKLIDR 431
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GJF6 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 328/442 (74.21%), Postives = 376/442 (85.07%), Query Frame = 0
Match: A0A7J7GJF6 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 328/442 (74.21%), Postives = 376/442 (85.07%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYS-------------KLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLR---AFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDR 426
MG + AE+ALIL R+RL +PNFIF S SPD+NY KLKFI++SSVTEACNNSVLLLGPRGCGK+AVLELV++DLLKEYPDMI IKLNGLLHSDD CALKEIARQLC EHQL FSK+ASFDDN QFMI +LRECGL HKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSV+SQA+V+G+SCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQ L+KH+L+LPTDS++P DY EFNA+LL +L + R + +ID LS SDST+NHL+RFLF AV HMD+ LGFL+LENFKAAL+ +QRQPK+ECLKDCSVLELY+LVCM RLE++EQESYNFN++MKEY SIHD+FQTSDY+ARNVCLR AFEHLL+RELIS +D+RGH QSVE+ PVKLLIS HEL+ GLKSYR CP AILQK+++R
Sbjct: 1 MGREKRAEEALILLRSRLCNPNFIFTSLSDSPDSNYRSKPLSACLNPFACKLKFIVSSSVTEACNNSVLLLGPRGCGKIAVLELVIEDLLKEYPDMILVIKLNGLLHSDDNCALKEIARQLCVEHQLLFSKMASFDDNTQFMIAMLRECGLVHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAIVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQRLLKHILVLPTDSSLPHDYVVEFNAKLLNVLAEERFKQLIDALSNSDSTYNHLLRFLFSAVSHMDLDLGFLSLENFKAALSSIQRQPKVECLKDCSVLELYILVCMRRLEVKEQESYNFNSVMKEYKSIHDSFQTSDYYARNVCLRVRMAFEHLLERELISFIDNRGHNQSVEFRPVKLLISYHELYQGLKSYRSCP---------AILQKLINR 433
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGW6 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 325/428 (75.93%), Postives = 372/428 (86.92%), Query Frame = 0
Match: A0A2R6PGW6 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 325/428 (75.93%), Postives = 372/428 (86.92%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDRGR 428
MG +N A +ALIL R+RL +P F+F+ FS S D+NYSKLKFI++SSVTEACNNSVLLLGPRGCGK AVLELV++DLLKEYPDMI+ IKLNGLLHSDD CA+KEIARQLC EHQL FSK+ SFDDN QFMI +LRECGLAHKTV+FVLDEFDLFAQGKQRLLY LLDAMQSV+SQAVV+G+SCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQ LIKH+L+LPTDS++P DY EFNA+LL +L R + IIDTLS SDST ++L+RFLF AVCHMD+K GFL +ENFKAAL+ +QRQPKLE LKDCS+LELY+LVCM RLE+REQ+SYNFN++MKEY SIHD+FQTSDY+ARNVCLRAFEHLL+RELIS +D RGH QS E+ P KLLIS HEL+ GLKSYR CP AILQK++DR R
Sbjct: 1 MGRENLAGEALILLRSRLCNPKFVFSPFSDSADSNYSKLKFILSSSVTEACNNSVLLLGPRGCGKNAVLELVIEDLLKEYPDMISVIKLNGLLHSDDNCAVKEIARQLCVEHQLLFSKMVSFDDNTQFMIGMLRECGLAHKTVMFVLDEFDLFAQGKQRLLYCLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQRLIKHILVLPTDSSLPHDYVVEFNAKLLNILAKERFKQIIDTLSNSDSTCSNLLRFLFSAVCHMDLKSGFLLIENFKAALSSIQRQPKLEGLKDCSILELYMLVCMWRLEVREQDSYNFNSVMKEYRSIHDSFQTSDYYARNVCLRAFEHLLERELISFMDHRGHNQSTEFRPAKLLISYHELYQGLKSYRSCP---------AILQKLIDRER 419
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YL94 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 311/427 (72.83%), Postives = 366/427 (85.71%), Query Frame = 0
Match: A0A1S3YL94 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 311/427 (72.83%), Postives = 366/427 (85.71%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDRG 427
