Resource Type:
Polypeptide
Name:
DCAR_010649
Identifier:
DCAR_010649.mRNA-protein
Sequence:
MADPQSPQKPPPKTYQITASSISYSKSTTTFSFRTCTPTPPNYILQDITL
TAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRK
LSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTH
LSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQ
TLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEA
FLLSNGFTVPPQLNSLEYAMEILNQLNVTKPITPSSESTPSILTCSETKT
RGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIY
INIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGV
YRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIW
VIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKY
WVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIK
RGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK*
Sequence Length:
590
Sequence Checksum:
f986e72c797d9ee19a7a5fc0e8f328e1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_010649, derives from mRNA, DCAR_010649. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1L5YKC7 ((ABC transporter G family member 4 {ECO:0000313|EMBL:APP91578.1}))
HSP 1 Score: 965.681 bits (2495), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 529/598 (88.46%), Query Frame = 0
Match: A0A1L5YKC7 ((ABC transporter G family member 4 {ECO:0000313|EMBL:APP91578.1}))
HSP 1 Score: 965.681 bits (2495), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 529/598 (88.46%), Query Frame = 0
Query: 1 MADPQSPQKPPPKTYQITASSISYSKSTT-------TFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPITPSS-ESTPSILTCSETKTRGK-IRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
M D S PP KTY+ITASSISY+K TT TF F+ CT TPP Y+L+DI LTAYPSQ+LAIVGPSGAGKSTLLDILAARTSPT+G+LLLNSSPLN SS RKLSAYVPQHDACLP LTV+ETFAFAASLL PK+S+I++IV SLL+ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS SAFNVMQTL+SIA SRHRT+ILSIHQPSFKILSTID++LLLSKG V+HHGTLSSLE FLLS+GFTVP QLNSLEYAMEIL+QL+ KP+TP S +P I S + G IRY+SSRLHE+ LYNRF KI+YRT+QLLL N L+ALGVGLVLGTIYINIGFDK G+EKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYLIANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTI L FFLFSGYFIS+D+MPKYW+FMH+FSMYKYALDA LINEYSCL+SRCL+W+ EENKTCM TGRDV+ K+GLHE QRWTNIY+LIGFF FYRVLC LVLIRRV R K
Sbjct: 1 MEDHSSLPPPPHKTYRITASSISYTKPTTNNYTIVPTFLFQPCTTTPPTYVLRDICLTAYPSQVLAIVGPSGAGKSTLLDILAARTSPTSGSLLLNSSPLNRSSLRKLSAYVPQHDACLPQLTVSETFAFAASLLVPKSSKIAIIVASLLSELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSNSAFNVMQTLQSIAQSRHRTVILSIHQPSFKILSTIDKVLLLSKGTVIHHGTLSSLETFLLSHGFTVPSQLNSLEYAMEILSQLHEHKPLTPPSLPLSPEIPEISPSNHSGSMIRYRSSRLHEVLALYNRFWKIVYRTRQLLLVNALEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSVSVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTIFLGAFFLFSGYFISKDSMPKYWLFMHFFSMYKYALDAFLINEYSCLVSRCLLWY-EENKTCMATGRDVLQKKGLHERQRWTNIYMLIGFFFFYRVLCFLVLIRRVRRSKN 597
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T6J9 ((ABC transporter G family member 8 {ECO:0000313|RefSeq:XP_011076083.1}))
HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 469/580 (80.86%), Postives = 529/580 (91.21%), Query Frame = 0
Match: A0A6I9T6J9 ((ABC transporter G family member 8 {ECO:0000313|RefSeq:XP_011076083.1}))
HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 469/580 (80.86%), Postives = 529/580 (91.21%), Query Frame = 0
Query: 13 KTYQITASSISYSKSTTTFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPI-TPSSESTP--SILTCSETKTRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
KTY+++A++ISY+KSTTT F+ C TPP YIL+DI+LTAYPSQILA+VGPSGAGKSTLLDILAART+PT+G L LNS+PL S FRKLSAYVPQHDACLPLLTVAETF F+ASLLNPK+S+IS +V+SLL ELRLTHL+ TRL GLSGGERRRVSIGL LLHDPAVL+LDEPTSGLDS SA NVMQTLRSI DSR RT++LSIHQP FKILST+D+ILLL+KG VVHHGTLSSL+AFLL NGFTVPPQLN+LEYAMEILNQL+ T+P TPS +P SI + S+TKT+ +RY+SSR HE+ LYNRF KIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDK+GIEKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYL+ANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSS+APN+IAGTSL+T+LLAGFFLFSGYFIS++++PK+W+FMHY SMYKYALDA+LINEYSCL+SRCLIWFDE+N TCM +GRDV+ KRGLHE QRWTNIYILIGFF+ YR+L L+VL+RRVSR KK
Sbjct: 15 KTYKLSAAAISYTKSTTTTLFKPCISTPPTYILKDISLTAYPSQILAVVGPSGAGKSTLLDILAARTAPTSGALNLNSAPLVPSVFRKLSAYVPQHDACLPLLTVAETFLFSASLLNPKSSDISTVVSSLLDELRLTHLADTRLAHGLSGGERRRVSIGLCLLHDPAVLILDEPTSGLDSRSALNVMQTLRSITDSRQRTVVLSIHQPGFKILSTVDRILLLAKGSVVHHGTLSSLQAFLLCNGFTVPPQLNALEYAMEILNQLHETEPTSTPSLPPSPENSISSISDTKTKDSVRYRSSRFHEVITLYNRFWKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKSGIEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLMANTLVFLPYLLAIAIIYSISVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSIAPNFIAGTSLLTVLLAGFFLFSGYFISKESLPKFWLFMHYLSMYKYALDAMLINEYSCLVSRCLIWFDEKNTTCMVSGRDVLEKRGLHERQRWTNIYILIGFFVIYRILWLMVLMRRVSRSKK 594
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BY95 ((Putative ABC transporter G family member 8-like {ECO:0000313|EMBL:MPA73952.1}) (Fragment))
HSP 1 Score: 960.288 bits (2481), Expect = 0.000e+0
Identity = 491/579 (84.80%), Postives = 528/579 (91.19%), Query Frame = 0
Match: A0A5B7BY95 ((Putative ABC transporter G family member 8-like {ECO:0000313|EMBL:MPA73952.1}) (Fragment))
HSP 1 Score: 960.288 bits (2481), Expect = 0.000e+0
Identity = 491/579 (84.80%), Postives = 528/579 (91.19%), Query Frame = 0
Query: 13 KTYQITASSISYSKSTTT--FSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPITPSSESTPSILTCSETKTRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
KTY+ITASSISY+KS+TT F F+ CT PP YIL++++L+A PS+ILAIVGPSGAGKSTLLDILAARTSPT+GTLLLNSSPLN SSFRKLSAYVPQHDACLPLLTVAETFAFAA LLNPK+S+I+ V SLL ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPA+LLLDEPTSGLDS SAFNVMQTLRSI DS HRT++LSIHQPSFKILSTID+ILLLSKG VVHHGTLSSLEAFLLSNGFTVPPQLN+LEY+MEILNQL+ +KPITP E + IRYKSSRLHE+ LYNRF KIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDK GIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYR+SSYLIANTLVFLPYLL IAILYS SVYFLVGLCATWQAFAYFVLVIW+IVLMANSFVLFLSS+APNYIAGTSLVTILL GFFLFSGYFISQD++PKYW+FMH+ SMYKYALDALLINEYSCL+SRCLIW+D ENKTCM TGRDV+ KRGLHE QRWTNIYILIGFF+FYRVLCL+VLIRRVSR KK
Sbjct: 60 KTYKITASSISYTKSSTTTTFLFKPCTTAPPTYILREVSLSASPSEILAIVGPSGAGKSTLLDILAARTSPTSGTLLLNSSPLNPSSFRKLSAYVPQHDACLPLLTVAETFAFAACLLNPKSSQIATTVASLLAELRLTHLAHTRLTSGLSGGERRRVSIGLSLLHDPAILLLDEPTSGLDSASAFNVMQTLRSITDSGHRTVLLSIHQPSFKILSTIDRILLLSKGSVVHHGTLSSLEAFLLSNGFTVPPQLNALEYSMEILNQLHNSKPITPPPSVLLPPSPTREVR----IRYKSSRLHEVVTLYNRFWKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKKGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRLSSYLIANTLVFLPYLLAIAILYSVSVYFLVGLCATWQAFAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSLVTILLGGFFLFSGYFISQDSLPKYWLFMHFLSMYKYALDALLINEYSCLVSRCLIWYD-ENKTCMVTGRDVLQKRGLHEGQRWTNIYILIGFFVFYRVLCLMVLIRRVSRSKK 633
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H6M1 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 527/598 (88.13%), Query Frame = 0
Match: F6H6M1 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 527/598 (88.13%), Query Frame = 0
Query: 1 MADPQSPQKPPPKTYQITASSISYSKSTT-------TFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTK-PITPSSESTPSILTCSETKTRGK-IRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
M D S PP KTY+ITASSISY+K TT TF F+ CT TPP YIL+DI LTAYPSQ+LAIVGPSGAGKSTLLDILAARTSPT+G+LLLNSSPLN SSFRKLSAYVPQHDACLP LTV+ETFAFAASLL PK+S+I++IV SLL+ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS SAFNVMQTL+SIA SRHRT+ILSIHQPSFKILSTID++LLLSKG V+HHGTLSSLE FLLS+GFTVP QLNSLEYAMEIL+QL+ K PS +P I S + G IRY+SSRLHE+ LYNRF KI+YRT+QLLL N L+ALGVGLVLGTIYINIGFDK G+EKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYLIANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTI L FFLFSGYFIS+D+MPKYW+FMH+FSMYKYALDA LINEYSCL+SRCL+W+ EENKTCM TGRDV+ K+GLHE QRWTNIY+LIGFF FYRVLC LVLIRRV R K
Sbjct: 1 MEDHSSLPPPPHKTYRITASSISYTKPTTNNYTIVPTFLFQPCTTTPPTYILRDICLTAYPSQVLAIVGPSGAGKSTLLDILAARTSPTSGSLLLNSSPLNRSSFRKLSAYVPQHDACLPQLTVSETFAFAASLLVPKSSKIAIIVASLLSELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSNSAFNVMQTLQSIAQSRHRTVILSIHQPSFKILSTIDKVLLLSKGTVIHHGTLSSLETFLLSHGFTVPSQLNSLEYAMEILSQLHEHKPLTPPSLPPSPEIPEISPSNHSGSMIRYRSSRLHEVLALYNRFWKIVYRTRQLLLVNALEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSVSVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTIFLGAFFLFSGYFISKDSMPKYWLFMHFFSMYKYALDAFLINEYSCLVSRCLLWY-EENKTCMATGRDVLQKKGLHERQRWTNIYMLIGFFFFYRVLCFLVLIRRVRRSKN 597
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1L5YKE7 ((ABC transporter G family member 4 {ECO:0000313|EMBL:APP91591.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 528/598 (88.29%), Query Frame = 0
Match: A0A1L5YKE7 ((ABC transporter G family member 4 {ECO:0000313|EMBL:APP91591.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 528/598 (88.29%), Query Frame = 0
Query: 1 MADPQSPQKPPPKTYQITASSISYSKSTT-------TFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTK-PITPSSESTPSILTCSETKTRGK-IRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
M D S PP KTY+ITASSISY+K TT TF F+ CT TPP YIL+DI LTAYPSQ+LAIVGPSGAGKSTLLDILAARTSPT+G+LLLNSSPLN SSFRKLSAYVPQHDACLP LTV+ETFAFAASLL PK+S+I++IV SLL+ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS SAFNVMQTL+SIA SRHRT+I SIHQPSFKILSTID++LLLSKG V+HHGTLSSLE FLLS+G+TVPPQLNSLEYAMEIL+QL+ K PS +P I S + G IRY+SSRLHE+ LYNRF KI+YRT+QLLL NTL+ALGVGLVLGTIYINIGFDK G+EKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYLIANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTI L FFLFSGYFIS+D+MPKYW+FMH+FSMYKYALDA LINEYSCL+SRCL+W+ EENKTCM TGRDV+ K+GLHE QRWTNIY+LIGFF FYRVLC LVLIRRV R K
Sbjct: 1 MEDHSSLPPPPHKTYRITASSISYTKPTTNNYTIVPTFLFQPCTTTPPTYILRDICLTAYPSQVLAIVGPSGAGKSTLLDILAARTSPTSGSLLLNSSPLNRSSFRKLSAYVPQHDACLPQLTVSETFAFAASLLVPKSSKIAIIVASLLSELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSNSAFNVMQTLQSIAQSRHRTVISSIHQPSFKILSTIDKVLLLSKGTVIHHGTLSSLETFLLSHGYTVPPQLNSLEYAMEILSQLHEHKPLTPPSLPPSPEIPEISPSNHSGSMIRYRSSRLHEVLALYNRFWKIVYRTRQLLLVNTLEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSVSVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTIFLGAFFLFSGYFISKDSMPKYWLFMHFFSMYKYALDAFLINEYSCLVSRCLLWY-EENKTCMATGRDVLQKKGLHERQRWTNIYMLIGFFFFYRVLCFLVLIRRVRRSKN 597
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438ICZ8 ((ABC transporter G family member 8 {ECO:0000313|EMBL:RVW94581.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 527/598 (88.13%), Query Frame = 0
Match: A0A438ICZ8 ((ABC transporter G family member 8 {ECO:0000313|EMBL:RVW94581.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 484/598 (80.94%), Postives = 527/598 (88.13%), Query Frame = 0
Query: 1 MADPQSPQKPPPKTYQITASSISYSKSTT-------TFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTK-PITPSSESTPSILTCSETKTRGK-IRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
M D S PP KTY+ITASSISY+K TT TF F+ CT TPP YIL+DI LTAYPSQ+LAIVGPSGAGKSTLLDILAARTSPT+G+LLLNSSPLN SSFRKLSAYVPQHDACLP LTV+ETFAFAASLL PK+S+I++IV SLL+ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS SAFNVMQTL+SIA SRHRT+ILSIHQPSFKILSTID++LLLSKG V+HHGTLSSLE FLLS+GFTVP QLNSLEYAMEIL+QL+ K PS +P I S + G IRY+SSRLHE+ LYNRF KI+YRT+QLLL N L+ALGVGLVLGTIYINIGFDK G+EKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYLIANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTI L FFLFSGYFIS+D+MPKYW+FMH+FSMYKYALDA LINEYSCL+SRCL+W+ EENKTCM TGRDV+ K+GLHE QRWTNIY+LIGFF FYRVLC LVLIRRV R K
Sbjct: 1 MEDHSSLPPPPHKTYRITASSISYTKPTTNNYTIVPTFLFQPCTTTPPTYILRDICLTAYPSQVLAIVGPSGAGKSTLLDILAARTSPTSGSLLLNSSPLNRSSFRKLSAYVPQHDACLPQLTVSETFAFAASLLVPKSSKIAIIVASLLSELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSNSAFNVMQTLQSIAQSRHRTVILSIHQPSFKILSTIDKVLLLSKGTVIHHGTLSSLETFLLSHGFTVPSQLNSLEYAMEILSQLHEHKPLTPPSLPPSPEIPEISPSNHSGSMIRYRSSRLHEVLALYNRFWKIVYRTRQLLLVNALEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSVSVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTIFLGAFFLFSGYFISKDSMPKYWLFMHFFSMYKYALDAFLINEYSCLVSRCLLWY-EENKTCMATGRDVLQKKGLHERQRWTNIYMLIGFFFFYRVLCFLVLIRRVRRSKN 597
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D2L0 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0
Identity = 479/596 (80.37%), Postives = 530/596 (88.93%), Query Frame = 0
Match: A0A4S4D2L0 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0
Identity = 479/596 (80.37%), Postives = 530/596 (88.93%), Query Frame = 0
Query: 5 QSPQKPPP--KTYQITASSISYSKS-----TTTFSFRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPITPSSESTPSILTCSETK----TRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
+ P PP KTYQITASSISY+KS ++TF F+ CT TPP YIL+D++L A PSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPL S FRK SAYVPQHDACLPLLTV+ETFAFAA LLNPKT ++S IV SLL+ELRLTHL+HTRLG GLSGGERRR+SIGLSLL+DPAVLLLDEPTSGLDS+SAFNVMQTLRS A+S HRT++LSIHQPSFKILSTID+ILLLSKG VVHHGTLSSLEAFLLS GFTVPPQLN+LEY MEILNQL+ +KPI P +S PS+ S T + +I+YKSSR+HEI LYNRF KIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDK GIEKRLGLFAFTLTFLLSSTTETLPIFI+ERP++LRETSSGVYRISSYLIANTLVF+PYLL IA++YS SVYFLVGLC TWQAFAYFV+VIWVIVLMANSFVLFLSS+APN+IAGTSL+TILL FFLFSGYFIS D++PKYW+FMHY SMYKYALDALLINEYSCL+S+CLIW+ EENKTCM TG DV+ +RGL+E QRWTN YI+IGFF+FYRVL L+VLIRRVSR KK
Sbjct: 2 EEPSSPPQNLKTYQITASSISYTKSISTTISSTFLFKPCT-TPPIYILRDVSLIANPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLIPSLFRKFSAYVPQHDACLPLLTVSETFAFAACLLNPKTPDVSSIVASLLSELRLTHLAHTRLGHGLSGGERRRISIGLSLLNDPAVLLLDEPTSGLDSSSAFNVMQTLRSTAESHHRTVVLSIHQPSFKILSTIDRILLLSKGTVVHHGTLSSLEAFLLSKGFTVPPQLNALEYTMEILNQLSKSKPIGP--QSLPSLPNDSTTSLADSDKRQIKYKSSRVHEIVTLYNRFWKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKKGIEKRLGLFAFTLTFLLSSTTETLPIFISERPVLLRETSSGVYRISSYLIANTLVFMPYLLAIAVVYSVSVYFLVGLCCTWQAFAYFVMVIWVIVLMANSFVLFLSSLAPNFIAGTSLLTILLGCFFLFSGYFISTDSLPKYWLFMHYMSMYKYALDALLINEYSCLVSKCLIWY-EENKTCMVTGSDVLQRRGLNERQRWTNFYIMIGFFVFYRVLWLMVLIRRVSRSKK 593
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HVW9 ((Transporter, ABC superfamily (Breast cancer resistance protein) {ECO:0000313|EMBL:PIN21665.1}) (3.6.3.19 {ECO:0000313|EMBL:PIN21665.1}))
HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 480/592 (81.08%), Postives = 532/592 (89.86%), Query Frame = 0
Match: A0A2G9HVW9 ((Transporter, ABC superfamily (Breast cancer resistance protein) {ECO:0000313|EMBL:PIN21665.1}) (3.6.3.19 {ECO:0000313|EMBL:PIN21665.1}))
HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 480/592 (81.08%), Postives = 532/592 (89.86%), Query Frame = 0
Query: 13 KTYQITASSISYSKSTTTFS---FRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPIT------------PSSESTPSILTCSETKTRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
KTY++TASSISY+KSTTT + F+ C TPP YIL+D++LTA+PS+ILAIVGPSGAGKSTLLDILAART+ T+G LLLNS P N S FRKLSAYVPQHDACLPLLTV+ETFAF+A LLNPK+S IS IV+SLL ELRLTHL+HTRL GLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDS SA NVMQTL+SIA SRHRT+ILSIHQPSFKILSTID+ILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLN+LEYAMEILNQL T+P + P+ ST S+ SETK + +IRY+SSR HEI LYNRF IIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDK+GIEKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYL+ANTLVFLPYLL +AI+YS SVYFLVGLC TWQAF+YFVLVIW+IVLMANSFVLFLSS+APN+IAGTSLVT+LLAGFFLFSGYFIS++++PK+W+FMHYFSMYKYALDALLINEYSCL+SRCLIWFDE+NKTCM +G DV+ KRGLHE QRWTN+YILIGFF+ YRVLCL+VLIRRVSR KK
Sbjct: 21 KTYKLTASSISYTKSTTTTATIFFKPCVSTPPTYILKDVSLTAHPSEILAIVGPSGAGKSTLLDILAARTAATSGALLLNSCPFNPSVFRKLSAYVPQHDACLPLLTVSETFAFSARLLNPKSSNISTIVSSLLEELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSGSALNVMQTLKSIATSRHRTVILSIHQPSFKILSTIDRILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNALEYAMEILNQLQETEPTSSPQEFGSLPPPPPAQNSTSSL---SETKPKDEIRYRSSRFHEIITLYNRFWIIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKSGIEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLMANTLVFLPYLLAVAIIYSVSVYFLVGLCGTWQAFSYFVLVIWIIVLMANSFVLFLSSIAPNFIAGTSLVTVLLAGFFLFSGYFISKESLPKFWLFMHYFSMYKYALDALLINEYSCLVSRCLIWFDEKNKTCMVSGSDVLEKRGLHERQRWTNVYILIGFFVLYRVLCLMVLIRRVSRSKK 609
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9G1E8 ((Transporter, ABC superfamily (Breast cancer resistance protein) {ECO:0000313|EMBL:PIM98954.1}) (3.6.3.19 {ECO:0000313|EMBL:PIM98954.1}))
HSP 1 Score: 946.036 bits (2444), Expect = 0.000e+0
Identity = 479/592 (80.91%), Postives = 531/592 (89.70%), Query Frame = 0
Match: A0A2G9G1E8 ((Transporter, ABC superfamily (Breast cancer resistance protein) {ECO:0000313|EMBL:PIM98954.1}) (3.6.3.19 {ECO:0000313|EMBL:PIM98954.1}))
HSP 1 Score: 946.036 bits (2444), Expect = 0.000e+0
Identity = 479/592 (80.91%), Postives = 531/592 (89.70%), Query Frame = 0
Query: 13 KTYQITASSISYSKSTTTFS---FRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPIT------------PSSESTPSILTCSETKTRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
KTY++TASSISY+KSTTT + F+ C TPP YIL+D++LTA+PS+ILA+VGPSGAGKSTLLDILAART+ T+G LLLNS P N S FRKLSAYVPQHDACLPLLTV+ETFAF+A LLNPK+S IS IV+SLL ELRLTHL+HTRL GLSGGERRRVS+GLSLLHDPAVLLLDEPTSGLDS SA NVMQTL+SIA SRHRT+ILSIHQPSFKILSTID+ILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLN+LEYAMEILNQL T+P + PS ST S+ SETK + IRY+SSR HEI LYNRF IIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDK+GIEKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETS GVYR+SSYL+ANTLVFLPYLL +AI+YS SVYFLVGLC TWQAF+YFVLVIW+IVLMANSFVLFLSS+APN+IAGTSLVT+LLAGFFLFSGYFIS++++PK+W+FMHYFSMYKYALDALLINEYSCL+SRCLIWFDE+NKTCM +GRDV+ KRGLHE QRWTN+YILIGFF+ YRVLCL+VLIRRVSR KK
Sbjct: 21 KTYKLTASSISYTKSTTTTATIFFKPCVSTPPTYILKDVSLTAHPSEILAVVGPSGAGKSTLLDILAARTATTSGALLLNSCPFNPSVFRKLSAYVPQHDACLPLLTVSETFAFSARLLNPKSSNISTIVSSLLEELRLTHLAHTRLAHGLSGGERRRVSLGLSLLHDPAVLLLDEPTSGLDSGSALNVMQTLKSIATSRHRTVILSIHQPSFKILSTIDRILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNALEYAMEILNQLQETEPTSSPQEFGSLPPPPPSQNSTSSL---SETKPKDVIRYRSSRFHEIITLYNRFWIIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKSGIEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSCGVYRLSSYLMANTLVFLPYLLAVAIIYSVSVYFLVGLCGTWQAFSYFVLVIWIIVLMANSFVLFLSSIAPNFIAGTSLVTVLLAGFFLFSGYFISKESLPKFWLFMHYFSMYKYALDALLINEYSCLVSRCLIWFDEKNKTCMVSGRDVLEKRGLHEIQRWTNVYILIGFFVLYRVLCLMVLIRRVSRSKK 609
BLAST of DCAR_010649 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W433 ((ABC transporter G family member 8-like {ECO:0000313|RefSeq:XP_027110184.1}))
HSP 1 Score: 944.495 bits (2440), Expect = 0.000e+0
Identity = 467/587 (79.56%), Postives = 515/587 (87.73%), Query Frame = 0
Match: A0A6P6W433 ((ABC transporter G family member 8-like {ECO:0000313|RefSeq:XP_027110184.1}))
HSP 1 Score: 944.495 bits (2440), Expect = 0.000e+0
Identity = 467/587 (79.56%), Postives = 515/587 (87.73%), Query Frame = 0
