MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHL
AYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRA
GYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLK
YIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAP
WLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQ
GEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSL
NRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN*
| Relationships |
|---|
| The polypeptide, DCAR_010357, derives from mRNA, DCAR_010357. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7A388 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 252/340 (74.12%), Postives = 288/340 (84.71%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M + AVA+ G LG Y+ +K PP K+CGSPGGPP+TSPR++L+DGRHLAYKE GV KE AK+K+I+IHGF SSKD++LP+SQELIEELQIY LSFDRAGYGESDP PKR+VKSEA+DIQ+LAD LQIG +FYVIG+SMGAYP+WSCLKYIPHRLSGASLVVPFV+YWW CFP SLSKE L LL D+W FRVAHY PWLFN WMTQKWFPSLSI GNMA+FS PDLE+LK ++PS QEKI QQG YESLYRD++ GY WEFDP D+ NPFPNNEGSVHIWQG EDKIIPY LNRYLS++LPWIRYHEVPDAGHLL F + CEAI+++L L
Sbjct: 1 MIAEFAVALTVGFLGWAYLATKPPPPKICGSPGGPPVTSPRIKLSDGRHLAYKETGVSKEEAKYKIIVIHGFDSSKDLNLPVSQELIEELQIYFLSFDRAGYGESDPNPKRTVKSEAFDIQELADKLQIGSRFYVIGVSMGAYPIWSCLKYIPHRLSGASLVVPFVNYWWRCFPTSLSKEGLMRLLPGDRWTFRVAHYTPWLFNLWMTQKWFPSLSIMAGNMAVFSRPDLEMLKKLSKSPSVGQEKIQQQGIYESLYRDILAGYGKWEFDPMDITNPFPNNEGSVHIWQGYEDKIIPYKLNRYLSKELPWIRYHEVPDAGHLLIFDCSLCEAILKELFLQ 340
Match: A0A5J5C7B3 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 251/340 (73.82%), Postives = 289/340 (85.00%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M +LAVAV G+LG +Y+ +K PP K+CGSPGGPP+TSPR+ L+DGRHL+YKE GV KE AK K+I+IHGF SSKD++LPISQELIEELQIY LSFDRAGYGESDP PKR+VKSEA+DIQ+LAD LQIG +F+VIG+SMGAY +WSCLKYIPHRLSGA+LVVPFV+YWWPCFPASLSKE L LL D+W FRVAHY+PWLFN WMTQKWFPSLS+ GNMAIF DLE+LK ETPS +EKIVQQG YESLYRD++ GY WEFDP D+ NPFPN+EGSVHIWQG ED+IIPY LNRY+S+KLPWIRYHEVPD GH L F+ CEAI+R+LLL
Sbjct: 44 MIAELAVAVTVGILGWVYLATKPPPPKICGSPGGPPVTSPRITLSDGRHLSYKETGVSKEEAKHKIIVIHGFNSSKDVNLPISQELIEELQIYFLSFDRAGYGESDPNPKRTVKSEAFDIQELADKLQIGSRFHVIGVSMGAYAIWSCLKYIPHRLSGAALVVPFVNYWWPCFPASLSKEGLMRLLPGDRWTFRVAHYSPWLFNLWMTQKWFPSLSMMAGNMAIFCRQDLEMLKKLSETPSVGEEKIVQQGVYESLYRDILAGYGKWEFDPMDITNPFPNSEGSVHIWQGFEDRIIPYKLNRYISEKLPWIRYHEVPDVGHFLIFESILCEAILRELLLQ 383
Match: A0A314Z6A9 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 540.421 bits (1391), Expect = 0.000e+0
Identity = 249/340 (73.24%), Postives = 289/340 (85.00%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M V +A+AV GLLG Y K PP K+CGSPGGPP+TSPRV+L+DGRHLAY+E GVPKE AK K+I++HGF +SKD+ LP++QEL+EEL IY LSFDRAGYGESDPYP RSVKSEA+DIQ+LAD LQIG KFYVIGISMGAYPVW CLKYIPHRLSGASLVVPFVHYWWPC PA+LS+E LS L V DQWAFRVAHYAPWLF+WWMTQK+FPSLS+ GN +IFS DLE+++ E S QEKI QQG++ESL+RD+M GYA WEFDP+DL+NPFP NEGSVHIWQGLEDKIIPY LNRY+++KLPWIRYHEVPD GH L F+ + CEA+++ LLL
Sbjct: 54 MIVPVAIAVTVGLLGWAYQALKPPPPKICGSPGGPPVTSPRVKLSDGRHLAYREFGVPKEEAKHKIIVVHGFGTSKDLSLPVAQELVEELSIYFLSFDRAGYGESDPYPLRSVKSEAFDIQELADKLQIGSKFYVIGISMGAYPVWGCLKYIPHRLSGASLVVPFVHYWWPCVPANLSRETLSRLPVSDQWAFRVAHYAPWLFHWWMTQKFFPSLSMLSGNNSIFSRADLEMMQKVSEATSVGQEKITQQGDHESLFRDIMAGYAKWEFDPSDLKNPFPENEGSVHIWQGLEDKIIPYKLNRYIAEKLPWIRYHEVPDYGHFLIFEGHRCEAVLKALLLG 393
Match: A0A5B7A2W0 ((Putative Alpha/beta-Hydrolases superfamily protein isoform 1 {ECO:0000313|EMBL:MPA50178.1}))
HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 252/340 (74.12%), Postives = 284/340 (83.53%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M ++AVA++ G LG YV K PP K+CGSPGGPP+TSPR++L DGRHL+YKE GV KE AK+K+I+IHGF SSKD++LP+SQELIEELQIY LSFDRAGYGESDP PKR+VKSEA+DIQ+LAD LQ+G KF VIG+SMG YPVWSCLKYIPHRLSGASLVVP V+YWWPCFPA+LSKE LL QW FRVAHY PWLFNWWMTQ WFPSLSI GNMAIF+ DLEILK ETPS QEKI QQG YESL RD++ GY WEFDP D+ NPFPNNEGSVHIWQG +DK+IPY LNRYLS+KLPWIRYHEVPDAGHLL F + CEAI+R+LLL
Sbjct: 11 MIAQVAVALLVGFLGWAYVAIKPPPPKICGSPGGPPVTSPRIKLDDGRHLSYKETGVSKEKAKYKIIVIHGFDSSKDLNLPVSQELIEELQIYFLSFDRAGYGESDPNPKRTVKSEAFDIQELADKLQVGSKFNVIGVSMGGYPVWSCLKYIPHRLSGASLVVPMVNYWWPCFPANLSKEGFKTLLSPYQWTFRVAHYTPWLFNWWMTQNWFPSLSIMAGNMAIFNHQDLEILKKLSETPSVGQEKIRQQGVYESLSRDLLAGYGKWEFDPMDITNPFPNNEGSVHIWQGYDDKVIPYKLNRYLSEKLPWIRYHEVPDAGHLLIFNSSLCEAILRELLLQ 350
Match: A0A6P5TS03 ((uncharacterized protein LOC110769959 {ECO:0000313|RefSeq:XP_021829714.1}))
HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 247/340 (72.65%), Postives = 289/340 (85.00%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M V +A+A+ GLLG Y K PP K+CGSPGGPP+TSPRV+L+DGRHLAY+E GVPKE AK K+I++HGF SSKD+ LP++QEL+EEL IY LSFDRAGYG+SDPYP RSVKSEA+DIQ+LAD LQIG KFYVIGISMGAYPVW CLKYIPHRLSGASLVVPFVHYWWPC PA+LS+E LS L V DQWAFRVAHYAPWLF+WWMTQK+FPSLS+ GN +IFS DLE+++ E S QEKI QQG++ESL+RD++ GYA WEFDP+DL+NPFP NEGSVHIWQGLEDKIIPY LNRY+++KLPWIRYHEVPD GH L F+ + CEA+++ LLL
Sbjct: 1 MIVPVAIALTVGLLGWAYQALKPPPPKICGSPGGPPVTSPRVKLSDGRHLAYREFGVPKEEAKHKIIVVHGFGSSKDLRLPVAQELVEELSIYFLSFDRAGYGDSDPYPSRSVKSEAFDIQELADKLQIGSKFYVIGISMGAYPVWGCLKYIPHRLSGASLVVPFVHYWWPCVPANLSRETLSRLPVSDQWAFRVAHYAPWLFHWWMTQKFFPSLSMLSGNNSIFSRADLEMMQKVSEATSVGQEKITQQGDHESLFRDILAGYAKWEFDPSDLKNPFPENEGSVHIWQGLEDKIIPYKLNRYIAEKLPWIRYHEVPDYGHFLIFESHRCEAVLKALLLG 340
Match: A0A7J7FS63 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 241/340 (70.88%), Postives = 282/340 (82.94%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M V++ VA++ GLLG YV K PP KVCG+PGGPP+TSPRV+L+DGRHLAYKE GVPKE AK+K+I+IHGF SSKD+ L +SQE IEEL IY L FDRAGYGESDP+PKRSVK EA DIQ+LAD L IG KFY+IG SMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWP FPA +SK+ + L +D+W FRVAHYAPWLFNWWMTQKWFP+LS+ GNMA+F +PDLE+LK TP+ QEKI QQG YESLYRD++VGY+ W+F P D+ NPFPNNEGS+HIWQG ED+IIP +NRY+++KLPWIRYHEVPDAGHL+ F CE I+R+L L
Sbjct: 116 MIVQVGVALLAGLLGWAYVAIKPPPPKVCGTPGGPPVTSPRVQLSDGRHLAYKEKGVPKEEAKYKIIVIHGFDSSKDLDLAVSQEFIEELGIYFLLFDRAGYGESDPHPKRSVKGEALDIQELADKLDIGSKFYLIGFSMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPRFPADISKKGIKTLPARDRWTFRVAHYAPWLFNWWMTQKWFPNLSVMTGNMAVFCDPDLEMLKILSSTPTVGQEKIQQQGIYESLYRDILVGYSKWDFGPLDIANPFPNNEGSIHIWQGREDRIIPSLMNRYIAEKLPWIRYHEVPDAGHLMMFNSTVCEPILRELFLG 455
Match: B9SCS2 ((Catalytic, putative {ECO:0000313|EMBL:EEF38517.1}))
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 241/340 (70.88%), Postives = 287/340 (84.41%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
MFV +AV VV GLLG Y K PP K+CGSPGGPPI+SPR++L+DGR+LAY+E GVPKE AK+K+I+IHGF SSKD+ LP+S++ IEEL++Y L FDRAGYGESDPYP RSVKSEAYDIQ+LAD LQIGPKFYVIG+SMGAYP++ CLKYIPHRL+GASLVVPFVHYWWPC P ++S+E L L DQW FR+AH+APWLF WWMTQKWFPSLSI GN+AIF D+E++K ETPS QEK+ QQG +ESLYRD++ GY+ WEFDP+D+ NPFPNNEGSVH+WQG ED+IIPY +NRY+S+KLPWIRYHEVPDAGHLL F+ + CE I+R LLL
Sbjct: 43 MFVPIAVTVVVGLLGFAYQSLKPPPPKICGSPGGPPISSPRIKLSDGRYLAYREKGVPKEEAKYKIIVIHGFDSSKDLDLPVSKDFIEELRVYFLLFDRAGYGESDPYPSRSVKSEAYDIQELADKLQIGPKFYVIGVSMGAYPIYGCLKYIPHRLAGASLVVPFVHYWWPCLPPNISREGLQRLQKSDQWTFRIAHHAPWLFYWWMTQKWFPSLSIMSGNVAIFCPQDIEMMKKLSETPSVVQEKVRQQGVHESLYRDMIAGYSKWEFDPSDIINPFPNNEGSVHLWQGYEDRIIPYQINRYISEKLPWIRYHEVPDAGHLLIFRSDICETILRSLLLG 382
Match: A0A2R6P7B5 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 246/338 (72.78%), Postives = 280/338 (82.84%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLL 338
M V++ VA+ GLLG Y+ K PP KVCGSPGGPP+TSPRV+L+DGRHL+YKE GVPKE ++FK+I+IHGF SSKD+ LP+SQELIEELQIY L FDRAGYGESDP PKRSVKSEA+DIQ+LAD L IG +FYVIG+S+GAY VWSCLKYIPHRLSGASLVVP V+YWW C PA LSK A L QDQW FRVAHYAPWLF WWMTQKWFPSLSI GNM+IF DL++LK TPS QEKI QQG YESLYRD++ GYA WEFDP D+ NPFP NEGSVHIWQG ED+IIP+ +NRY+S+KLPWIRYHEVPDAGHLL + N EAI+R+LL
Sbjct: 33 MIVQVTVALTAGLLGWAYLAIKPPPPKVCGSPGGPPVTSPRVQLSDGRHLSYKEKGVPKEESRFKIIVIHGFDSSKDLDLPVSQELIEELQIYFLFFDRAGYGESDPNPKRSVKSEAFDIQELADKLHIGSRFYVIGLSIGAYAVWSCLKYIPHRLSGASLVVPLVNYWWSCVPADLSKAAFKTLAGQDQWTFRVAHYAPWLFQWWMTQKWFPSLSIMAGNMSIFCPQDLDVLKKLSTTPSVGQEKIRQQGVYESLYRDILAGYAKWEFDPLDITNPFPENEGSVHIWQGYEDRIIPFRVNRYISEKLPWIRYHEVPDAGHLLIYNSNLSEAILRELL 370
Match: A0A5E4FQ00 ((Full=PREDICTED: alpha/beta-Hydrolases superfamily {ECO:0000313|EMBL:VVA29470.1}))
HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 245/340 (72.06%), Postives = 285/340 (83.82%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLLLN 340
M V +A+A+ GLLG Y K PP K+CGSPGGPP+TSPRV+L+DGRHLAY+E GVPKE AK K+I++HGF SSKD+ LP +QELIEEL IY L FDRAGYGESDPYP RSVKSEA+DIQ+LAD LQIG KFYVIGISMGAYPVW CLKYIPHRLSGASLVVPFVHYWWPC PA+LS+E+LS L V DQWAFRVAHYAPWLF+WWMTQK+FPSLS+ GN ++FS DLE+LK E PS QEKI QQG +ESLYRD++ GYA WEFDP++L+NPFP+NEGS HIW+G EDKIIPY LNRY+++KLPWI YHEVP GHLL + + C+AI++ LLL
Sbjct: 1 MIVPVAIALTVGLLGWAYQALKPPPPKICGSPGGPPVTSPRVKLSDGRHLAYREFGVPKEEAKHKIIVVHGFDSSKDLSLPFAQELIEELSIYFLFFDRAGYGESDPYPSRSVKSEAFDIQELADKLQIGSKFYVIGISMGAYPVWGCLKYIPHRLSGASLVVPFVHYWWPCVPANLSRESLSTLPVSDQWAFRVAHYAPWLFHWWMTQKFFPSLSVLCGNTSVFSRTDLEMLKKVSEAPSVGQEKITQQGHHESLYRDILAGYAKWEFDPSELKNPFPDNEGSFHIWRGCEDKIIPYKLNRYIAEKLPWIHYHEVPGYGHLLFLESHLCDAILKALLLR 340
Match: A0A068UF62 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})
HSP 1 Score: 525.783 bits (1353), Expect = 0.000e+0
Identity = 242/338 (71.60%), Postives = 280/338 (82.84%), Query Frame = 0
Query: 1 MFVKLAVAVVGGLLGCIYVVSKRPPSKVCGSPGGPPITSPRVRLADGRHLAYKEVGVPKETAKFKVIIIHGFASSKDIHLPISQELIEELQIYILSFDRAGYGESDPYPKRSVKSEAYDIQQLADNLQIGPKFYVIGISMGAYPVWSCLKYIPHRLSGASLVVPFVHYWWPCFPASLSKEALSLLLVQDQWAFRVAHYAPWLFNWWMTQKWFPSLSINEGNMAIFSEPDLEILKNAPETPSTDQEKIVQQGEYESLYRDVMVGYANWEFDPTDLQNPFPNNEGSVHIWQGLEDKIIPYSLNRYLSQKLPWIRYHEVPDAGHLLAFKRNFCEAIIRDLL 338
MF ++AV +VGG L Y+ K P K+CGSP GPP+TSPRV+L+DGR+LAYKE GV KE AK+K+I+IHGF SSKD+ LPISQ+LI ELQIY+LSFDRAGYGESDPYPKRSVK+EAYDIQ+LAD L IGPKF++ GISMGAYPVW CLKYIPHRLSG +LVVPFVHYWWPC PA LSK +L LLVQDQW FRVAHY PWL NWWMTQKWFPSLSI EG I S DLEILK + + QEK+ QQG YESLYRD++ GY WEFDPTD+ +PFPN EGSVH+WQG ED+IIP+ +NRY+S+KLPWIRYHEVPDAGH LAF + CE+I+R+LL
Sbjct: 1 MFAQIAVGIVGGFLVWAYLSMKPAPPKICGSPDGPPVTSPRVKLSDGRYLAYKEAGVSKEQAKYKIILIHGFDSSKDMILPISQDLINELQIYLLSFDRAGYGESDPYPKRSVKTEAYDIQELADKLHIGPKFHIFGISMGAYPVWGCLKYIPHRLSGVALVVPFVHYWWPCLPAELSKHSLRKLLVQDQWVFRVAHYTPWLLNWWMTQKWFPSLSIMEGKTDILSSQDLEILKQSSGVLNDGQEKVRQQGLYESLYRDILAGYVQWEFDPTDIADPFPNKEGSVHLWQGCEDRIIPFEINRYISEKLPWIRYHEVPDAGHFLAFNGSLCESIVRELL 338
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A388 | E-Value: 0.000e+0, PID: 74.12 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5J5C7B3 | E-Value: 0.000e+0, PID: 73.82 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A314Z6A9 | E-Value: 0.000e+0, PID: 73.24 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5B7A2W0 | E-Value: 0.000e+0, PID: 74.12 | (Putative Alpha/beta-Hydrolases superfamily protei... [more] |
| A0A6P5TS03 | E-Value: 0.000e+0, PID: 72.65 | (uncharacterized protein LOC110769959 {ECO:0000313... [more] |
| A0A7J7FS63 | E-Value: 0.000e+0, PID: 70.88 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| B9SCS2 | E-Value: 0.000e+0, PID: 70.88 | (Catalytic, putative {ECO:0000313|EMBL:EEF38517.1}... [more] |
| A0A2R6P7B5 | E-Value: 0.000e+0, PID: 72.78 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
| A0A5E4FQ00 | E-Value: 0.000e+0, PID: 72.06 | (Full=PREDICTED: alpha/beta-Hydrolases superfamily... [more] |
| A0A068UF62 | E-Value: 0.000e+0, PID: 71.60 | AB hydrolase-1 domain-containing protein {ECO:0000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |