MAESSWVDDSNAAQVHRNCRNVFHILAQRETTPRTKCLARKHWGEAFKSD
VESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAF
SPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVL
ASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY
LWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSA
VARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARD
DSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTA
LHSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGEANLSNVDPYGA
NSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWELPFLQGW
IMGQRQAVMHPELPHVGRRQEGSSAYPRSHVEEDHHSRSSLNNGIGATSF
SLISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLT
IPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAA
TSPTRHPISARQIMYELRIYSLEFGSVLVSRAIRAAHCLTSIQFSPTSEH
ILLAYGRGLAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVEVEQLF
*
| Relationships |
|---|
| The polypeptide, DCAR_012613, derives from mRNA, DCAR_012613. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7CDS5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA79030.1}))
HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0
Identity = 424/725 (58.48%), Postives = 491/725 (67.72%), Query Frame = 0
Query: 1 MAESSWVDDSNAA-------QVHRNCRNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTALHSNVQSTAADTLPSYNP----SRVPNLVHDGSNNIADVQLGE----ANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWE-LPFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY------------PRSHVE-----------------------EDHHSRSSLNNGI--------------GATSFSLISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 657
M+ W+DD+N Q+H + NVF +L QRE +PRT+C R WGEA K + ES P E ++DARR LFSW+EAESLQHLSAKYC L P PRSTIAAAFS DGKT+ASTHGDHTVK+ID +TG CL+VL GHRRTPWVVRFHP HPE+LASGSLDHEVRLW+ANTSECIGSRDFYRPIASIAFHAEGE+LAVASGHKLY+W YNR GE SSP IVL+TRRSLRAVHFHPHGAP LLTAEVNDLDSSDS++AR TS G L Y P ++++ANV SD SL AE PL+S P ++P AR+DS TD QLGN PV S++Q E SA VQF++D NA+ DH P E S A+ S+ +T DT +Y P S V + D N +VQL E + SN+D G + A P+ Q + RP R+P WE LPF+QGW+MGQ QA M P LP G E SS Y P + E +H SR+ L + G+ S +I+RIQSELA S++ATAATELPCTVKLRIW H +KNPC+ L+ E C L IPHAVLCSEMG HFSPCGRFLAACVACVLP+ E+DPGL TQ + + GAATSPTRHPISA Q+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR
Sbjct: 1 MSGRLWLDDANTVPFSSSHRQIHHSVGNVFCLLVQREISPRTRCSPRWKWGEASKRNAESSSVPGREAVRDARRGLFSWIEAESLQHLSAKYCPLEPPPRSTIAAAFSSDGKTLASTHGDHTVKIIDYQTGGCLKVLTGHRRTPWVVRFHPEHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGEILAVASGHKLYIWCYNRRGETSSPDIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMARATSPGCLRY-PSAVYVANVRCSDRPSLVAEQPLISLPFLHLPSFARNDSRTDPQLGNRPVGLSNLQVESSASVQFQVDANAMEQHDHMVFPMEMSPAIPSDSYATTEDTSTNYYPVGMQSSVCDTTMDAMEN-TEVQLEEGYQRSGSSNLDTSGGANGALPFISQSD-----GILRPGRLP--------------DWELLPFMQGWLMGQSQAGMPPILPLNGGTHEHSSGYLGLGSAILASDLPTCNAEAPMTHPAMTSCITRSVVSKRSGLRNHSSRTHLISASKFGQGDASINTPYDGSDSLPIINRIQSELATSLAATAATELPCTVKLRIWPHDIKNPCASLNAESCRLIIPHAVLCSEMGTHFSPCGRFLAACVACVLPQMESDPGLPTQLHQDVMGAATSPTRHPISACQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 704
HSP 2 Score: 43.8986 bits (102), Expect = 1.183e-1
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 0
Query: 656 GRGLAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVEVE 697
G GL YGTKEG+LRVL+ D N P+ I E+MVEV+
Sbjct: 758 GGGLVYGTKEGKLRVLQYDGAQG-VNCTGPNFIPAENMVEVQ 798
Match: A0A2R6P6X6 ((Activating molecule in BECN1-regulated autophagy protein {ECO:0000313|EMBL:PSR86397.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 414/694 (59.65%), Postives = 482/694 (69.45%), Query Frame = 0
Query: 10 SNAAQVHRNCR-NVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTALHSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGEANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRT-QLLPSTNPTSWELPFLQGWIMGQRQAVMHPELPHVGRR-------------------QEGSSAYPRSHVEEDHHSRSSLNNGI----------------------GATSFSLISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 657
S+ Q+HR+ R NVF +LA+RE +PRTKCL R W +A K D E + E DA+R LFSWVEAESLQ+LSAKYC LVP PRSTIAAAFSPDGKT+ASTHGDHTVK+IDC+TG+CL+VL+GHRRTPWVVRFHP HPE+LASGSLDHEVRLWNA+TSECIGSRDFYRPIASIAFHAEGE+LAVASGHKLY+W+YNR GE SSPTIVLKTRRSLRAVHFHPHGAP LLTAEVNDLDSSDS++ R TS SL YPPP++++AN+ SD +S+A +LPLMS P Y+P R+DS D QLG PV SS + S+ +Q + NA H++H E S A+ SN + +TL +Y P V + V G N+ ++ E L V+ Y Q P+ G +P RV +LR QLL S +P WELPFLQGW+MGQ Q+ M P LP G G P + + + S +GI G S L SRIQSELAAS++ATAA ELPCTVKLRIW H +K+PC LD ERC LTIPHAVLCSEMGAHFSPCGRFLAACVACVLP+ E DP L Q + + +GA TSPTRHPI+ARQ+ YELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR
Sbjct: 17 SSQPQIHRSSRRNVFSLLARREVSPRTKCLPRWQWRDASKRDAEFSFVSQSEAAIDAKRGLFSWVEAESLQNLSAKYCPLVPPPRSTIAAAFSPDGKTLASTHGDHTVKVIDCQTGSCLKVLSGHRRTPWVVRFHPEHPEILASGSLDHEVRLWNAHTSECIGSRDFYRPIASIAFHAEGEVLAVASGHKLYIWHYNRRGETSSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPRSLRYPPPAVYVANIRSSDRLSMATDLPLMSLPFLYLPSFTREDSRIDPQLGIRPVASSHVDVGSSSSMQIQETANAQEHYNH----VEMSPAIDSNSHAAVDETLTNYCPIGVHDRV--GDINMDAMETTEVPL--VEGY-----RQSLIPEAGRVLGSIGFQPDRVSIELRQHQLLHSRDPPCWELPFLQGWLMGQSQSGMPPVLPVDGVHPSVYLGSGSAMLISDLPACSGGIPMVPLAMPSSVNRTVVSRASGIRDHSLHTPLVSASDPRQGAAHGGNDSLPLFSRIQSELAASLAATAAAELPCTVKLRIWSHDIKSPCDPLDAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPQMECDPSFLAQLHQDVSGAGTSPTRHPIAARQVTYELRIYSLEKATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 697
Match: A0A834ZBB4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8402008.1}))
HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 426/796 (53.52%), Postives = 502/796 (63.07%), Query Frame = 0
Query: 21 NVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQ--AEFSAPVQFEIDLNAIGHFDHRALPAETSTALHSNVQSTAADTLPSYNPSRVPNLVHDGSNNI---ADVQLGEANL----SNVDPYGANSSAQPYTPQHAVESGFSVTRPI---RVPADLRT--QLLPSTNPTSWELPFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY--------------------------PRS-------------HVEEDHHSRSSLNNGIGATSFSL----------ISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEH----------------------------ILLAY---------------------------GRGLAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVE 695
NVF +LA+RE +PRTK +++ WGEA + ++ S PK E + DA+ L SWVEAESL+HLSAKYC L+P PRSTIAAAFSPDG+T+ASTHGDHTVK+IDC+TG CL+VL+GHRRTPWVVRFHP+HPE+LASGSLDHEVRLW+A T+ECIGSRDFYRPIASIAFHA+GELLAVASGHKLY+W+Y R GE SSPTIVLKTRRSLRAVHFHPH AP LLTAEVNDLDS DS + TS G L YPPP++FLANVH SD SLAAELPL+S P + P ARDD T LQ N V S S Q E SA VQ + D + G +D+ P E S AL S+ DT+ ++ S + N V D + +I A+VQ N S +D +S P Q SG PI R+ + QL P ++PT WELPFLQGW+MGQ QA + P LP G QE +S + P S H H ++ +G GA ++ +SR Q ELA S++A AA ELPCTVKLRIW H +K+PC+ LD ERC L+IPHAVLCSEMGAHFSPCGRFLAACVAC+LP E+DPGL TQ H+ TGAATSPTRHPISA Q+MYELRIYSLE FGSVL SRAIRAAHCLTSIQFSPTSEH IL Y G GL YGTKEG+LR+L+ D H +NL RP+ E+M+E
Sbjct: 38 NVFRLLARREISPRTKHSSKRLWGEASEWNINSVC-PKSEAVGDAKHGLVSWVEAESLRHLSAKYCPLMPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGRCLKVLSGHRRTPWVVRFHPVHPEILASGSLDHEVRLWDAYTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYKRRGETSSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSPDSLMTLATSPGYLRYPPPAVFLANVHSSDRPSLAAELPLISFPFLFWPSFARDDGATSLQHANRSVGSGSAQQRVESSASVQLQTDPSIGGQYDYLVSPMEMSPALPSSSYPVPEDTVTNFLSSEMENAVSDSAMDIMETAEVQPEGGNQQRSSSILDTLDGANSVPPLILQ---SSGVPDRTPIPQYRLGVEFGQLRQLFPFSDPTCWELPFLQGWLMGQSQAGLQPMLPPNGGIQENTSGFRGMRSDILTSDMSTRNVEVPVVSAVMPTSVGQSRVTGRSGLRHRSSRSHLMTTAGSGEGAAFTNIAHDESEPQPVVSRTQPELATSLAAAAAAELPCTVKLRIWSHDIKDPCATLDAERCRLSIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMESDPGLQTQAQHDITGAATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSIVIDGETSVPIYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQHDGSHG-RNLTRPNFFLEENMLE 828
Match: F6HZS8 ((Uncharacterized protein {ECO:0000313|EMBL:CCB60194.1}))
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 398/698 (57.02%), Postives = 479/698 (68.62%), Query Frame = 0
Query: 20 RNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTALHS----NVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGEANL----SNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWELPFLQGWIMGQRQAVMHP---------------------------------------------ELPHVGRRQEGSSAYPRSH---VEEDHHSRSSLNNG-IGATSFSLISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 657
RNV +LAQRE PR+K ++ WG + + + ES+ PK E +DARR L SWVEA+SLQHLSA+YC L+P PRSTIAAAFSPDGKT+ASTHGDHTVK+IDC TG+CL+VL GHRRTPWVVRFHP+HPE+LASGSLDHEVR+W+ANT+ECIGSRDFYRPIASIAFHA+GELLAVASGHKL++W+Y+R GE SSPTI+LKTRRSLRAVHFHPHGAP+LLTAEVNDLDSSDS++ R TS G L+YPPP++FLAN+H SD + LA+EL L S P S++P ARDDS DL + P S+ +Q S VQF+ D NA G +D+ P ETS L S + + T + +P+ + +P+ D ++ ++Q E N +N+D + +SA P H + P + Q LP P WELPFLQGW+MGQ QA + P LP V R + RSH V E +S+N G+ + ++SRIQSELAAS++A AA ELPCTVKLRIW H LKNP +VL+ E+CLL IPHAVLCSEMGAH SPCGRFLAACVACVLP EADPGL TQ + GA+TSPTRHP+SA +MYELRIYSLE FG+VLVSRAIRAAHCLTSIQFSPTSEHILLAYGR
Sbjct: 29 RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQHLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWVVRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKLFVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGYLHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQMGSSGSVQFQADANAAGQYDYMVFPMETSPVLPSCSNPSTEGTQINCVPNGMENGIPDPKMDAMDS-TEMQPVEQNQHRSSANLDTFSGANSASRGVPGHI------SSLPESIEFGHLHQFLPCRGPKYWELPFLQGWLMGQSQAGVSPMLSLNGASHEHSSQNLGMGSAILNPDLSTSNIEVPVISPAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIMSRIQSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAHLSPCGRFLAACVACVLPHLEADPGLQTQV-QDAIGASTSPTRHPVSAHHVMYELRIYSLEEATFGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 718
Match: A0A5C7I4X3 ((Uncharacterized protein {ECO:0000313|EMBL:TXG63919.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 405/692 (58.53%), Postives = 470/692 (67.92%), Query Frame = 0
Query: 20 RNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHK-LYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTALHSNVQSTAA-DTLP-----SYNPSRVPNLVHDGSNNIADVQLGEANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWELPFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY---------------------------------PRSHVEEDHHSRSSL-NNGIGATSFS----------LISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 657
RNV H+LAQRE +PRT+ + ++ WGEA +SD P ++ +DARR L SWVEAESL+HLSAKYC LVP PRSTIAAAFSPDG+T+ASTHGDHTVK+IDC+TGNCL+VL GHRRTPWVVRFHPL PE+LASGSLDHEVRLW+ANTSECIGSRDFYRPIASIAFHAEGELLAVASGHK LY+W+YN G+ SSP+IVLKTRRSLRAVHFHPH AP LLTAEVND+DSSDS++AR TS G L YPPP++F+ N +D SLAAELPLMS P +VP DDS DL N PV SS+++ E +A QF+ + N ++ P ET + S A ++ P + + SRV + D Q A SNV+ G P V+RP Q LP +PT WELPFLQGW+MGQ QA +H LP G ++ S+ + RS + HSR S+ +G A S S +ISRIQSELA S++A AA ELPCTVKLR+W H +KNPC+ L+ ERC LTIPHAVLCSEMGAHFSPCGRFLAACVACVLP +EAD GL T H TGAATSPTRHPISA Q+MYELRIYSLE FGSVL SRAIRAAHCLTSIQFSPTSEHILLAYGR
Sbjct: 498 RNVSHLLAQREISPRTRTVQKRKWGEASRSDA---CRPSIKSARDARRGLISWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLTGHRRTPWVVRFHPLRPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKVLYIWHYNNRGDASSPSIVLKTRRSLRAVHFHPHAAPFLLTAEVNDIDSSDSSMARATSQGYLRYPPPAVFVTNAQSNDRTSLAAELPLMSLPFLFVPSFPMDDSREDLHHANRPVGSSNMEVESAASTQFQ-NANVANQHNNAVSPMETIPVIPSGSYPGAENNSFPVGIETAASDSRVDAMDTDEMQPAGRSQPSAA--SNVEILGGAMRGIPPN---------IVSRPSVTEFGQLQQFLPFRDPTCWELPFLQGWLMGQSQAGVHSMLPLNGSGRDHSAQHLASSSTSQQSTYNSEASAASLAAPGSINISGVLGRSGRYQIPHSRFSVPESGEAAASTSTLHDGTDTQPIISRIQSELATSLAAAAAAELPCTVKLRVWSHDIKNPCAPLNAERCCLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPCTEADTGLQT-LVHQETGAATSPTRHPISAHQVMYELRIYSLEESTFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGR 1173
Match: A0A1Q3B4W6 ((WD40 domain-containing protein {ECO:0000313|EMBL:GAV63096.1}))
HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0
Identity = 407/701 (58.06%), Postives = 472/701 (67.33%), Query Frame = 0
Query: 15 VHRNCRNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAET-STALHSNVQSTAADTLPSYNPSRVPNLVHDGSNN-----IADVQLGEANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLR--TQLLPSTNPTSWELPFLQGWIMGQRQAVMHPELPH-----------VGRRQEGSSAYPRSHVEEDHHS--------------RSSLNNGIGATSFS----------------------LISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 657
+H + RNV+ ++A+RE +PR K + + HWGEAFK + S P+ + +DA+R L SWVEAESL+HLSAKYC LVP PRSTIAAAFS +G TIASTHGDHTVK+IDC+TG CL+VL+GHRRTPWVVRFHPLHPE+LASGSLDHEVRLW+ANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY+W Y++ GE SSP IVLKTRRSLRAVHFHPH AP LLTAEVNDLDSSDS++ R TS G L YPPP++F+ANVH S+ +SL E+PL P VP + DDS T L N VDSSS+Q SA +QF+ D N+ +D+ P E +LH+ + T ++ P+ S V D + + Q G + +NVD S P G V RP DL QL P +PT WELPFLQGW+MGQ Q + LPH VG SS P ++VE S RS L N I T FS +ISRIQ ELA S++A AA ELPCTVKLR+W H +KNPC+ L+ ERC LTIPHAVLCSEMGAHFSPCGRFLAACVAC+LP EADPG+ T H GA TSPTRHPISA Q+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR
Sbjct: 21 LHLSGRNVYSLIARREISPRKKYVPKNHWGEAFKCNASSSSWPRTKTARDAKRGLISWVEAESLRHLSAKYCPLVPPPRSTIAAAFSSNGTTIASTHGDHTVKIIDCQTGICLKVLSGHRRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYIWQYDKRGEASSPNIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANVHTSERVSLPDEVPL---PFLVVPSFSIDDSRTGL-YANRHVDSSSMQGVPSASMQFQTDANSAEQYDNTVSPMEMFPVSLHTGTEDTVNNSFPNGMGSGVSGSPIDAMDTEEMQRVDGSQQGSS--TNVDTLAGALSGVP---------GHIVLRP-----DLTEFVQLQPLRDPTCWELPFLQGWLMGQGQTGVPSLLPHNVSSPGHLAQYVGSSSL-SSNLPFNNVEAAVASLAIPGSVSLSGVSVRSGLRNRILCTRFSVSESAEGTVPMHSLQDGSDTQPIISRIQYELATSLAAAAAAELPCTVKLRVWSHDIKNPCAPLNTERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGIHT-LVHQDPGAGTSPTRHPISAHQVMYELRIYSLEEASFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR 699
Match: A0A2C9UPR2 ((Uncharacterized protein {ECO:0000313|EMBL:OAY32693.1}))
HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 402/701 (57.35%), Postives = 473/701 (67.48%), Query Frame = 0
Query: 25 ILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTALHSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGEANLSNVDPYGAN-----SSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWELPFLQGWIMGQRQAVMHPELP-HVGRRQ-------EGSSAYPRSHVEE------------DHHSRSSLNNGIGATSFS------------------LISRIQSELAASISATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR--GLAYGTKEGRLRVLECDRVH 677
+L +RE P+TK + ++ WGE + + S PK E +DA+R L SWVEAESL+HLSAKYC LVP PRSTIAAAFSPDG+T+ASTHGDHTVK+IDC+TGNCL+VL GHRRTPWVVRFHPL PE+LASGSLD+EVRLW+ANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY+W+YNR GE SSPTIVLKTRRSLRAVHFHPH AP LLTAEVNDLDSSDS++ R TS G L YPPP++F+AN S+ +SLAAELPLMS P ++P + D+ TD+ N V SS +Q E S+ Q + D NA ++D P ET + S+ + T ++ PS S +AD L + P G N +SA H ESG R A Q L S PT WEL FLQGW+MGQ QA + LP + G R+ S++YP +H E S SL + + FS + +RIQSE+A S+ A AA ELPCTVKLR+W H ++NPC+ L+ +RC LTIPHAVLCSEMGAHFSPCGR+LAACVAC+LP E DPGL T TG ATSPTRHPISARQ+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR G + EG+LRVL+ D H
Sbjct: 40 LLVRREICPKTKHVPKRRWGETSRWNANSSPMPKSEPARDAKRGLISWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLTGHRRTPWVVRFHPLQPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYIWHYNRRGEASSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFMANAQSSERVSLAAELPLMSFPFLFMPSFSMVDTRTDV---NRHVGSSIMQVESSSSRQLQSDANAAENYDTLVSPMETFPVVPSSREGTVSNPFPSGMRS-----------GLADSMLDAMETDEMQPLGGNHTDPETSASGNNMVHG-ESGNISVRQQSTEAGQLHQHLSSREPTWWELRFLQGWLMGQSQAGVPSVLPLNSGGREYSSQFTGSSSTSYPSNHNMETAVATLAMPTSLSGVSGRSLQHNVPPIRFSGESAAPMNMQHDVTDNQPIFNRIQSEIATSL-AAAAAELPCTVKLRVWSHDIQNPCAPLNAQRCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPNMETDPGLQT-LVQQDTGTATSPTRHPISARQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIEGKLRVLQYDGAH 723
Match: A0A6N2KGL0 ((Uncharacterized protein {ECO:0000313|EMBL:VFU27129.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 409/745 (54.90%), Postives = 486/745 (65.23%), Query Frame = 0
Query: 20 RNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTAL----HSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGE---ANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWEL-PFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY------------------------PRSHVEEDHHSRSSLNNGIGATSFS----------------------LISRIQSELAASI--SATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRG---------LAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVEV 696
RN F +L +RE PRTK ++ WGEA + S PK E +DA+R L SWVEAESL+HL+A+YCSLVP PRSTIAAAFSPDGKT+ASTHGDHTVK+IDC+TGNCL+VL GHRRTPWVVRFHPLHPE+LASGSLD+EVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY+W+YN+ GE SSPTIVL+TRRSLRAVHFHPHGAP LLTAEVNDLDSSDS++ R TS G L YPPP++F+AN SD ISLA+ELPL+S P +VP + DDS D+ N SS++ E S +Q ++D NA +D P ET A+ +++ + +D+ PS + V N D +GE N N+D +G +SA P H + R QL+PS + T WEL PFLQGW+MGQ QA + LP E S+ Y P S RS + + + FS + +RIQSE+A S+ +A AA ELPCTVKLR+W H +++PC+ L++++C LTIPHAVLCSEMGAHFSPCGR+LAACVAC+LP EADPGL T H G ATSPTRHPISA Q+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR + TK VLE RV D + L R + S ED V V
Sbjct: 35 RNAFCLLVRREICPRTKHTPKRRWGEASHWNSNSSSLPKTEPARDAKRGLISWVEAESLRHLTAEYCSLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWVVRFHPLHPEILASGSLDYEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANGQSSDRISLASELPLVSFPLLFVPSFSIDDSRVDV---NRHATSSTMLVESSTSIQLQMDTNAADRYDPLVSPMETFPAVPSSSYTSAEGIVSDSFPSGMGNGVSNTRKDAMETDEMQTVGEDPQGNSVNLDTFGVGNSATDGVPAH------TSVRQQSTDLGQLQQLVPSRDSTRWELPPFLQGWLMGQSQAGVPSTLPLNSGGHELSAQYLSPSALASYLSTQNVEAAVASLAMPGSTGLSGVSGRSGSRHRVSRSRFSVPESGESVAPINMQHEGTDNQPIFNRIQSEIATSLAAAAAAAAELPCTVKLRVWSHDIEHPCAPLNSDKCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQT-LVHQDIGTATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETKSPIYTVLEVYRVSDME-LVRV-LPSAEDEVNV 767
Match: A0A6N2KHE6 ((Uncharacterized protein {ECO:0000313|EMBL:VFU27130.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 409/745 (54.90%), Postives = 486/745 (65.23%), Query Frame = 0
Query: 20 RNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTAL----HSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLGE---ANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWEL-PFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY------------------------PRSHVEEDHHSRSSLNNGIGATSFS----------------------LISRIQSELAASI--SATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRG---------LAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVEV 696
RN F +L +RE PRTK ++ WGEA + S PK E +DA+R L SWVEAESL+HL+A+YCSLVP PRSTIAAAFSPDGKT+ASTHGDHTVK+IDC+TGNCL+VL GHRRTPWVVRFHPLHPE+LASGSLD+EVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY+W+YN+ GE SSPTIVL+TRRSLRAVHFHPHGAP LLTAEVNDLDSSDS++ R TS G L YPPP++F+AN SD ISLA+ELPL+S P +VP + DDS D+ N SS++ E S +Q ++D NA +D P ET A+ +++ + +D+ PS + V N D +GE N N+D +G +SA P H + R QL+PS + T WEL PFLQGW+MGQ QA + LP E S+ Y P S RS + + + FS + +RIQSE+A S+ +A AA ELPCTVKLR+W H +++PC+ L++++C LTIPHAVLCSEMGAHFSPCGR+LAACVAC+LP EADPGL T H G ATSPTRHPISA Q+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR + TK VLE RV D + L R + S ED V V
Sbjct: 35 RNAFCLLVRREICPRTKHTPKRRWGEASHWNSNSSSLPKTEPARDAKRGLISWVEAESLRHLTAEYCSLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWVVRFHPLHPEILASGSLDYEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANGQSSDRISLASELPLVSFPLLFVPSFSIDDSRVDV---NRHATSSTMLVESSTSIQLQMDTNAADRYDPLVSPMETFPAVPSSSYTSAEGIVSDSFPSGMGNGVSNTRKDAMETDEMQTVGEDPQGNSVNLDTFGVGNSATDGVPAH------TSVRQQSTDLGQLQQLVPSRDSTRWELPPFLQGWLMGQSQAGVPSTLPLNSGGHELSAQYLSPSALASYLSTQNVEAAVASLAMPGSTGLSGVSGRSGSRHRVSRSRFSVPESGESVAPINMQHEGTDNQPIFNRIQSEIATSLAAAAAAAAELPCTVKLRVWSHDIEHPCAPLNSDKCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQT-LVHQDIGTATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETKSPIYTVLEVYRVSDME-LVR-VLPSAEDEVNV 767
Match: A0A836J8J6 ((Transducin/WD-40 repeat family protein {ECO:0000313|EMBL:KAG5252285.1}))
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 408/745 (54.77%), Postives = 486/745 (65.23%), Query Frame = 0
Query: 20 RNVFHILAQRETTPRTKCLARKHWGEAFKSDVESYLEPKVERLKDARRELFSWVEAESLQHLSAKYCSLVPAPRSTIAAAFSPDGKTIASTHGDHTVKLIDCKTGNCLQVLNGHRRTPWVVRFHPLHPEVLASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYLWNYNRSGEHSSPTIVLKTRRSLRAVHFHPHGAPLLLTAEVNDLDSSDSAVARPTSLGSLYYPPPSIFLANVHRSDSISLAAELPLMSSPSSYVPIIARDDSETDLQLGNPPVDSSSIQAEFSAPVQFEIDLNAIGHFDHRALPAETSTAL----HSNVQSTAADTLPSYNPSRVPNLVHDGSNNIADVQLG---EANLSNVDPYGANSSAQPYTPQHAVESGFSVTRPIRVPADLRTQLLPSTNPTSWEL-PFLQGWIMGQRQAVMHPELPHVGRRQEGSSAY------------------------PRSHVEEDHHSRSSLNNGIGATSFS----------------------LISRIQSELAASI--SATAATELPCTVKLRIWLHSLKNPCSVLDNERCLLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPESEADPGLLTQFYHNGTGAATSPTRHPISARQIMYELRIYSLE---FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRG---------LAYGTKEGRLRVLECDRVHDHQNLARPDIISPEDMVEV 696
RN F +L +RE PRTK ++ WGEA + S PK E +DA+R L SWVEAESL+HL+A+YCSLVP PRSTIAAAFSPDGKT+ASTHGDHTVK+IDC+TGNCL+VL GHRRTPWVVRFHPLHPE+LASGSLD+EVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLY+W+YN+ GE SSPTIVL+TRRSLRAVHFHPHGAP LLTAEVNDLDSSDS++ R TS G L YPPP++F+AN SD ISLA+ELPL+S P +VP + DDS D+ N SS++ E S +Q ++D NA +D P ET A+ +++ + +D+ PS + V N D +G + N N+D +G +SA P H + R QL+PS + T WEL PFLQGW+MGQ QA + LP E S+ Y P S RS + + + FS + +RIQSE+A S+ +A AA ELPCTVKLR+W H +++PC+ L++++C LTIPHAVLCSEMGAHFSPCGR+LAACVAC+LP EADPGL T H G ATSPTRHPISA Q+MYELRIYSLE FGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR + TK VLE RV D + L R + S ED V V
Sbjct: 35 RNAFCLLVRREICPRTKHTPKRRWGEASHWNSNSSSLPKTEPARDAKRGLISWVEAESLRHLTAEYCSLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWVVRFHPLHPEILASGSLDYEVRLWNANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKLYIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANGQSSDRISLASELPLVSFPLLFVPSFSIDDSRVDV---NRHATSSTMLVESSTSIQPQMDTNAADRYDPLVSPMETFPAVPSSSYTSAEGIVSDSFPSGMGNGVSNTRKDAMETDEMQTVGGDLQGNSVNLDTFGVGNSATDGVPAH------TSVRQQSTDLGQLQQLVPSRDSTRWELPPFLQGWLMGQSQAGVPSTLPLNSGGHELSAQYLSPSALASYLSTQNVEAAVASLAMPGSTGLSGVSGRSGSRHRVSRSRFSVPESGESVAPINMQHEGTDNQPIFNRIQSEIATSLAAAAAAAAELPCTVKLRVWSHDIEHPCAPLNSDKCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQT-LVHQDIGTATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETKSPIYTVLEVYRVSDME-LVR-VLPSAEDEVNV 767
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CDS5 | E-Value: 1.183e-1, PID: 58.48 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7903... [more] |
| A0A2R6P6X6 | E-Value: 0.000e+0, PID: 59.65 | (Activating molecule in BECN1-regulated autophagy ... [more] |
| A0A834ZBB4 | E-Value: 0.000e+0, PID: 53.52 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8402... [more] |
| F6HZS8 | E-Value: 0.000e+0, PID: 57.02 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6019... [more] |
| A0A5C7I4X3 | E-Value: 0.000e+0, PID: 58.53 | (Uncharacterized protein {ECO:0000313|EMBL:TXG6391... [more] |
| A0A1Q3B4W6 | E-Value: 0.000e+0, PID: 58.06 | (WD40 domain-containing protein {ECO:0000313|EMBL:... [more] |
| A0A2C9UPR2 | E-Value: 0.000e+0, PID: 57.35 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3269... [more] |
| A0A6N2KGL0 | E-Value: 0.000e+0, PID: 54.90 | (Uncharacterized protein {ECO:0000313|EMBL:VFU2712... [more] |
| A0A6N2KHE6 | E-Value: 0.000e+0, PID: 54.90 | (Uncharacterized protein {ECO:0000313|EMBL:VFU2713... [more] |
| A0A836J8J6 | E-Value: 0.000e+0, PID: 54.77 | (Transducin/WD-40 repeat family protein {ECO:00003... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