MG +NPAE+A +L R RL +PNFIF FS SP +NYSKLK+I++SSVTEACNNSVLLLGPRGCGK+ +LELV+ DLL+EYPDMI +KLNGLLHSDD CALKEIARQLC EH L FSK+ASFDDN+QF++ +LRECGLAHKTVIFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVV+G+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ +++H LLLPT+S +P Y +N +LL L D + +DII +L DST NHL+RFLF AVCHMD K GFL+LENFK AL+ +QRQPKLE LKDCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQTSDY+ARNVCLRAFEHLLQR+LISLVD+RGH QSVE+ PV+LLIS++ELH GLKSYR CP AIL K++DRG
Sbjct: 1 MGVENPAEQAQVLLRTRLYNPNFIFTIFSDSPGSNYSKLKYIMSSSVTEACNNSVLLLGPRGCGKVPILELVIKDLLQEYPDMICVVKLNGLLHSDDNCALKEIARQLCMEHHLMFSKMASFDDNSQFVLSMLRECGLAHKTVIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSQEDLQKILQHALLLPTESELPSQYVATYNTKLLNTLSDDKFKDIITSLCECDSTLNHLLRFLFAAVCHMDTKPGFLSLENFKTALSSIQRQPKLEALKDCSILELYILVCLRRLEVKEQETTNFNSLMKEYKSVHDSFQTSDYYARNVCLRAFEHLLQRQLISLVDNRGHGQSVEFRPVRLLISSYELHQGLKSYRSCP---------AILHKLIDRG 418
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z9K3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 310/427 (72.60%), Postives = 368/427 (86.18%), Query Frame = 0
Match: A0A1S3Z9K3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 310/427 (72.60%), Postives = 368/427 (86.18%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDRG 427
MG +NPAE+A +L R R+ +PNFIF FS SPD+NYSKLK+I++SSVTEACNNSVLLLGPRGCGK+ +LELV+ DLL+EYPD I IKLNGLLHSDD CALKEIARQLC EH L FSK+ASFDDN+QF++ +LRECGLAHKT+IFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVV+G+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ ++++ LLLPT+S +P Y T +N +LL L D + +DII +L SDST NHL+RFLF AVCHMD K GFL+L+NFK AL+ +QRQPKLE LKDCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQTSDY+ARNVCLRAFEHLLQR+LISLVD+RGH QSVE+ PV+LLIS++ELH GLKSYR CP AIL K++DRG
Sbjct: 1 MGVENPAEQAQVLLRTRICNPNFIFTLFSDSPDSNYSKLKYIMSSSVTEACNNSVLLLGPRGCGKVPILELVIKDLLQEYPDTICVIKLNGLLHSDDNCALKEIARQLCMEHHLMFSKMASFDDNSQFVLSMLRECGLAHKTIIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSQEDLQKILQYALLLPTESELPPQYVTAYNTKLLNTLSDDKFKDIITSLCDSDSTLNHLLRFLFAAVCHMDAKSGFLSLDNFKTALSSIQRQPKLEALKDCSILELYILVCLRRLEVKEQETTNFNSVMKEYKSVHDSFQTSDYYARNVCLRAFEHLLQRQLISLVDNRGHGQSVEFRPVRLLISSYELHQGLKSYRSCP---------AILHKLIDRG 418
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KQE3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 309/427 (72.37%), Postives = 367/427 (85.95%), Query Frame = 0
Match: A0A1J6KQE3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 309/427 (72.37%), Postives = 367/427 (85.95%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVDRG 427
MG +N AE+A +L R RL +PNFIF FS SPD+NYSKLK+I++SSVTEACNNSVLLLGPRGCGK+ +LELV++DLL+EYPDMI IKLNGLLHSDD CALKEIARQLC EH L FSK+ASFDDN+QF++ +LRECGLAHKT+IFVLDEFDLF QGKQRLLYSLLDAMQS++SQAVV+G+SCRLDADQLLEKRVRSRFSHRKLLFLPP +EDLQ +++H LLLPT+S +P Y +N +LL L D + +DII +L SDST NHL+RFLF AVCHMD K GFL+L+NFK AL+ +QRQPKLE LKDCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQTSDY+ARNVCLRAFEHLLQR+LISLVD+RGH QSVE+ PV+LLIS++ELH GLKSYR CP AIL K++DRG
Sbjct: 1 MGVENTAEQAKVLLRTRLCNPNFIFTIFSDSPDSNYSKLKYIMSSSVTEACNNSVLLLGPRGCGKVPILELVINDLLQEYPDMICVIKLNGLLHSDDNCALKEIARQLCMEHHLMFSKMASFDDNSQFVLSMLRECGLAHKTIIFVLDEFDLFTQGKQRLLYSLLDAMQSITSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPLQEDLQKILQHALLLPTESELPPQYVAAYNTKLLNTLSDDKFKDIITSLCDSDSTLNHLLRFLFAAVCHMDTKSGFLSLDNFKTALSSIQRQPKLEALKDCSILELYILVCLRRLEVKEQETTNFNSVMKEYKSVHDSFQTSDYYARNVCLRAFEHLLQRQLISLVDNRGHGQSVEFRPVRLLISSYELHQGLKSYRSCP---------AILHKLIDRG 418
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VV01 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 304/408 (74.51%), Postives = 357/408 (87.50%), Query Frame = 0
Match: A0A1U7VV01 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 304/408 (74.51%), Postives = 357/408 (87.50%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCP 408
MG +NPAE+A +L R RL +PNFIF FS SP +NYSKLK+I++SSVTEACNNSVLLLGPRGCGK+ +LELV+ DLL+EYPDMI +KLNGLLHSDD CALKEIARQLC EH L FSK+ASFDDN+QF++ +LRECGLAHKTVIFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVV+G+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ +++H LLLPT+S +P Y +N +LL L D + +DII +L DST NHL+RFLF AVCHMD K GFL+LENFK AL+ +QRQPKLE LKDCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQTSDY+ARNVCLRAFEHLLQR+LISLVD+RGH QSVE+ PV+LLIS++ELH GLKSYR CP
Sbjct: 1 MGVENPAEQAQVLLRTRLYNPNFIFTIFSDSPGSNYSKLKYIMSSSVTEACNNSVLLLGPRGCGKVPILELVIKDLLQEYPDMICVVKLNGLLHSDDNCALKEIARQLCMEHHLMFSKMASFDDNSQFVLSMLRECGLAHKTVIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSQEDLQKILQHALLLPTESELPSQYVATYNTKLLNTLSDDKFKDIITSLCECDSTLNHLLRFLFAAVCHMDTKPGFLSLENFKTALSSIQRQPKLEALKDCSILELYILVCLRRLEVKEQETTNFNSLMKEYKSVHDSFQTSDYYARNVCLRAFEHLLQRQLISLVDNRGHGQSVEFRPVRLLISSYELHQGLKSYRSCP 408
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CZZ9 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0
Identity = 304/425 (71.53%), Postives = 367/425 (86.35%), Query Frame = 0
Match: M1CZZ9 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0
Identity = 304/425 (71.53%), Postives = 367/425 (86.35%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIVD 425
MG +NPAE+A IL R RL +PNFIF FS SPD+NYSKLK+I++SSVTEACNNS LLLGPRGCGK+A+LE+V+ DLL+EYPD I IKLNGLLHS+D CALKEIARQLC E+QL FSK+ASFDDN+QF+I +LRECGLAHKT+IFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVVVG+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ +++H LLLPT+S++P Y +N +LL L D + +DIID+L D+TFNHL+RFLF +VCHMD K GFL+L+NFK AL+ +QRQPKLE L+DCS+LELY+LVC+ RLE +EQE+ NFN++MKEY +H++FQT+DY+ARNVCLRAFEHLLQR+LISLVD+RGH+QSVE+ PV+LLIS+HELH GL++YR CP AIL K++D
Sbjct: 1 MGVENPAEQAQILLRTRLCNPNFIFTIFSDSPDSNYSKLKYIMSSSVTEACNNSALLLGPRGCGKVAILEMVIKDLLQEYPDTICVIKLNGLLHSEDNCALKEIARQLCIENQLVFSKMASFDDNSQFVIAMLRECGLAHKTIIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVVGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSREDLQKILQHALLLPTESSLPPQYVAAYNKKLLNTLSDDKFKDIIDSLCNFDATFNHLLRFLFTSVCHMDTKAGFLSLDNFKTALSSIQRQPKLEALQDCSILELYILVCLRRLEGKEQETTNFNSVMKEYKDVHNSFQTTDYYARNVCLRAFEHLLQRQLISLVDNRGHSQSVEFRPVRLLISSHELHQGLRAYRSCP---------AILHKLLD 416
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2YC07 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 303/424 (71.46%), Postives = 367/424 (86.56%), Query Frame = 0
Match: A0A2G2YC07 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 303/424 (71.46%), Postives = 367/424 (86.56%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIV 424
MG +NPAE+A IL R RL +PN+IF S SPD+NYSKLK+I++SSVTEACNNS LLLGPRGCGK+A+LE+V+ DLL+EYPDMI IKLNGLLHS+D CALKEIARQLC E+QL FSK+ASFDDN+QF+I +LRECGLAHKT+IFV+DEFDLF QGKQRLLYSLLDAMQSV+SQAVVVG+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ +++H LLLPT+S++P Y +N + L +L D + +DI+++L SDSTFNHL+RFLF+AVC MD K GFL+L+NFK AL+ +QRQPKLE L+DCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQT+DY+ RNVCLRAFEHL QRELISLVD+RGH+QSVE+ PV+LLIS+HELH GLKSYR CP AIL K++
Sbjct: 1 MGVENPAEEAQILLRTRLCNPNYIFTILSDSPDSNYSKLKYIMSSSVTEACNNSALLLGPRGCGKVAILEMVIKDLLQEYPDMICVIKLNGLLHSEDNCALKEIARQLCIENQLVFSKMASFDDNSQFVISMLRECGLAHKTIIFVVDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVVGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSQEDLQRILQHCLLLPTESSLPPQYVAAYNKKFLNMLSDDKFKDIVESLCDSDSTFNHLLRFLFVAVCEMDPKSGFLSLDNFKTALSSIQRQPKLEALQDCSILELYILVCLRRLEVKEQETTNFNSVMKEYKSVHDSFQTADYYERNVCLRAFEHLFQRELISLVDNRGHSQSVEFRPVRLLISSHELHQGLKSYRSCP---------AILHKVL 415
BLAST of DCAR_001932 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2VJZ3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 304/424 (71.70%), Postives = 367/424 (86.56%), Query Frame = 0
Match: A0A2G2VJZ3 (Origin of replication complex subunit 4 {ECO:0000256|PIRNR:PIRNR007858})
HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 304/424 (71.70%), Postives = 367/424 (86.56%), Query Frame = 0
Query: 1 MGGDNPAEKALILHRARLSDPNFIFAHFSHSPDTNYSKLKFIIASSVTEACNNSVLLLGPRGCGKLAVLELVLDDLLKEYPDMITTIKLNGLLHSDDKCALKEIARQLCAEHQLSFSKLASFDDNNQFMIDILRECGLAHKTVIFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDLQGLIKHMLLLPTDSNIPEDYTTEFNARLLKLLEDGRCRDIIDTLSTSDSTFNHLIRFLFIAVCHMDMKLGFLTLENFKAALAGVQRQPKLECLKDCSVLELYVLVCMMRLELREQESYNFNTIMKEYSSIHDTFQTSDYFARNVCLRAFEHLLQRELISLVDSRGHTQSVEYHPVKLLISAHELHLGLKSYRCCPRPNFCSLLQAILQKIV 424
MG +NPAE+A IL R RL +PN+IF S SPD+NYSKLK+I++SSVTEACNNS LLLG RGCGK+A+LE+V+ DLL+EYPDMI IKLNGLLHS+D CALKEIARQLC E+QL FSK+ASFDDN+QF+I +LRECGLAHKT+IFVLDEFDLF QGKQRLLYSLLDAMQSV+SQAVVVG+SCRLDADQLLEKRVRSRFSHRKLLFLPPS+EDLQ +++H LLLPT+S++P Y +N +LL L D + +DI+++L SDSTFNHL+RFLF+AVC MD K GFL+L+NFK AL+ +QRQPKLE L+DCS+LELY+LVC+ RLE++EQE+ NFN++MKEY S+HD+FQT+DY+ RNVCLRAF+HLLQRELISLVD+RGH+QSVE+ PV+LLIS+HELH GLKSYR CP AIL K++
Sbjct: 1 MGVENPAEEAQILLRTRLCNPNYIFTILSDSPDSNYSKLKYIMSSSVTEACNNSALLLGSRGCGKVAILEMVIKDLLQEYPDMICVIKLNGLLHSEDNCALKEIARQLCIENQLVFSKMASFDDNSQFVISMLRECGLAHKTIIFVLDEFDLFTQGKQRLLYSLLDAMQSVTSQAVVVGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSQEDLQRILQHCLLLPTESSLPPQYVASYNKKLLNTLSDDKFKDIVESLCDSDSTFNHLLRFLFVAVCEMDTKSGFLSLDNFKTALSSIQRQPKLEALQDCSILELYILVCLRRLEVKEQETTNFNSVMKEYKSVHDSFQTADYYERNVCLRAFKHLLQRELISLVDNRGHSQSVEFRPVRLLISSHELHQGLKSYRSCP---------AILHKVL 415
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CEM5 | E-Value: 0.000e+0, PID: 76.06 | Origin recognition complex subunit 4 {ECO:0000256|... [more] |
| A0A7J7GJF6 | E-Value: 0.000e+0, PID: 74.21 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A2R6PGW6 | E-Value: 0.000e+0, PID: 75.93 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A1S3YL94 | E-Value: 0.000e+0, PID: 72.83 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A1S3Z9K3 | E-Value: 0.000e+0, PID: 72.60 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A1J6KQE3 | E-Value: 0.000e+0, PID: 72.37 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A1U7VV01 | E-Value: 0.000e+0, PID: 74.51 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| M1CZZ9 | E-Value: 0.000e+0, PID: 71.53 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A2G2YC07 | E-Value: 0.000e+0, PID: 71.46 | Origin of replication complex subunit 4 {ECO:00002... [more] |
| A0A2G2VJZ3 | E-Value: 0.000e+0, PID: 71.70 | Origin of replication complex subunit 4 {ECO:00002... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |