MENSKPSAPESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLL
QANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSL
CQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANF
VHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDGSDYHRFGWLLFLALRA
HAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGV
DLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNI
STDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSV
LGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVV
IGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHE
VVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYY
RVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTML
FPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVW
EKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSP
VTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPV
KDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKI
VKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVIL
SCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKT
GKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQI
PGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYAC
VGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFDDVGVVSDSLVANSIY
LQNGSCASSSGTPLKSEQPDA*
| Relationships |
|---|
| The polypeptide, DCAR_004259, derives from mRNA, DCAR_004259. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7AHS7 ((Putative retinoblastoma-related protein isoform X2 {ECO:0000313|EMBL:MPA54653.1}))
HSP 1 Score: 1610.51 bits (4169), Expect = 0.000e+0
Identity = 799/1028 (77.72%), Postives = 892/1028 (86.77%), Query Frame = 0
Query: 1 MENSKPSAPESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGS-SRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
ME++KP +P + +EARF FCK+GLS+D+ T T+ MKLF+ESKHLL +S A+G+GTPEEAE YWF F+LYS+KRL +RN ++ SDE +LCQ+LR AKLN+VDFFKE+PQFIVKVGPIL NLYG DWEKRLEAKELQANFVH+S+LSK+YKR Y E+FL + N DKQSA + SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLV+ILAILIIHVP R R F ++DSS+FVKKG KGVDL+ASLCK YETSEDELRKTME+ N LIE ILKKKPCLASE + ENLDN+ TDGLIYF+GLMEE +LS++L LEKDY DAI + G+LDER+F++ +DS+LGS SLSGGA+NI+G KRK DS+ASPTKTITSPLSPFRSP+ S ++G ++GS S++ +TPVSTAMTTAKWLR VI PLPSKPSAELE FLS CD++VT +V+RRAHIILEAIFPSSG G+ TGSLQ TNLMDNIWAEQRRLEA+KLYYRVLQAMCTAEAQIL+A+NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEI RLGLLAEPMPSLDAIA+H+N+S G L PV SLQK E+S SGQNGDIRSPKRLCTE RSVLVERNSF+SPVKDR LA NNLKSKL PPALQSAF+SPTR NPGGGGETCAETAIS+ F+KIVKLAAVRIN M+ERLQL QQIRE+ Y LFQ IL QQT LFFNRHIDQ+IL C YGVAKISQLNLTFREIIYNYRKQPQCK QVFRSVFVDWS+ARR GKTG +HVDIITFYNE+FIPAVKPLLVELAP G +K+++ PEA N D GQ PGSPK+S FPSLPDMSPKKVSA HNVYVSPLRSSKMDAL SH++KSYYACVGESTHAYQSPSKDLT INN LNG +K RG LNFD DVG+VSDSLVANS+YLQNGSCASSSG PLKSEQPD+
Sbjct: 8 MEDAKPLSPPNNDRGSMEARFTDFCKNGLSLDDNTFTQTMKLFSESKHLLLTTLS-AIGSGTPEEAERYWFAFILYSVKRLIERNEDNVNQGSDENGFALCQILRVAKLNIVDFFKELPQFIVKVGPILSNLYGTDWEKRLEAKELQANFVHLSLLSKWYKRVYREIFLTSEVNVDKQSAVANATCYVSDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVAILAILIIHVPIRLRNFVINDSSQFVKKGSKGVDLLASLCKSYETSEDELRKTMERANNLIEEILKKKPCLASECRTENLDNVETDGLIYFEGLMEEPSLSSSLGILEKDYVDAIRNKGELDERVFINEDDSLLGSGSLSGGAMNINGAKRKIDSIASPTKTITSPLSPFRSPSASHVNG--ILGSNSKMAATPVSTAMTTAKWLRTVISPLPSKPSAELEQFLSSCDKDVTTDVIRRAHIILEAIFPSSGLGEHCVTGSLQCTNLMDNIWAEQRRLEALKLYYRVLQAMCTAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLGLLAEPMPSLDAIAMHMNISCGGLPPVPSLQKHETS---------SGQNGDIRSPKRLCTEYRSVLVERNSFSSPVKDRFLAFNNLKSKLPPPALQSAFASPTRPNPGGGGETCAETAISIFFSKIVKLAAVRINGMVERLQLSQQIRESAYRLFQQILSQQTTLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKHQVFRSVFVDWSSARRRGKTGPEHVDIITFYNEIFIPAVKPLLVELAPTGIAQKTNRGPEASNITD-GQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSAKSYYACVGESTHAYQSPSKDLTDINNRLNGTRKLRGTLNFDDVDVGLVSDSLVANSLYLQNGSCASSSGAPLKSEQPDS 1022
Match: A0A5B7AD25 ((Putative retinoblastoma-related protein isoform X2 {ECO:0000313|EMBL:MPA54650.1}))
HSP 1 Score: 1601.26 bits (4145), Expect = 0.000e+0
Identity = 792/1011 (78.34%), Postives = 881/1011 (87.14%), Query Frame = 0
Query: 17 IEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
+EARF FC +GLS+D+ T+T+A+KLF ESKHLL +S A+G+GTPEEAE YWF F+LYS+KRL +RN ++ SDE +LCQ+LR AKLN+VDFFKE+PQFIVKVGPIL NLYG DWEKRLEAKELQANFVH+S+LSK+YKR Y E+FL + N DKQSA + SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLV+ILAILIIHVP R R F ++DSS+FVKKG KGVDL+ASLCK YETSEDELRKTME+ N LIE ILKKKPCLASE + ENLDNI TDGLIYF+GLMEE +LS++L LEKDY DAI + GDLDER+F++ EDS+LGS SLSGGA+NI+G KRK DS+ASPTKTITSPLSP+RSP+ S +G + +S++ +TPVSTAMTTAKWLR VI PLPSKPSAELE FLS CD++VT +V+RRAHIILEAIFPSSG G+ TGSLQ TNLMDNIWAEQRRLEA+KLYYRVLQAMCTAEAQIL+A+NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEI RLGLLAEPMPSLDAIA+H+N+S G L V SLQK E+SP GQNGDIRSPKRLCTE RSVLVERNSFTSPVKDRLLA NNLKSKL PPALQSAF+SPTR NPGGGGETCAETAIS+ F+KIVKLAAVRIN M+ERLQL QQIRE+ Y LFQ IL QQT LFFNRHIDQ+IL C YGVAKISQLNLTFREIIYNYRKQPQCK QVFRSVFVDWS+ARR GKTG +HVDIITFYNE+FIPAVKPLLVELAP G +K++++PEA NN GQ PGSPK++ FPSLPDMSPKKVSA HNVYVSPLRSSKMDAL SH++KSYYACVGESTHAYQSPSKDLT INN LNG +K RG LNFD DVG+VSDSLVANS+YLQNGSCA SSG+PLKSEQPD+
Sbjct: 22 MEARFTDFCNNGLSLDDNTVTQAVKLFKESKHLLLTTMS-AIGSGTPEEAEWYWFAFILYSVKRLIERNEDNVNQGSDENGFALCQILRVAKLNIVDFFKELPQFIVKVGPILSNLYGTDWEKRLEAKELQANFVHLSLLSKWYKRVYREIFLTSEVNVDKQSAVANATCYVSDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVAILAILIIHVPIRLRNFVINDSSQFVKKGSKGVDLLASLCKSYETSEDELRKTMERANNLIEEILKKKPCLASECRTENLDNIDTDGLIYFEGLMEEPSLSSSLDVLEKDYVDAIHNKGDLDERVFINEEDSLLGSGSLSGGAMNINGAKRKSDSIASPTKTITSPLSPYRSPSASHGNGILCGSNSKMAATPVSTAMTTAKWLRTVISPLPSKPSAELEQFLSSCDKDVTTDVIRRAHIILEAIFPSSGLGEHCVTGSLQCTNLMDNIWAEQRRLEALKLYYRVLQAMCTAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLGLLAEPMPSLDAIAMHMNISCGGLPSVPSLQKHETSP---------GQNGDIRSPKRLCTEYRSVLVERNSFTSPVKDRLLAFNNLKSKLPPPALQSAFASPTRPNPGGGGETCAETAISIFFSKIVKLAAVRINGMVERLQLSQQIRESAYRLFQQILSQQTTLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKHQVFRSVFVDWSSARRRGKTGPEHVDIITFYNEIFIPAVKPLLVELAPAGTAQKTNRLPEA-NNITDGQCPGSPKITPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSAKSYYACVGESTHAYQSPSKDLTDINNRLNGTRKLRGTLNFDDVDVGLVSDSLVANSLYLQNGSCA-SSGSPLKSEQPDS 1020
Match: A0A5B7AGK9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA54651.1}))
HSP 1 Score: 1597.02 bits (4134), Expect = 0.000e+0
Identity = 795/1029 (77.26%), Postives = 893/1029 (86.78%), Query Frame = 0
Query: 1 MENSKPSAPESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGS-SRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNG-PKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
ME++KP +P + +EARF FCK+GLS+D+ T T+ MKLF+ESKHLL +S A+G+GTPEEAE YWF F+LYS+KRL +RN ++ SDE +LCQ+LR AKLN+VDFFKE+PQFIVKVGPIL NLYG DWEKRLEAKELQANFVH+S+LSK+YKR Y E+FL + N DKQSA + SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLV+ILAILIIHVP R R F ++DSS+FVKKG KGVDL+ASLCK YETSEDELRKTME+ N LIE ILKKKPCLASE + ENLDN+ TDGLIYF+GLMEE +LS++L LEKDY DAI + G+LDER+F++ +DS+LGS SLSGGA+NI+G KRK DS+ASPTKTITSPLSPFRSP+ S ++G ++GS S++ +TPVSTAMTTAKWLR VI PLPSKPSAELE FLS CD++VT +V+RRAHIILEAIFPSSG G+ TGSLQ TNLMDNIWAEQRRLEA+KLYYRVLQAMCTAEAQIL+A+NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEI RLGLLAEPMPSLDAIA+H+N+S G L PV SLQK E+S SGQNGDIRSPKRLCTE RSVLVERNSF+SPVKDR LA NNLKSKL PPALQSAF+SPTR NPGGGGETCAETAI++ F KIVKLAAVRIN M+ERLQL QQIRE+VYCLFQ IL Q+T LFF+RHIDQ+IL C YG+AKISQL LTFREII NYRKQ QCKPQVFRSVFVDWS+ARR GKTG +HVDIITFYNE+FIPAVKPLLVELAP G +K++++PEA NN GQ PGSPK++ FPSLPDMSPKKVSA HNVYVSPLRSSKMDAL SH+SKSYYACVGESTHAYQSPSKDLTAINN LNG P+K R LNFD DVG+VSDSLVANS+YLQNGSCA SSG+PLKSEQPD+
Sbjct: 8 MEDAKPLSPPNNDRGSMEARFTDFCKNGLSLDDNTFTQTMKLFSESKHLLLTTLS-AIGSGTPEEAERYWFAFILYSVKRLIERNEDNVNQGSDENGFALCQILRVAKLNIVDFFKELPQFIVKVGPILSNLYGTDWEKRLEAKELQANFVHLSLLSKWYKRVYREIFLTSEVNVDKQSAVANATCYVSDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVAILAILIIHVPIRLRNFVINDSSQFVKKGSKGVDLLASLCKSYETSEDELRKTMERANNLIEEILKKKPCLASECRTENLDNVETDGLIYFEGLMEEPSLSSSLGILEKDYVDAIRNKGELDERVFINEDDSLLGSGSLSGGAMNINGAKRKIDSIASPTKTITSPLSPFRSPSASHVNG--ILGSNSKMAATPVSTAMTTAKWLRTVISPLPSKPSAELEQFLSSCDKDVTTDVIRRAHIILEAIFPSSGLGEHCVTGSLQCTNLMDNIWAEQRRLEALKLYYRVLQAMCTAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLGLLAEPMPSLDAIAMHMNISCGGLPPVPSLQKHETS---------SGQNGDIRSPKRLCTEYRSVLVERNSFSSPVKDRFLAFNNLKSKLPPPALQSAFASPTRPNPGGGGETCAETAINIFFGKIVKLAAVRINGMVERLQLSQQIRESVYCLFQQILSQRTTLFFSRHIDQIILCCFYGIAKISQLTLTFREIINNYRKQSQCKPQVFRSVFVDWSSARRRGKTGPEHVDIITFYNEIFIPAVKPLLVELAPAGTAQKTNRLPEA-NNITDGQCPGSPKITPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTPRKLR--LNFDDVDVGLVSDSLVANSLYLQNGSCA-SSGSPLKSEQPDS 1020
Match: A0A5J5B8L8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539039.1}))
HSP 1 Score: 1584.31 bits (4101), Expect = 0.000e+0
Identity = 787/1027 (76.63%), Postives = 881/1027 (85.78%), Query Frame = 0
Query: 1 MENSKPSAPESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQ----SAAGDGSDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
ME++KP +P + +EARF FCK+GLS+D+ T T+A+KLFNESKHLL A +S A+G+GTPEEAE YWF F+L S+KRL ++N ++ SDE +LCQ+LR AKLN+VDFFKE+PQFIVKVGPIL N+YG DWEKRLEAKELQANFVH+S+LSK+YKR Y E FL + N DKQ +A G SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLV+ILAILIIHVP R R F ++DSSRFVK G+KGVDL+ASLCK YETSEDELRKTMEK N +IE ILKKKPCLAS+ + ENLDNI TDGLIYF+GLMEE +LS+ L LEKDY DAI G+LDER+F++ EDS+LGS SLSGGA+NI G KRKFD +ASPTKTITSPLSP+RSP+ S +G + +S++ +TPVSTAMTTAKWLR VI PLPSKPSAELE FLS CD++VT +V RRAHIILEAIFPSSG G+R TGSLQ TNLMDNIWAEQRRLEA+KLYYRVLQAMCTAEAQIL+A+NLTSLLTNERFHRCMLACSAELVLATHKTV MLFP VLE TGITAFDLSKVIESF+RHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARP LSAEI RLGLLAEPMP+LDAIA+H+N+S G L PV SLQK E+SP GQNGDIRSPKRLCTE RSVLVERNSFTSPVKDRLL NN KSKL PPALQS+F+SPTR NPGGGGETCAETAI+V F KIVKLAAVRIN M+E++QL QQIRENVY LFQ IL Q+T LFFNRHIDQ+IL C YG+AKISQLNLTF+EIIYNYRKQP CK QVFRSVFVDWS+AR GKTG +HVDIITFYNE+FIPAVKPLLVELAP G+ +K++++PEA NN GQ PGSPK+S FPSLPDMSPKKVSA HNVYVSPLRSSKMDAL SH+SKSYYACVGESTHAYQSPSKDLT INN LNG +K RG LNFD DVG+VSDSLVANS+YLQNGSCASSSG LKSEQPD+
Sbjct: 8 MEDAKPLSPGNNDGGSMEARFTDFCKNGLSLDDNTFTQALKLFNESKHLLLATLS-AIGSGTPEEAERYWFAFILCSVKRLIEKNEDNVNQGSDENGFALCQILRVAKLNIVDFFKELPQFIVKVGPILSNIYGTDWEKRLEAKELQANFVHLSLLSKWYKRVYWEFFLTSEVNDDKQPVVANATGFVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVAILAILIIHVPVRLRNFVINDSSRFVKNGNKGVDLLASLCKSYETSEDELRKTMEKANNIIEDILKKKPCLASQCRTENLDNIDTDGLIYFEGLMEEPSLSSCLDLLEKDYVDAIRDKGELDERVFINEEDSLLGSGSLSGGAMNIIGAKRKFDLIASPTKTITSPLSPYRSPSASHGNGILCGSNSKMAATPVSTAMTTAKWLRTVISPLPSKPSAELERFLSSCDKDVTTDVTRRAHIILEAIFPSSGLGERCVTGSLQCTNLMDNIWAEQRRLEALKLYYRVLQAMCTAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVMMLFPAVLEGTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPTLSAEISRLGLLAEPMPALDAIAMHMNISCGGLPPVPSLQKHETSP---------GQNGDIRSPKRLCTEYRSVLVERNSFTSPVKDRLLTFNNPKSKLPPPALQSSFASPTRPNPGGGGETCAETAINVFFGKIVKLAAVRINVMVEKMQLSQQIRENVYYLFQKILSQRTNLFFNRHIDQIILCCFYGIAKISQLNLTFKEIIYNYRKQPLCKNQVFRSVFVDWSSARHRGKTGTEHVDIITFYNEIFIPAVKPLLVELAPVGSAQKTNRVPEA-NNISDGQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINNRLNGTRKLRGTLNFDDVDVGLVSDSLVANSLYLQNGSCASSSGATLKSEQPDS 1023
Match: B9SVG9 (Retinoblastoma-related protein)
HSP 1 Score: 1558.5 bits (4034), Expect = 0.000e+0
Identity = 774/1033 (74.93%), Postives = 871/1033 (84.32%), Query Frame = 0
Query: 1 MENSKPSAPES--------GLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDGSDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGS--SRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQ-IRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPD 1020
ME+ KPS + G N IE RF FCK GLS+ E EA+KLF +KHLL AN+S A+G G PEEAE +WF FV YS+KRLS++ ++ D+ ++LCQ+LR AKLN+VDFFKE+PQ++VK GPIL +YG DWE RLEAKELQANFVH+SILS++YKRAY ELFL D N DKQSA SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLVS+LAILIIHVP RFR F+++DS RFVKKGDKGVDL+ASLC Y+TSEDELRKTMEKTN LI ILKKKP +ASE K ENLDNI+TDGLIY++ LMEE++L ++L LEKDYEDAI G+LDER+F++ EDS+LGS SLSGGAI+++G KRKFD ++SPTKTITSPLSP RSPA N ++GS SR+ +TPVSTAMTTAKWLR VI PLPSKPS +LE FL+ CDR+VT++V+RRAHIILEAIFPS+ G+R TGSLQSTNLMDNIWAEQRRLEA+KLYYRVL+AMCTAEAQIL+A NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARP+LSAEI RLGLLAEPMPSLDAIA+H+N SSG L P++S+ K E SP GQNGDIRSPKR CT+ RSVLVERNSFTSPVKDRLLA NLKSKL PP LQSAF+SPTR NPGGGGETCAET I++ F+KI KLAAVRIN M+ERLQ QQ IRENVY LFQ +L QQT+LFFNRHIDQ+IL C YGVAKIS++NLTFREIIYNYRKQPQCKPQVFRSVFVDWS+AR NG+TG+DHVDIITFYNE+FIPA KPLLVE+ G K SQ+PE +NNN GQ P SPKVS FPSLPDMSPKKVSAAHNVYVSPLR+SKMDAL SH+SKSYYACVGESTHAYQSPSKDLTAINN LNG + RG LNFD DVG+VSDS+VA S+YLQNGSCAS+SG PLK+EQPD
Sbjct: 1 MEDMKPSTASTKNLHHDGVGENDTIEVRFTDFCKIGLSVSEDAYEEAIKLFKGTKHLLLANIS-AIGNGMPEEAERFWFAFVSYSVKRLSEKIRDNMQQRPDDNGLTLCQILRRAKLNIVDFFKELPQYVVKAGPILSTMYGVDWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSATAYMSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPVRFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADILKKKPHMASEYKNENLDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELDERVFINEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPASHT---NGILGSTNSRMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFSSGGLPPLSSVSKHEISP---------GQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIRENVYRLFQQVLSQQTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPE-VNNNKDGQCPASPKVSPFPSLPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRNIRGSLNFDDVDVGLVSDSMVAKSLYLQNGSCASTSGAPLKTEQPD 1019
Match: A0A834G854 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7123371.1}))
HSP 1 Score: 1538.47 bits (3982), Expect = 0.000e+0
Identity = 761/1024 (74.32%), Postives = 858/1024 (83.79%), Query Frame = 0
Query: 1 MENSKPSAP-ESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQS----AAGDGSDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSE 1017
M+ KPSA +SG IEARF FCK GLS+ E T TEAMKLF+ESKHLL NVS A+GTGT EEAE YWF FVLYS++RLS+ N++DS + + +LCQ+LR AKLN+VDFFKE+PQFI+K GPIL YGADWEKRL+AKELQANFVH+S+LSKYYKRA+ E FL D+ +QS A G SDYHRFGWLLFLALR+HAFSRFKDLVTCTNGLV+ILAILIIHVP R R F+++DS+RFVKKG KGVDL+ASLC YETSEDELRKT+EK N LI ILKKKPC AS+ ENL+NI TD LIYF+ LMEE +LS +L LEKDY DA + +LDER+F++ EDS+L S SLSGGA+NISG KRK DS+ SP KTITS LS + SP+ S +G +S+ +TPV+TAMTTAKWLR VI PLP KPS ELE FLS CDR+VT +V RRA+IILEAIFPS+G GDR T SLQ T+LMD+IW +QRRLEA+KLYYRVLQAMCTAEAQIL A+NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLT+ARPALS+EI RLGLLAEPMPSLDAIA+H+N+S G L V SLQK E+ +GQNGD+RSPKRLCTE RS+LVERN FTSPVKDR L NNLKSKL PPALQSAF+SPTR NP GGETCAETAI++ F KI+KLAAVRIN MIERLQL QQIRE+VYCLFQ IL Q+T LFF+RHIDQ+IL CLYGVAKISQLNLTFREII NYRKQP CKPQVFRSVFVDWS+AR +GKTG++H+DII FYNE+FIPAVKPLLVE+AP G +K+++ + +NNN GQ PGSPKVS FPSLPDMSPKKVSA HNVYVSPLRSSKMDAL S++SKSYYACVGESTHAYQSPSKDLTAINN LNG +K RG LNFD DVG+VSDSLVANS+YLQNGSCASSSG P+KSE
Sbjct: 8 MDEQKPSASSDSGSQGSIEARFSDFCKSGLSLAENTYTEAMKLFSESKHLLSTNVS-AIGTGTSEEAERYWFAFVLYSVRRLSESNTDDSSQGNGQNEFTLCQILRLAKLNIVDFFKELPQFIIKSGPILSIQYGADWEKRLQAKELQANFVHLSLLSKYYKRAFREFFLTSDSKVGEQSTDANATGYVSDYHRFGWLLFLALRSHAFSRFKDLVTCTNGLVAILAILIIHVPIRLRNFTINDSARFVKKGSKGVDLLASLCNSYETSEDELRKTLEKANGLIADILKKKPCPASQCVTENLENIDTDDLIYFEDLMEEASLSASLDILEKDYADATRNKCELDERVFINEEDSLLASGSLSGGAMNISGAKRKIDSITSPAKTITSALSHYGSPSASQPNGIPCTSNSKPAATPVTTAMTTAKWLRTVISPLPPKPSLELERFLSSCDRDVTSDVTRRANIILEAIFPSNGLGDRGVTISLQCTSLMDSIWTKQRRLEALKLYYRVLQAMCTAEAQILQASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTIARPALSSEINRLGLLAEPMPSLDAIALHMNISCGSLPCVPSLQKSENP---------TGQNGDMRSPKRLCTEYRSLLVERNPFTSPVKDRFLVLNNLKSKLPPPALQSAFASPTRPNPVAGGETCAETAINIFFGKIIKLAAVRINGMIERLQLSQQIRESVYCLFQQILSQRTTLFFSRHIDQIILCCLYGVAKISQLNLTFREIIVNYRKQPHCKPQVFRSVFVDWSSARHHGKTGQEHLDIIAFYNEIFIPAVKPLLVEVAPVGTSQKANRNAD-VNNNTDGQCPGSPKVSSFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISNSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKLRGTLNFDDVDVGLVSDSLVANSLYLQNGSCASSSGAPVKSE 1020
Match: A0A067L458 ((Uncharacterized protein {ECO:0000313|EMBL:KDP42033.1}))
HSP 1 Score: 1528.84 bits (3957), Expect = 0.000e+0
Identity = 763/1030 (74.08%), Postives = 869/1030 (84.37%), Query Frame = 0
Query: 1 MENSKPSAPESGLNPDIEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSS--RIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQ-IRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
+ NS P + G N E RF FCK GL +DE T EA++LF E+KHLL AN+S ++G GT EEAE +WF FVLYS+KRLS+++S++S SD+ ++LCQ+LR AKLN+VDFFKE+PQ++VK GPIL N+YGADWE RLEAKELQANFVH+SILS++YKRAY ELFL D N DKQSA S+YHRFGWLLFLALR HAFSRFKDLVTCTNGLVS+LA+L+IHVP R F+++DS FVKKGDKGVDL+ASLC Y+TSEDELRKTMEKTN LI +LKKKP LA E K ENLD+I+ DGLIY++ LMEE++L T+LS LEKDY+DAI G+LDER+F++ EDS+LGS SLSGGAIN++G KRKFD M+SPTKTITSPLS +SPA N + GS+ ++ +TPVSTAMTTAKWLR VI PLPSKPSA+LE FL+ CDR+VT++V+RRA I+LEAIFPSS G+R TGSLQST LMDNIWAEQRRLEA+KLYYRVL+AMCTAEAQIL+A NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARP+LSAEI RLGLLAEPMPSLDAIA+H+N SS L P+ SLQK E P GQNGDIRSPKR C + RSVLVERNSFTSPVKDRLLA +NLKSK LPP LQSAF+SPTR NPGGGGETCAET I+V F+KI KLAAVRIN M+ERLQ QQ IRENVY LFQ IL Q+T+LFFNRHIDQ+IL C YGVAKIS++NLTFREII+NYRKQPQCKPQVFRSVF+DWS+AR NG+TG+DHVDIITFYNE+FIPA KPLLVE+ G + K+S PE +NNN GQ P SPKVS FPSLPDMSPKKVSA HNVYVSPLR+SKMDAL SH+SKSYYACVGESTHAYQSPSKDLTAINN LNG +K RG LNFD DVG+V+DS V+ S+YLQNG+CASSSGTPLKSEQPD+
Sbjct: 4 INNSHPDGGDGG-NDATEVRFSEFCKTGLCLDEDTCKEALQLFKETKHLLSANIS-SIGNGTSEEAERFWFAFVLYSVKRLSEKSSDNSQQRSDDNGLTLCQILRCAKLNIVDFFKELPQYVVKAGPILSNMYGADWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSAVSSETAYLSEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLMIHVPVHCRNFNLNDSQWFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADLLKKKPRLAPECKNENLDDINPDGLIYYEDLMEESSLQTSLSILEKDYDDAIRCKGELDERVFINDEDSLLGSGSLSGGAINVTGTKRKFDQMSSPTKTITSPLSCHQSPASH---ANGIFGSTNPKMAATPVSTAMTTAKWLRTVISPLPSKPSAQLERFLASCDRDVTNDVIRRAQIMLEAIFPSSALGERCVTGSLQSTKLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAMHINFSSVSLPPLPSLQKHELCP---------GQNGDIRSPKRPCPDYRSVLVERNSFTSPVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGETCAETGINVFFSKINKLAAVRINGMVERLQQSQQHIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIFNYRKQPQCKPQVFRSVFIDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGAITKASPTPE-VNNNKDGQCPASPKVSPFPSLPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGTLNFDDVDVGLVNDSTVSKSLYLQNGNCASSSGTPLKSEQPDS 1017
Match: A0A6J1HQD5 ((retinoblastoma-related protein-like isoform X2 {ECO:0000313|RefSeq:XP_022966826.1, ECO:0000313|RefSeq:XP_022966827.1}))
HSP 1 Score: 1528.07 bits (3955), Expect = 0.000e+0
Identity = 737/1031 (71.48%), Postives = 862/1031 (83.61%), Query Frame = 0
Query: 1 MENSKPSAP---ESGLNPD-IEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSA----AGDGSDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGGNVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPDA 1021
ME +KPSA + PD +E +F C++GL +DE +A++LF E+KHLL AN+S A+G+G PEEAE +W FVLYS+KRL ++ S + + +LC +LR KLN+V+FFKE+PQF+VK GP+L N+YGADWE RLEAKELQANFVH+S+LSKYYKR Y E F D N DKQSA G SDYHRFGWLLFLALR HAFSRFKDLVTCTNGLVSILAILI+HVP RFR F++ DS RFVKKG KGVDL SLC +Y+TSE+ELR+ MEK N LIE ILKKKPCLASE ++L+NI T+GLIYF+ LMEE +LS++L LEKDYEDAI + G+LDER+F++ EDS+LGS SLS GA+ ++G KRKFDSM SP + +TSP+SP RSP+ V +G + G++++ +TPVSTAMTTAKWLR VI PLP++PSAE+E FL+ CDR+VT++VVRRAHIILEAIFP+S G+R G+LQS NLMDNIWAEQRRLEA+KLYYRVL+AMC AE+Q+L+ NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL VA+P+L+AEI R+GLLAEPMPSLDAIA+ +N S +S + LQK ES P GQNGDIRSPKRLCT+ RSVLVERNSFTSPVKDRLLA +N+KSKLLPP LQSAF+SPTR NPGGGGETCAET IS+ F+KIVKLAAVR+N M+ERLQL QIRENVYCLFQ IL Q+ +L FNRHIDQ+IL C YGVAKISQL+LTFREIIYNYRKQPQCKPQVFR+VFVDWS+ARRNG++G+DHVDIITFYNE+FIP+VKPLLVE+ P + K+ ++P+ +NN+D PGSPK+S FPSLPDMSPKKVS+AHNVYVSPLRSSKMDAL SH+SKSYYACVGESTHA+QSPSKDLTAINN LNG +K RG LNFD DVG+VSDSLVANS+YLQNGSC SSSG P+KSEQPD+
Sbjct: 1 MEETKPSATNNCHTDGEPDTVEVQFTELCQNGLRLDESCCNQALRLFRETKHLLVANIS-AIGSGIPEEAERFWSAFVLYSVKRLRDKDPESSHSGPENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNIYGADWENRLEAKELQANFVHLSLLSKYYKRVYQEFFSTSDANVDKQSAKSCHTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLHRSLCNVYDTSEEELREVMEKANSLIEDILKKKPCLASECNSKSLENIDTEGLIYFEDLMEEASLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMNGIKRKFDSMGSPARMMTSPMSPLRSPSSHV-NGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPARPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIPGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPSLAAEINRMGLLAEPMPSLDAIAVQINFSGSGVSTMPILQKHESLP---------GQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAVSTMKTDRVPQVINNSD-APCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1019
Match: M5XKP7 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ22108.1}))
HSP 1 Score: 1525.76 bits (3949), Expect = 0.000e+0
Identity = 749/1011 (74.09%), Postives = 846/1011 (83.68%), Query Frame = 0
Query: 17 IEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGG-NVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPD 1020
+ ARF CK+GLS+DE T+AMKLF E+KHLL +N S A+G GTPEEAE +WF FVLYS+K LS++NS++S SD+ SL Q+LRA KLN+VDFFKE+PQF+VK GPIL NLYG DWE +LEAKELQANFV++S+LSKYYKRAY E FL D N DKQSA G S+YHRFGWLLFLALR H FSRFKDL+TC NGLV+ILAILIIHVP RFRKFS+ DS+ FVKKG KGVDL+ASLC +Y+TSEDELR TME N LI ILKKKPC ASE K ENL+N+ DGL YF+GLMEE +LS++L LEKDY+DAI S G+LDER+F++ EDS+LGS S SGG++N+SG KRK DS+ASPTKTITSPLSP RSPA V G +S++ +TPVSTAMTTAKWLR I PLPSKPS ELE FL+ CDR+VT++V+RRA +ILEAIFPS G+R TGSLQ NLMDNIWAEQRRLEA+KLYYRVL+AMC AEAQIL+A NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEI RL LLAEPMPSLD IA+ +N S G L PV SLQK E+SPG QNGDIRSPKRLCT+ RSVL+ERNSFTSPVKDRLLA +NLKSKL PP LQSAF+SPTR NPGGGGETCAET IS+ F+KIVKLAAVRIN M+ER+QL QQIRENVY LFQ IL+Q+T+LFFNRHIDQ+IL C YGVAKISQL LTFREII+NYRKQPQCK VFRSV+VDW ARRNG+ ++HVD+ITFYNE+FIP+VK LLVEL G +++ +PEA NNND Q PGSPKVS FP+LPDMSPKKVSAAHNVYVSPLRSSKMDAL SH+SKSYYACVGESTHAYQSPSKDLTAINN LNG +K RG LNFD DVG+VSDS+VANS+YLQN + S P+K+EQPD
Sbjct: 32 VGARFTDLCKNGLSLDENPYTQAMKLFKETKHLLISNAS-AIGNGTPEEAERFWFAFVLYSVKTLSEKNSDNSQLSSDDNGFSLFQILRAVKLNIVDFFKELPQFVVKAGPILSNLYGIDWENKLEAKELQANFVYLSLLSKYYKRAYREFFLTSDANADKQSAVASGTGYVSEYHRFGWLLFLALRVHVFSRFKDLLTCANGLVAILAILIIHVPVRFRKFSIHDSTHFVKKGGKGVDLLASLCNIYDTSEDELRNTMEMANALIADILKKKPCSASECKHENLENMDPDGLTYFEGLMEEPSLSSSLDILEKDYDDAIRSKGELDERVFINEEDSLLGSRSFSGGSMNLSGVKRKVDSIASPTKTITSPLSPHRSPASHVNGG----ANSKMVATPVSTAMTTAKWLRTFISPLPSKPSTELEGFLASCDRDVTNDVIRRAQVILEAIFPSISLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLMLLAEPMPSLDEIAMQINFSCGGLPPVPSLQKHENSPG---------QNGDIRSPKRLCTDYRSVLLERNSFTSPVKDRLLAFSNLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRINGMVERMQLSQQIRENVYRLFQQILVQRTSLFFNRHIDQIILCCFYGVAKISQLTLTFREIIHNYRKQPQCKSLVFRSVYVDWPPARRNGRPAQEHVDVITFYNEIFIPSVKSLLVELGSAGPTTTRANVVPEANNNND-AQCPGSPKVSTFPTLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKLRGTLNFDNVDVGLVSDSMVANSLYLQNQN--GSLEAPVKTEQPD 1025
Match: A0A6P5RBI0 ((retinoblastoma-related protein {ECO:0000313|RefSeq:XP_021800314.1, ECO:0000313|RefSeq:XP_021800315.1}))
HSP 1 Score: 1525.38 bits (3948), Expect = 0.000e+0
Identity = 748/1011 (73.99%), Postives = 844/1011 (83.48%), Query Frame = 0
Query: 17 IEARFIAFCKDGLSMDEITMTEAMKLFNESKHLLQANVSVAVGTGTPEEAELYWFVFVLYSLKRLSQRNSNDSITESDEKRVSLCQMLRAAKLNLVDFFKEIPQFIVKVGPILGNLYGADWEKRLEAKELQANFVHMSILSKYYKRAYHELFLAKDTNTDKQSAAGDG----SDYHRFGWLLFLALRAHAFSRFKDLVTCTNGLVSILAILIIHVPARFRKFSVDDSSRFVKKGDKGVDLIASLCKMYETSEDELRKTMEKTNKLIEGILKKKPCLASEVKIENLDNISTDGLIYFDGLMEETTLSTNLSTLEKDYEDAICSTGDLDERLFMDAEDSVLGSSSLSGGAINISGPKRKFDSMASPTKTITSPLSPFRSPAKSVMSGNVVIGSSRIPSTPVSTAMTTAKWLRDVICPLPSKPSAELESFLSKCDRNVTHEVVRRAHIILEAIFPSSGAGDRSATGSLQSTNLMDNIWAEQRRLEAVKLYYRVLQAMCTAEAQILNANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPVVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEICRLGLLAEPMPSLDAIAIHVNMSSGVLSPVTSLQKLESSPGIDSLHLTSGQNGDIRSPKRLCTEPRSVLVERNSFTSPVKDRLLATNNLKSKLLPPALQSAFSSPTRANPGGGGETCAETAISVVFAKIVKLAAVRINSMIERLQLPQQIRENVYCLFQNILMQQTALFFNRHIDQVILSCLYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSAARRNGKTGKDHVDIITFYNEVFIPAVKPLLVELAPGG-NVKKSSQIPEAMNNNDKGQIPGSPKVSKFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALNSHNSKSYYACVGESTHAYQSPSKDLTAINNHLNGPKKFRGMLNFD--DVGVVSDSLVANSIYLQNGSCASSSGTPLKSEQPD 1020
+ ARF CK+GLS+DE T+AMKLF E+KHLL N S A+G GTPEEAE +WF FVLYS+K LS++NS++S SD+ SL Q+LRA KLN+VDFFKE+PQF+VK GPIL NLYG DWE +LEAKELQANFV++S+LSKYYKRAY E FL D N DKQSA G S+YHRFGWLLFLALR H FSRFKDL+TC NGLV+ILAILIIHVP RFRKFS+ DS F KKGD GVDL+ASLC +Y+TSEDELR ME N LI ILKKKPC ASE K ENL+N+ DGL YF+GLMEE +LS++L LEKDY+DAI S G+LDER+F++ EDS+LGS S SGG++N+SG KRKFDSMASPTKTITSPLSP RSPA V G +S++ +TPVSTAMTTAKWLR I PLPSKPS ELE FL+ CDR+VT++V+RRA +ILEAIFPS G+R TGSLQ NLMDNIWAEQRRLEA+KLYYRVL+AMC AEAQIL+A NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFP VLERTGITAFDLSKVIESF+RHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEI RL LLAEPMPSLD IA+ +N S G L PV SLQK E+SPG QNGDIRSPKRLCT+ RSVL+ERNSFTSPVKDRLLA++NLKSKL PP LQSAF+SPTR NPGGGGETCAET IS+ F+KIVKLAAVRIN M+ER+QL QQIRENVY LFQ IL+Q+T+LFFNRHIDQ+IL C YGVAKISQL+LTFREII+NYRKQPQCK VFRSV+VDW ARRNG+ ++HVD+ITFYNE+FIP+VK LLVEL G +++ +PEA NNND Q PGSPKVS FP+LPDMSPKKVSAAHNVYVSPLRSSKMDAL SH+SKSYYACVGESTHAYQSPSKDLTAINN LN +K RG LNFD DVG+VSDS+VANS+YLQN + S P+K+EQPD
Sbjct: 30 VRARFTDLCKNGLSLDENPYTQAMKLFKETKHLLITNAS-AIGNGTPEEAERFWFAFVLYSVKTLSEKNSDNSQLSSDDNGFSLFQILRAVKLNIVDFFKELPQFVVKAGPILSNLYGIDWENKLEAKELQANFVYLSLLSKYYKRAYREFFLTSDANADKQSAVASGTGYVSEYHRFGWLLFLALRVHVFSRFKDLLTCANGLVAILAILIIHVPVRFRKFSIHDSPHFAKKGDNGVDLLASLCNIYDTSEDELRNAMEMANALIADILKKKPCSASECKHENLENMDPDGLTYFEGLMEEPSLSSSLEILEKDYDDAIRSKGELDERVFINEEDSLLGSRSFSGGSMNLSGVKRKFDSMASPTKTITSPLSPHRSPASHVNGG----ANSKMVATPVSTAMTTAKWLRTFISPLPSKPSTELEGFLASCDRDVTNDVIRRAQVILEAIFPSISLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLMLLAEPMPSLDEIAMQINFSCGGLPPVPSLQKHENSPG---------QNGDIRSPKRLCTDYRSVLLERNSFTSPVKDRLLASSNLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRINGMVERMQLSQQIRENVYRLFQQILVQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIHNYRKQPQCKSLVFRSVYVDWPPARRNGRPAQEHVDVITFYNEIFIPSVKSLLVELGSAGPTTTRANVVPEANNNND-AQCPGSPKVSTFPTLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKLRGTLNFDNVDVGLVSDSMVANSLYLQNQN--GSLEAPVKTEQPD 1023
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AHS7 | E-Value: 0.000e+0, PID: 77.72 | (Putative retinoblastoma-related protein isoform X... [more] |
| A0A5B7AD25 | E-Value: 0.000e+0, PID: 78.34 | (Putative retinoblastoma-related protein isoform X... [more] |
| A0A5B7AGK9 | E-Value: 0.000e+0, PID: 77.26 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5465... [more] |
| A0A5J5B8L8 | E-Value: 0.000e+0, PID: 76.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| B9SVG9 | E-Value: 0.000e+0, PID: 74.93 | Retinoblastoma-related protein[more] |
| A0A834G854 | E-Value: 0.000e+0, PID: 74.32 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7123... [more] |
| A0A067L458 | E-Value: 0.000e+0, PID: 74.08 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4203... [more] |
| A0A6J1HQD5 | E-Value: 0.000e+0, PID: 71.48 | (retinoblastoma-related protein-like isoform X2 {E... [more] |
| M5XKP7 | E-Value: 0.000e+0, PID: 74.09 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ2210... [more] |
| A0A6P5RBI0 | E-Value: 0.000e+0, PID: 73.99 | (retinoblastoma-related protein {ECO:0000313|RefSe... [more] |
Pages
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
