DCAR_003204

Resource Type: 
Polypeptide
Name: 
DCAR_003204
Identifier: 
DCAR_003204.mRNA-protein
Sequence: 
MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYII
SAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWL
PITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFV
WQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLS
MGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILS
QLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKI
QKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSY
AIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINM
FVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCF
FVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWI
LGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP*
Sequence Length: 
533
Sequence Checksum: 
1402d28c0a4e6d335313f296a8603501
View location in JBrowse: 
DCARv2_Chr1:36834958..36837719-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_003204, derives from mRNA, DCAR_003204.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BCM8 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})

HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 487/534 (91.20%), Postives = 514/534 (96.25%), Query Frame = 0
 
Query:    1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRF--LTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            MGHEV+LEL++STG TP VKS  STPG SAPRTP+ KAPAPISIPSPYI+SAPASQAQTPS RG+RTP +    TPRFLTPLGSPIRKALNFVKLDP+DAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAF+WQLYTLYLLVQLHEDF+KE+RYSRYMQLANAAFGEKLSK IALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTC TTPLTS EWYLVFTSAAV+LSQLPNLNSIAGISL+GA+TAVGYCTMIW+TSVAEGRIHGVSY+PTLSGS IQKIFDILN+VGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSY IILMCLFPLAIGGYWTYGQMIPANGGILT+LYLFHGQDTAKGLIGLINMFVI+NGLSTFQIYAMPMFDD+ESTY +R KKPCPWWLRVILRTLFGYFCFF+AVA+PFQGSFSGLIGGIYLPVTLAYPCFMW+IIKKPK+YSSVWWLNW+LGVLGVC+SVLLVAAG YVVIHTGVEGSFFKP
Sbjct:    1 MGHEVELELNSSTGATPVVKSADSTPGASAPRTPRLKAPAPISIPSPYIVSAPASQAQTPSGRGSRTPGWSRAMTPRFLTPLGSPIRKALNFVKLDPQDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFIWQLYTLYLLVQLHEDFDKEIRYSRYMQLANAAFGEKLSKFIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCDTTPLTSTEWYLVFTSAAVVLSQLPNLNSIAGISLIGAVTAVGYCTMIWLTSVAEGRIHGVSYDPTLSGSHIQKIFDILNSVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYTIILMCLFPLAIGGYWTYGQMIPANGGILTSLYLFHGQDTAKGLIGLINMFVIVNGLSTFQIYAMPMFDDLESTYTTRCKKPCPWWLRVILRTLFGYFCFFMAVAVPFQGSFSGLIGGIYLPVTLAYPCFMWVIIKKPKIYSSVWWLNWVLGVLGVCLSVLLVAAGTYVVIHTGVEGSFFKP 534
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218XGE4 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_031394993.1}))

HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 353/526 (67.11%), Postives = 421/526 (80.04%), Query Frame = 0
 
Query:   11 TSTGVTPEVKSEASTPGVSAP----RTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
             S  VTP   +   TP +SAP     +P       ++     I + P ++          TPR   TPRF+TPLGSPIR+AL+  KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIGIQAL+LPVAFT+LGWTW II +TLAF+WQLYTLYLLVQLHE  E  +RYSRYMQLA+AAFGE+L+K++ALFPI YLS GTC  LI+IGGS+ + FF ++C   TCS   LT  +WYLVFTSAAVILSQLPNLNSIAG+SL+GAITAVGYCT+IW+ SV+EGR+ GVSYNP    ++I ++FD+LN++GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMW+GVK +Y II +CLFPLAIGGYW YG MIP NGG+LTALY FHGQDTA+ L+GL  +FVIIN +S+FQIYAMPMFDDMES +  R+K+P PWWLRVILR +F Y CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL +K+PK+Y  +WWLNW LGVLG+ +S +L+AAG YVVI TG++ SFFKP
Sbjct:    8 NSNPVTPRPAAVNLTPPISAPPSQYHSPSLSRSPLLTAGGDQIEAVPKTKTPKSITPKISTPRISLTPRFITPLGSPIRRALHLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGIQALILPVAFTFLGWTWGIICMTLAFIWQLYTLYLLVQLHESHENGMRYSRYMQLASAAFGERLAKLLALFPIMYLSGGTCVALIIIGGSTSKMFFDLLCAG-TCSAEHLTPVQWYLVFTSAAVILSQLPNLNSIAGVSLIGAITAVGYCTLIWVISVSEGRMPGVSYNPIRGSTEIARVFDLLNSLGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWRGVKFAYLIIALCLFPLAIGGYWAYGHMIPENGGMLTALYAFHGQDTAQSLLGLTALFVIINAVSSFQIYAMPMFDDMESKFTMRLKRPLPWWLRVILRAMFAYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKMKRPKMYGPMWWLNWFLGVLGMALSGILIAAGVYVVIDTGIKVSFFKP 532
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833UL82 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5453839.1}))

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
 
Query:   29 SAPRTPKRK--APAPISIPSPYIISAPASQAQTPS--------------------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            SAP TP++   AP P  + +P  +S P SQ  +PS                     +  RTPR   TPRF+TPLGSP+RKAL   KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAFVWQLYTL+LLVQLHE  E  +RY RY+QL+   FG+KL K++A+FPI YLS GTC  LI+IGGS+ ++F+QIVC P TCS  PLTS EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TAV YCTMIW+ SVAEGR+ GVSYNP    ++I+ IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVKVSY +I  CLFPLAIGGYW YGQ IP NGG+LTALY FH QD ++ ++GL ++FVI+N +S+FQIYAMPMFDDMES Y  R K+PCPWWLR + R +FGY CFFVAVA+PF GS +GLIGG+ LPVTLAYPCFMWL IKKPK+YS +WWLNW+LGVLG+ +S +L+AAG YVVI TG+E SFFKP
Sbjct:   25 SAPLTPRKGSVAPTPPLVSTP-PVSCPPSQFHSPSLSRSPLLHEEHAAEAPRNKTPKTPRTPRLSLTPRFITPLGSPMRKALRMTKLDPQDAWLPITESRNGNQYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFVWQLYTLWLLVQLHESTETGMRYCRYLQLSCVTFGDKLGKLLAMFPIMYLSGGTCVALIIIGGSTSKQFYQIVCGP-TCSQ-PLTSVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAVAYCTMIWVVSVAEGRLPGVSYNPVRGKTQIEHIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKVSYTMIAACLFPLAIGGYWAYGQKIPENGGMLTALYAFHSQDVSQSVLGLTSLFVIVNAVSSFQIYAMPMFDDMESKYTIRKKEPCPWWLRAVFRAMFGYGCFFVAVAIPFLGSLAGLIGGLALPVTLAYPCFMWLKIKKPKMYSGMWWLNWVLGVLGMGLSGILIAAGVYVVIDTGIEASFFKP 547
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DGB2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_018806190.1}))

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
 
Query:   29 SAPRTPKRK--APAPISIPSPYIISAPASQAQTPS--------------------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            SAP TP++   AP P  + +P  +S P SQ  +PS                     +  RTPR   TPRF+TPLGSP+RKAL   KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAFVWQLYTL+LLVQLHE  E  +RY RY+QL+   FG+KL K++A+FPI YLS GTC  LI+IGGS+ ++F+QIVC P TCS  PLTS EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TAV YCTMIW+ SVAEGR+ GVSYNP    ++I+ IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVKVSY +I  CLFPLAIGGYW YGQ IP NGG+LTALY FH QD ++ ++GL ++FVI+N +S+FQIYAMPMFDDMES Y  R K+PCPWWLR + R +FGY CFFVAVA+PF GS +GLIGG+ LPVTLAYPCFMWL IKKPK+YS +WWLNW+LGVLG+ +S +L+AAG YVVI TG+E SFFKP
Sbjct:    9 SAPLTPRKGSVAPTPPLVSTP-PVSCPPSQFHSPSLSRSPLLHEEHAAEAPRNKTPKTPRTPRLSLTPRFITPLGSPMRKALRMTKLDPQDAWLPITESRNGNQYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFVWQLYTLWLLVQLHESTETGMRYCRYLQLSCVTFGDKLGKLLAMFPIMYLSGGTCVALIIIGGSTSKQFYQIVCGP-TCSQ-PLTSVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAVAYCTMIWVVSVAEGRLPGVSYNPVRGKTQIEHIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKVSYTMIAACLFPLAIGGYWAYGQKIPENGGMLTALYAFHSQDVSQSVLGLTSLFVIVNAVSSFQIYAMPMFDDMESKYTIRKKEPCPWWLRAVFRAMFGYGCFFVAVAIPFLGSLAGLIGGLALPVTLAYPCFMWLKIKKPKMYSGMWWLNWVLGVLGMGLSGILIAAGVYVVIDTGIEASFFKP 531
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I2D7 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 353/522 (67.62%), Postives = 420/522 (80.46%), Query Frame = 0
 
Query:   11 TSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            +ST +TP   + A TP VS P + +  +P+    P  +  +  A Q++TP A  +RTPR   TPRF+TPLGSP+R+ L   KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE  E  +RYSRY+QL NA FGE+L  ++ALFPI YLS GTC  LI+IGGS+ + F+QIVC   TC+  PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TA+GYCT IW+ SVAEGR+ GVSYNP   G+ I+ IF +LNA+GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMWKGVK SY II + LFPLAIGGYW YG +IP+NGGILTALY+FH QD ++ ++GL ++F+I+N +S+FQIY MPMFD MES Y +RMKKPCPWWLR + R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL IKKPK YS  WWLNW LGVLG+ +S +L+AAG YVVI TG+E  FF P
Sbjct:    8 SSTPITPRPATTAPTPPVSCPPS-QFHSPSLTRSPLLHTDNEEAPQSKTPKA--SRTPRLSLTPRFITPLGSPMRRVLRLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIINLTLAFIWQLYTLWLLVQLHESTETGMRYSRYLQLFNATFGERLGNLLALFPIMYLSGGTCVALIIIGGSTSKTFYQIVCG-ATCTKVPLTTVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAIGYCTSIWVVSVAEGRLPGVSYNPVKEGTDIEHIFSVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWKGVKFSYTIIALGLFPLAIGGYWAYGHLIPSNGGILTALYVFHSQDVSQFVLGLTSLFIIVNAVSSFQIYGMPMFDFMESKYTTRMKKPCPWWLRSLFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIKKPKTYSPTWWLNWGLGVLGMGLSSVLIAAGIYVVIDTGIEAKFFHP 525
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TUT2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_011088674.1}))

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 353/539 (65.49%), Postives = 422/539 (78.29%), Query Frame = 0
 
Query:    6 DLELSTSTGVTPEVKSEASTPGVSAPRTPKRK--APAPISIPSPYIISAPASQAQTPS----------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            D++  +S  +TP   S  +    SAP TP+    AP P    +P I+S P SQ  +PS              +TPR + TPRF+TPLGSP+RKA+   KLDP+DAWLPIT+SRNGNAYYAA+HTL SGIGIQALVLPVAFT LGWTW II LTLAF+WQLYTLYLLVQLHE  E  VRYSRYMQLA+A FGEKLSK +  FPI YLS GTC  LI+IGGS+ + F+Q +C     +  PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+G +TAVGYCT +WI SV+EGR+  VSYNP  + ++I +IFD+LNA+GIIAFAFRGHNL+LEIQATMPSSEK PS +PMW+GVK +Y I+ MCLFP+AIGGYW YG MIPANGG+L ALY FH +D A+G+IGLI+ FVI+N LS+FQIY MPMFDDMES Y  R KK CPWWLRVI+R +FGY CFFVAVA+PF GS +GL+GG+ LPVTLAYPCFMWL +KKPK+Y + WW+NW LGVLG+ +S +L+AAG YVVI TG++ SFFKP
Sbjct:   10 DVDAVSSAPITPRPASVDAVS--SAPITPRPASVAPTPPVAHTPPIVSLPPSQYHSPSLSRSPLLTPGGTNRKTPRIIRTPRFITPLGSPLRKAIKLTKLDPQDAWLPITESRNGNAYYAAYHTLCSGIGIQALVLPVAFTILGWTWGIIGLTLAFIWQLYTLYLLVQLHESPENGVRYSRYMQLASATFGEKLSKFLVAFPIMYLSGGTCVALIVIGGSTSKMFYQTLCGATCSNPKPLTNVEWYLVFTCAAVVLSQLPNLNSIAGVSLIGGLTAVGYCTAMWIVSVSEGRLPNVSYNPVRASTEIARIFDVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSSIPMWRGVKGAYLIVAMCLFPIAIGGYWAYGHMIPANGGMLAALYGFHSRDVARGVIGLISFFVIVNALSSFQIYGMPMFDDMESNYTRRFKKACPWWLRVIIRAMFGYGCFFVAVAIPFLGSVAGLVGGLSLPVTLAYPCFMWLKMKKPKMYGASWWVNWGLGVLGMGLSGILIAAGIYVVIETGIQVSFFKP 546
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2M2G6 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 342/467 (73.23%), Postives = 395/467 (84.58%), Query Frame = 0
 
Query:   66 RTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            RTPR   TPRF+TPLGSP+RKAL   KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE  E  +RYSRY+QL+ A FGE+L K++ALFPI YLS GTC  LI+IGGS+ + FFQIVC   TCS  PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SLVGA+TAVGYCTMIW  SVAEGR+ GVSYNP    +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMW+GV+VSY +I  CLFPLAIGGYW YGQ IPANGG+LTALY FH +D ++ ++GL ++FVI+N LS+FQIY MPMFDDMES Y  R K+PCPWWLR I R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL I+KPK+Y ++WWLNW LGVLG+ +S +L+AAG YVVI TGVE SFFKP
Sbjct:   68 RTPRLSLTPRFITPLGSPVRKALRMTKLDPQDAWLPITESRNGNKYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFIWQLYTLWLLVQLHESTENGMRYSRYLQLSCATFGERLGKLLALFPIMYLSGGTCVALIIIGGSTSKLFFQIVCGA-TCSAKPLTTVEWYLVFTCAAVVLSQLPNLNSIAGLSLVGAVTAVGYCTMIWAVSVAEGRLPGVSYNPVRGSTQVVRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWQGVRVSYTVISACLFPLAIGGYWAYGQKIPANGGMLTALYQFHSRDASQAVLGLTSLFVIVNALSSFQIYGMPMFDDMESKYTVRKKQPCPWWLRAIFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIRKPKMYGAMWWLNWFLGVLGMSLSAVLIAAGLYVVIDTGVEVSFFKP 533
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438K5X1 ((Lysine histidine transporter-like 8 {ECO:0000313|EMBL:RVX16595.1}))

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 352/522 (67.43%), Postives = 418/522 (80.08%), Query Frame = 0
 
Query:   11 TSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            +ST +TP   + A TP VS P + +  +P+    P  +  +  A Q++TP  + +RTPR   TPRF+TPLGSP+R+ L   KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIG QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE  E  +RYSRY+QL NA FGE+L  ++ALFPI YLS GTC  LI+IGGS+ + F+QIVC   TC+  PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TA+GYCT IW+ SVAEGR+ GVSYNP   G+ I+ IF +LNA+GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMWKGVK SY II + LFPLAIGGYW YG+MIP+NGGILTALY FH QD ++ ++GL ++F+I+N +S+FQIY MPMFD MES Y +RMKKPCPWWLR + R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL IKKPK YS  WWLNW LG+LG+ +S  L+AAG YVVI TG+E  FF P
Sbjct:    8 SSTPITPRPATTAPTPPVSCPPS-QFHSPSLTRSPLLHTDNEEAPQSKTP--KTSRTPRLSLTPRFITPLGSPMRRVLRLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGAQALVLPVAFTILGWTWGIINLTLAFIWQLYTLWLLVQLHESTETGMRYSRYLQLFNATFGERLGNLLALFPIMYLSGGTCVALIIIGGSTSKTFYQIVCG-ATCTKVPLTTVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAIGYCTSIWVVSVAEGRLPGVSYNPVKEGTDIEHIFSVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWKGVKFSYTIIALGLFPLAIGGYWAYGRMIPSNGGILTALYAFHSQDVSQFVLGLTSLFIIVNAVSSFQIYGMPMFDFMESKYTTRMKKPCPWWLRSLFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIKKPKTYSPTWWLNWGLGMLGMGLSGALIAAGIYVVIDTGIEAKFFHP 525
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3IBS7 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO80014.1}))

HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 355/538 (65.99%), Postives = 429/538 (79.74%), Query Frame = 0
 
Query:    1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGAR--TPRFLT----TPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            MG E + E+  ST +TP   S A TP +SAP +   +  +P    SP + S+P      P+A+  +  TPR  T    TPRF+TPLGSPIR+AL   +LDP DAWLPIT+SRNGNAYYAAFHTL SGIGIQALVLPVAFT LGWTW II LT+AF+WQLYTLY+LVQLHE  +  +RYSRY+QL  A FGEKL+K +ALFPI YLS GTCT LI+IGG++ + FF IVC   TC   P T+ EWYL+FT AAV+LSQLPNLNSIAG+SL+GAITA+GYCT+IW+ SV EGR+ GVSYNP    +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMW+GVK SY +I +CLFPLAIGGYW YGQMIP +GG+LTALY FHG+DT++ ++GL ++FVIIN +S+FQIYAMPMFDD+ES +V +MKKP PWW R I R + GY CFF+AVA+PF GS +GL+GGI LPVTLAYPCFMWL IKKPKV+S +WWLNWILGV+G+ +S +L+AAG YV+I TGVE SFFKP
Sbjct:    1 MGSEFNNEIG-STPITPRPGSVAPTPPISAPPS---QFHSPSLSRSPLLASSPDHDHIKPAAKTPKSSTPRNFTPKIRTPRFITPLGSPIRRALKLTRLDPNDAWLPITESRNGNAYYAAFHTLCSGIGIQALVLPVAFTILGWTWGIINLTIAFIWQLYTLYILVQLHESTDTGMRYSRYLQLCTATFGEKLAKWLALFPIMYLSGGTCTALIVIGGATLKMFFNIVCG-GTCKAQPPTTVEWYLIFTCAAVLLSQLPNLNSIAGVSLIGAITAIGYCTIIWVVSVVEGRMPGVSYNPVKGSTEVIRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWRGVKFSYTLIALCLFPLAIGGYWAYGQMIPKDGGMLTALYAFHGKDTSQFILGLTSLFVIINAVSSFQIYAMPMFDDVESVFVKKMKKPVPWWFRAISRAMIGYGCFFIAVAIPFLGSLAGLVGGIALPVTLAYPCFMWLKIKKPKVFSPMWWLNWILGVVGMALSGILIAAGLYVIIDTGVEVSFFKP 533
[Close]
BLAST of DCAR_003204 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JAY1 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO91998.1}))

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 355/536 (66.23%), Postives = 426/536 (79.48%), Query Frame = 0
 
Query:    1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLT----TPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
            MG E + E+  ST +TP   S A TP +SAP +   +  +P    SP + S+P           + TPR  T    TPRF+TPLGSPIR+AL   +LDP DAWLPIT+SRNGNAYYAAFHTL SGIGIQALVLPVAFT LGWTW II LT+AF+WQLYTLY+LVQLHE  +  +RYSRY+QL +A FGEKL+K +ALFPI YLS GTCT LI+IGGS+ + FF IVC   TC+  P T  EWYL+FTSAAV+LSQLPNLNSIAG+SL+GAITA+GYCT+IW+ SV EGR+ GVSYNP    +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVK SY +I +CLFPLAIGGYW YGQMIP +GG+LTALY FH +DT++ ++GL ++FVIIN +S+FQIYAMPMFDD+ES +V +MKKP PWW R I R + GY CFF+AVA+PF GS +GL+GGI LPVTLAYPCFMWL IKKPKV+S +WWLNWILGV+G+ +S +L+AAG YV+I TGVE SFFKP
Sbjct:    1 MGSEFNNEIG-STPITPRPGSVAPTPPISAPPS---QFHSPSLSRSPLLASSPDHIKPATKTPKSSTPRNFTPKIRTPRFITPLGSPIRRALKLTRLDPNDAWLPITESRNGNAYYAAFHTLCSGIGIQALVLPVAFTILGWTWGIINLTIAFIWQLYTLYILVQLHESTDTGMRYSRYLQLCSATFGEKLAKWLALFPIMYLSGGTCTALIVIGGSTLKMFFNIVCG-GTCTAQPPTPVEWYLIFTSAAVLLSQLPNLNSIAGVSLIGAITAIGYCTIIWVVSVVEGRMPGVSYNPVKGSTEVIRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKFSYTLIALCLFPLAIGGYWAYGQMIPKDGGMLTALYAFHSKDTSQFILGLTSLFVIINAVSSFQIYAMPMFDDVESVFVKKMKKPVPWWFRAISRAMIGYGCFFIAVAIPFLGSLAGLVGGIALPVTLAYPCFMWLKIKKPKVFSPMWWLNWILGVVGMALSGILIAAGLYVIIDTGVEVSFFKP 531
Match NameStatsDescription
A0A6L5BCM8E-Value: 0.000e+0, PID: 91.20Aa_trans domain-containing protein {ECO:0000259|Pf... [more]
A0A218XGE4E-Value: 0.000e+0, PID: 67.11(lysine histidine transporter-like 8 {ECO:0000313|... [more]
A0A833UL82E-Value: 0.000e+0, PID: 67.68(Uncharacterized protein {ECO:0000313|EMBL:KAF5453... [more]
A0A2I4DGB2E-Value: 0.000e+0, PID: 67.68(lysine histidine transporter-like 8 {ECO:0000313|... [more]
F6I2D7E-Value: 0.000e+0, PID: 67.62Aa_trans domain-containing protein {ECO:0000259|Pf... [more]
A0A6I9TUT2E-Value: 0.000e+0, PID: 65.49(lysine histidine transporter-like 8 {ECO:0000313|... [more]
A0A7N2M2G6E-Value: 0.000e+0, PID: 73.23Aa_trans domain-containing protein {ECO:0000259|Pf... [more]
A0A438K5X1E-Value: 0.000e+0, PID: 67.43(Lysine histidine transporter-like 8 {ECO:0000313|... [more]
A0A1R3IBS7E-Value: 0.000e+0, PID: 65.99(Amino acid transporter, transmembrane {ECO:000031... [more]
A0A1R3JAY1E-Value: 0.000e+0, PID: 66.23(Amino acid transporter, transmembrane {ECO:000031... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.