Query: 10 PPPKTYQITASSISYSKSTTTFS-------FRTCTPTPPNYILQDITLTAYPSQILAIVGPSGAGKSTLLDILAARTSPTNGTLLLNSSPLNHSSFRKLSAYVPQHDACLPLLTVAETFAFAASLLNPKTSEISVIVNSLLTELRLTHLSHTRLGEGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQTLRSIADSRHRTIILSIHQPSFKILSTIDQILLLSKGKVVHHGTLSSLEAFLLSNGFTVPPQLNSLEYAMEILNQLNVTKPITPSSESTPSILTCSETKTRGKIRYKSSRLHEIAILYNRFLKIIYRTKQLLLTNTLQALGVGLVLGTIYINIGFDKTGIEKRLGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRISSYLIANTLVFLPYLLIIAILYSASVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTILLAGFFLFSGYFISQDNMPKYWVFMHYFSMYKYALDALLINEYSCLLSRCLIWFDEENKTCMFTGRDVMIKRGLHENQRWTNIYILIGFFIFYRVLCLLVLIRRVSRCKK 589
PP +TY++TASSISY+KST + + F+ C +PP YIL+D++L+AYPSQILAIVGPSGAGKSTLLDILAART PT GTLLLNS PLN S++RKLSAYVPQHDACLP LTV+ETFAFAA LLNP T EI IV SL+ ELRLTHL+HTRL GLSGGERRRVSIGL LLHDPAVLLLDEPTSGLDS SAF VMQTLRSI DSRHRT+ILSIHQPSFKILSTID ILLLSKG VVH GTLSSLEAFLLSNGFTVPPQLN+LEYAMEIL+QL+ K P+ P + +RY+SSR+HEI +LY RF KI++RTKQLL+TNT QALGVGLVLGTIY+NIGFDK GIEKRLGLFAFTLTFLLSSTTETLPIFINERPI+LRETSSGVYR+SSYL ANTLVFLPYLL IAI+YS SVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSV PNY+AGTSLVT+LLAGFFLFSGYFIS+D++PK+W+ MHYFSMYKYALDALLINEYSCL+SRCLIW+D ENKTCM TGRDV+ KRGLHE QRWTN+YILIGFF FYR+LCL+VL+RRVSR KK
Sbjct: 10 PPLRTYKLTASSISYAKSTASSNIPPAAVLFKPCVSSPPTYILRDVSLSAYPSQILAIVGPSGAGKSTLLDILAARTCPTGGTLLLNSKPLNPSAYRKLSAYVPQHDACLPELTVSETFAFAARLLNPPTCEIPRIVESLMAELRLTHLAHTRLAHGLSGGERRRVSIGLCLLHDPAVLLLDEPTSGLDSNSAFKVMQTLRSITDSRHRTVILSIHQPSFKILSTIDNILLLSKGTVVHQGTLSSLEAFLLSNGFTVPPQLNALEYAMEILHQLH--KNTKPADTDQPMLPPSPSNYNVEVVRYRSSRVHEIVVLYQRFWKIVFRTKQLLVTNTFQALGVGLVLGTIYMNIGFDKAGIEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLAANTLVFLPYLLAIAIVYSISVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVTPNYLAGTSLVTVLLAGFFLFSGYFISKDSLPKFWLGMHYFSMYKYALDALLINEYSCLISRCLIWYD-ENKTCMVTGRDVLDKRGLHERQRWTNVYILIGFFAFYRLLCLIVLLRRVSRSKK 593
| Match Name | Stats | Description |
|---|---|---|
| A0A1L5YKC7 | E-Value: 0.000e+0, PID: 80.94 | (ABC transporter G family member 4 {ECO:0000313|EM... [more] |
| A0A6I9T6J9 | E-Value: 0.000e+0, PID: 80.86 | (ABC transporter G family member 8 {ECO:0000313|Re... [more] |
| A0A5B7BY95 | E-Value: 0.000e+0, PID: 84.80 | (Putative ABC transporter G family member 8-like {... [more] |
| F6H6M1 | E-Value: 0.000e+0, PID: 80.94 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A1L5YKE7 | E-Value: 0.000e+0, PID: 80.94 | (ABC transporter G family member 4 {ECO:0000313|EM... [more] |
| A0A438ICZ8 | E-Value: 0.000e+0, PID: 80.94 | (ABC transporter G family member 8 {ECO:0000313|EM... [more] |
| A0A4S4D2L0 | E-Value: 0.000e+0, PID: 80.37 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A2G9HVW9 | E-Value: 0.000e+0, PID: 81.08 | (Transporter, ABC superfamily (Breast cancer resis... [more] |
| A0A2G9G1E8 | E-Value: 0.000e+0, PID: 80.91 | (Transporter, ABC superfamily (Breast cancer resis... [more] |
| A0A6P6W433 | E-Value: 0.000e+0, PID: 79.56 | (ABC transporter G family member 8-like {ECO:00003... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |