MAAADTSLSSSSSSSVSMTSPSWTQQEEAPPVISVVIGGESGNQDNSNAG
GLKQVWGKPVNVNGSSGGAAVLSAAVATVDVSSRASEAPAAGVVMDTHSW
PALSKAPPKSASSDSVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTN
TRQRSIKRGTNNGGFIQPSSPQPQAPAVEVLPGKPGITTGESSSHKEGGP
KGGFGNDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWN
HTQQSYGSRDNYMQQQRGAHRGYPRGPHASPFIAPQPLPVRPYPNHMVFP
TDVPQPVFYVQSPESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIE
YYFSNENLVKDTFLRRNMDEQGWVMNLTDNILLILNAVQASTVVEVQNDR
IRKRNEWMKWIMPPGPFSPVSSPQARAKSGHDMLTGQFQGVTLDERSVHG
HTDMFKKSLSGEFSSQLQHSGGEGDVHSGFEHKSSAGSLSK*
| Relationships |
|---|
| The polypeptide, DCAR_011612, derives from mRNA, DCAR_011612. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A1J6ING0 ((La-related protein 1c {ECO:0000313|EMBL:OIS99254.1}))
HSP 1 Score: 293.893 bits (751), Expect = 6.888e-91
Identity = 203/481 (42.20%), Postives = 272/481 (56.55%), Query Frame = 0
Query: 40 ESGNQDNSNAGGLKQ-VWGKPVNVNGSSGGAAVLSAAVATVDVSSRASEAPAAGVVMDTHSWPALS---KAPPKSASSDSVPTSHSGS-----GMGSISSSK-QVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLPGKPGIT-------TGESSSHKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP-HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPGPFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV-HGHTDMF-KKSLSGEFSSQLQHSGGE 473
++GN D SN+ K+ W KP N GAA +S P G V WPALS KA PK +SS+S+ GS G G SSS Q N ++PNS +NHV TRQRS+KRG + NGGF Q Q Q+ VE++ K G + + + +SH++GG GGFG N+HQ QR++ NRRG G HPRGD +YH GGRRDQ+RGNQDW + +G+RD +MQ QR R + GP H SP P +PV PY MV+ ++VP PV++ P ++ R MP ++ P + +PDPQL KI+NQI+YYFSNENL+KDTFLRRNMDE GW VM+LTDNI LIL+ +++STVVEVQ +++R+RN+W WI+PP + + SPQ+ KS D L Q V D+ ++ HG+ + + K S E S+ + G E
Sbjct: 86 DNGNSDGSNSNVAKKPAWNKPSN------GAAEVS---------------PVMGAVC----WPALSDSTKASPKLSSSESLKALSDGSVSVTQGTGMTSSSHGQANTNNANPNSTLNHVAPTRQRSMKRGGGYSNNNASANGGFSQQ---QGQSSEVEIVLNKSGKSGNAGADSSSKDNSHRDGGQWGGFGSQSHGGNEHQHQRNS--NRRGNVGPHPRGDGTYHQGYGGRRDQERGNQDWK-LHRGWGNRDAHMQPQRVPARPFMGGPPHTSPPFIPPTMPVHPYRAPMVY-SEVP-PVYFFPGPLPDTFR-----MPMLSPVPPVFFHMPDPQLQTKIVNQIDYYFSNENLIKDTFLRRNMDEHGWVSVALIAGFKKVMSLTDNIQLILDFMRSSTVVEVQGEKLRRRNDWNHWIIPPSVENSIISPQSPQKSTPDFLAENLQRVAFDDETIRHGNAEAYLSKPSSAELSTSSKQFGNE 528
Match: A0A068U026 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 293.508 bits (750), Expect = 2.847e-90
Identity = 199/408 (48.77%), Postives = 247/408 (60.54%), Query Frame = 0
Query: 88 APAAGVVMDTHSWPALS---KAPPKSASSD-------SVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRGTNNGGFIQPSS-----------PQPQAPAVEV---LPGKPGITTGESSSHKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRR-DQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGPHASPFIAPQPLP--VRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPG-PFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV 448
A AG VM SWPALS +A PKS+S SVP S + +GM S S+ KQ I ++ +S NH RQRS+KRG GG PSS P P++ VE GKP +SS H+EGG +GG G NDHQ QR NSF R GG PRGD S+HH GGRR DQDRGNQDWN + G RD +MQ QR A R + RGPH +P P P VRP+ +V+P DVP VFY+ P ESLR VP++P +A P+++P PDPQL KI+NQIEYYFSNENLVKDT+LR+NMD+QGW V LTDNI IL++V+ S VEV+ +++R+RN+WMKWIMPP +S +SSPQ+ KS DML FQ + LDE++
Sbjct: 137 ATEAGPVMGAFSWPALSESTRASPKSSSESLKTLSDVSVPVSQA-TGMASPSAHKQGINANTNSSSTPNHAPYNRQRSMKRG---GGSGNPSSNASANGGPSQLPSPRSSGVETGSNNSGKPANPVSDSS-HREGGQRGGVGSQSHSGNDHQQQR-NSFKRGSGG---PRGDGSHHHGYGGRRGDQDRGNQDWNPNRSFGGGRDTHMQSQRVASRPFMRGPHPTPPPFMPPTPMPVRPFGTPIVYP-DVPSTVFYLPGPHPESLR-AVPMVPPMA--PLFFP-FPDPQLQTKIVNQIEYYFSNENLVKDTYLRQNMDDQGWVPIKLIASFKKVTQLTDNIQFILDSVRTSGAVEVEGEKVRRRNDWMKWIMPPSVQYSTISSPQSMQKSSQDMLALNFQSMALDEKTT 530
Match: A0A6P6T6T3 ((la-related protein 1C-like {ECO:0000313|RefSeq:XP_027073994.1}))
HSP 1 Score: 290.812 bits (743), Expect = 5.218e-89
Identity = 198/408 (48.53%), Postives = 246/408 (60.29%), Query Frame = 0
Query: 88 APAAGVVMDTHSWPALS---KAPPKSASSD-------SVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRGTNNGGFIQPSS-----------PQPQAPAVEV---LPGKPGITTGESSSHKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRR-DQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGPHASPFIAPQPLP--VRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPG-PFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV 448
A AG VM WPALS +A PKS+S SVP S + +GM S S+ KQ I ++ +S NH RQRS+KRG GG PSS P P++ VE GKP +SS H+EGG +GG G NDHQ QR NSF R GG PRGD S+HH GGRR DQDRGNQDWN + G RD +MQ QR A R + RGPH +P P P VRP+ +V+P DVP VFY+ P ESLR VP++P +A P+++P PDPQL KI+NQIEYYFSNENLVKDT+LR+NMD+QGW V LTDNI IL++V+ S VEV+ +++R+RN+WMKWIMPP +S +SSPQ+ KS DML FQ + LDE++
Sbjct: 163 ATEAGPVMGAFPWPALSESTRASPKSSSESLKTLSDVSVPVSQA-TGMASPSAHKQGINANTNSSSTPNHAPYNRQRSMKRG---GGSGNPSSNASANGGPSQLPSPRSSGVETGSNNSGKPANPVSDSS-HREGGQRGGVGSQSHSGNDHQQQR-NSFKRGSGG---PRGDGSHHHGYGGRRGDQDRGNQDWNPNRSFGGGRDTHMQSQRVASRPFMRGPHPTPPPFMPPTPMPVRPFGTPIVYP-DVPSTVFYLPGPHPESLR-AVPMVPPMA--PLFFP-FPDPQLQTKIVNQIEYYFSNENLVKDTYLRQNMDDQGWVPIKLIASFKKVTQLTDNIQFILDSVRTSGAVEVEGEKVRRRNDWMKWIMPPSVQYSTISSPQSMQKSSQDMLALNFQSMALDEKTA 556
Match: A0A5B7B921 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 287.345 bits (734), Expect = 3.999e-88
Identity = 209/501 (41.72%), Postives = 274/501 (54.69%), Query Frame = 0
Query: 30 PPVISVVIGGESGNQDNSNAGGLKQ-VWGKPVNVNGSSGGAAVLSAAVATVDVSSRASEAPAAGVVMDTHSWPALS---KAPPKSASSDSVP-------TSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNT-RQRSIKRGTNNGG--------FIQPSSPQPQAPAVEV---LPGKPGITTGESSS----HKEGGPKGGFG------NDH-QPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPR-GPHASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQ-SPESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPGPFSPVSSPQARAKSGHDMLTGQFQGVTLDER-SVHGHTDMF-KKSLSGEFSSQLQHSGGEGDVHSGFE 481
P +V + ES + + N+ K+ W KP N GA + G VM SWPALS +A PKS SS+S+ + GSG+ S SS KQ+I N ++P+ NHVT RQ+ ++R + F+QP P VE+ GK G +SSS HKE G +GGFG NDH Q Q+ +S RRG GG HPRGD SYHH+ GGRRDQDRGN DWN +++ SRD +MQ R R Y R PH+S P P N M +P D+P P+ Y+ PESLR VPI+ + HPM++ P+PD QLH KI+ QI+YYFSNENL+KD FLR+NMD+QGW V LTD+I LIL V+ STVVEVQ D++R+RN+W KWI+ P VSSPQ +S +D L Q V+L+E+ + G + F +S SG+ +SQ Q S EG + F+
Sbjct: 89 PEDCAVEVQAESSDNGSGNSNAAKKPAWNKPSN------GAVEI-------------------GPVMGAVSWPALSESTRASPKSTSSESLKALSDGSVSISQGSGIASSSSQKQIIPNNANPSLTANHVTPPGRQKFMRRSGGSSSGSVSANGGFLQP----PPVSVVEMPSNNAGKSGSVLLDSSSRDHTHKETGHRGGFGSQSHSGNDHTQTQQRHSL-RRGNGGPHPRGDGSYHHNYGGRRDQDRGNHDWN-PHRNFNSRDAHMQPHRVVPRSYMRPSPHSSAPFIPPPPVPVRPYNPMGYP-DMPPPLIYLHPPPESLRS-VPIVAPIPPHPMFF-PVPDTQLHAKIVTQIDYYFSNENLIKDAFLRQNMDDQGWVPIKLIAGFKKVAQLTDSIQLILEVVRTSTVVEVQGDKVRRRNDWKKWIIGPT----VSSPQPLGRSSYDTLAANLQSVSLEEKNNKQGQAEAFPSRSSSGDLNSQSQPSSSEGTGQATFQ 551
Match: A0A7J0DIF7 ((Winged-helix DNA-binding transcription factor family protein {ECO:0000313|EMBL:GFS35805.1}))
HSP 1 Score: 277.715 bits (709), Expect = 2.768e-84
Identity = 189/435 (43.45%), Postives = 254/435 (58.39%), Query Frame = 0
Query: 94 VMDTHSWPALS---KAPPKSASSDSVPTSH----SGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLPGKPGITTGESSS----HKEGGPKGGFGN-----DHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP---HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQSP---ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQAST-----------VVEVQNDRIRKRNEWMKWIMPPG-PFSPVSSPQARAKSGHDMLTGQFQGVTLDERSVHGHTDMFK-KSLSGEFSSQLQHSGGEG 474
VM SWPALS +A PKSASSDS+ G+G+ S SS KQVI + ++P+ NHVT T Q+S+KR T NGG P P + GK G + E+SS HKEGG +GG+G+ + Q Q NS+ RRG G HPRGD SYHH+ GGRR+QDRGN N + +S+ RD ++Q QR RG+ GP ++PFI P P+ +RPY N MV+P +V P+ YVQ+P +SLRGV P VA P + P+PDP L KI+NQI+YYFSNENL+KDTFLRRNM E GW VM+LT NI LIL+A+++S ++ ++RKRN+W +WIM P F + SPQ+ S D+ + Q ++L++ + G + F +SLS + +SQ + S GEG
Sbjct: 109 VMGAVSWPALSESTRASPKSASSDSMKDGSVLVSQGTGVSSSSSQKQVITDNTNPSLAPNHVTLTSQKSMKRSGGSTSGSVTANGGLSLPVPPPSLVVEIPNNAGKLGSSVPETSSRDHTHKEGGQRGGYGSQSHDGNDQIQHRNSY-RRGNGTPHPRGDGSYHHNYGGRREQDRGNHGRN-SHRSFNGRDAHVQPQRLGPRGF-MGPPPRSSTPFIPP-PVAMRPYGNPMVYP-EVVAPMMYVQAPPPPDSLRGV----PMVAPMPPMFYPVPDPHLPTKIVNQIDYYFSNENLIKDTFLRRNMGEDGWVPIELIASFKKVMDLTTNIQLILDAMRSSEVVEVEVEMQDGLIPFPCGKLRKRNDWRRWIMIPSVQFPTIPSPQSLGSSSRDVFATELQSLSLEKTNKQGRDEAFLGRSLSSDLNSQSKVSTGEG 534
Match: A0A6P6TIE4 ((la-related protein 1C-like {ECO:0000313|RefSeq:XP_027077790.1}))
HSP 1 Score: 278.1 bits (710), Expect = 3.695e-84
Identity = 196/407 (48.16%), Postives = 239/407 (58.72%), Query Frame = 0
Query: 88 APAAGVVMDTHSWPALS---KAPPKSASSD-------SVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRGTNNGGFIQPSS-----------PQPQAPAVEVLPGKPGITTG--ESSSHKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRR-DQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGPHASPFIAPQPLP--VRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPG-PFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV 448
A AG VM SWPALS +A PKS+S SVP S + +GM S S+ KQ I ++ +S NH RQRS+KRG GG PSS P P++ VE G T SSH+EGG +GG G NDHQ QR NSF R GG PRGD S+HH GGRR DQDRGNQDWN + G RD +MQ QR A R + RGPH +P P P VRP+ +V+P DVP VFY+ P ESLR V P V ++ P PDPQL KI+NQIEYYFSNENLVKDT+LR+NMD+QGW V LTDNI LIL++V+ S VEV+ +++R+RN+W KWIMPP +S +SSPQ+ KS DML FQ + LDE++
Sbjct: 161 ATEAGPVMGAFSWPALSESTRASPKSSSESLKTLSDVSVPVSQA-TGMASPSAHKQGINANTNSSSTPNHAPYNRQRSMKRG---GGSGNPSSNASANGGPSQLPSPRSSGVETGSNNSGKTANPVSDSSHREGGQRGGVGSQSHSGNDHQQQR-NSFKRGSGG---PRGDGSHHHGYGGRRGDQDRGNQDWNPNRSFGGGRDTHMQSQRVASRPFIRGPHPTPPPFMPPTPMPVRPFGTPIVYP-DVPSTVFYLPGPHPESLRAV----PMVPPMAPFFFPFPDPQLQTKIVNQIEYYFSNENLVKDTYLRQNMDDQGWVPIKLIASFKKVTQLTDNIQLILDSVRTSGAVEVEGEKVRRRNDWTKWIMPPSVQYSTISSPQSMQKSSQDMLALNFQSMALDEKTA 554
Match: A0A1S4BFR7 ((la-related protein 1C-like {ECO:0000313|RefSeq:XP_016487722.1}))
HSP 1 Score: 276.944 bits (707), Expect = 4.461e-84
Identity = 197/479 (41.13%), Postives = 264/479 (55.11%), Query Frame = 0
Query: 40 ESGNQDNSNAGGLKQ-VWGKPVNVNGSSGGAAVLSAAVATVDVSSRASEAPAAGVVMDTHSWPALSKAPPKSASS----------DSVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLPGKPGITTGESSS----HKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP-HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPGPFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV-HGHTDMF-KKSLSGEFSSQLQHSGGE 473
++GN D+SN+ K+ W KP N GAA +S P G V WPALS + S S D + G+GM S SS Q N ++PNS +NHV TRQRS+KRG + NGGF Q +A V GK G + +SSS H++GG GGFG ++HQ QR++ NRRG G HPRGD +YH GGRRDQ+RGNQDW + +G+RD +MQ QR R + GP H SP P +PV PY MV+ ++VP PV++ P ++ R MP ++ P + +PDPQL KI+NQI+YYFSNENL+KDTFLRRNMDE GW VM+LTDNI LIL+ +++STVVEVQ +++R+RN+W WI+PP + SPQ+ KS D L Q V D+ ++ HG+ + + + S E S+ + G E
Sbjct: 111 DNGNSDDSNSNVSKKPAWNKPSN------GAAEVS---------------PVMGAVC----WPALSDSTKASPKSSSSESLKALSDGSVSVTQGTGMAS-SSHGQANTNNANPNSTLNHVAPTRQRSMKRGGGYSNHNASANGGFSQQQGQSSEAEIVFNKSGKSGNSGADSSSKDNSHRDGGQWGGFGSQSHGGHEHQHQRNS--NRRGNVGPHPRGDGTYHLGYGGRRDQERGNQDWK-PHRGWGNRDAHMQPQRVPARPFMGGPPHTSPPFIPPTMPVHPYRAPMVY-SEVP-PVYFFPGPLPDTFR-----MPMLSPVPPVFFHMPDPQLQTKIVNQIDYYFSNENLIKDTFLRRNMDEHGWVSVMLIAGFKKVMSLTDNIQLILDVMRSSTVVEVQGEKLRRRNDWNHWIIPPSVQNSTISPQSPQKSSPDSLAENLQRVAFDDETIRHGNAEAYLSRPSSAELSTPSKQFGNE 553
Match: A0A2R6RJ08 ((La-related protein like {ECO:0000313|EMBL:PSS29995.1}))
HSP 1 Score: 275.404 bits (703), Expect = 5.463e-84
Identity = 199/437 (45.54%), Postives = 265/437 (60.64%), Query Frame = 0
Query: 73 SAAVATVDVSSRASEAPAAGVVMDTHSWPALS---KAPPKSASSDSVPTSHSGS-----GMGSISSS--KQVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLPGKPGITTGESSSH-KEGGPKGGFG-----NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP---HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQ--SPESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGWV-MN----------LTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPGP-FSPVSSPQARAKSGHDMLTGQFQGVTL-DERSVHGHTDMF-KKSLSGEFSSQ 466
S+ A V ++ S G VM SWPALS +A PKS SSDS+ GS G G +SSS KQV N ++PN NHV TRQ+S+KRG T NGGF QP P P VE P G+S H E G +GGFG NDH PQ+ NSF RRG GG +PRGD SYHH+ GG+RDQDR +WN + + + RD +M QRG RG R P +P P+P+R + N + +P +VP P+ Y+ +P+S RGV P++ Q+ H M++ +PD LHVK++NQI+YYFSN NL+KDTFLR+NMD+QGWV +N LTDNI IL+A+ S+VVEV+ ++IRKR++W +W+MPP F VSSPQ + S +DML QGV+L DE++ HG ++F +S +G+ +SQ
Sbjct: 81 SSNAAKKLVWNKPSNGVELGPVMGGVSWPALSESTRASPKSTSSDSLKPLSDGSVSISLGTGIVSSSTPKQVFTNNTNPNLTPNHVAPTRQKSMKRGGGSSSGNATANGGFTQP--PLPLGTVVET----PSNNAGKSDLHVPESGQRGGFGQSHGGNDH-PQQRNSF-RRGNGGPYPRGDGSYHHNLGGKRDQDR---EWN-SHRGFSGRDAHMHPQRGVPRGVIRPPPHNSIPFIPSPPPVPLRTFGNPIGYP-EVPPPMMYLPAPTPDSYRGV-PVVAQMP-HAMFFN-VPDLPLHVKVVNQIDYYFSNANLIKDTFLRQNMDDQGWVSINLIASFKKVSVLTDNIPFILDALGMSSVVEVKENKIRKRDDWWRWVMPPSTQFPTVSSPQLQGSSSYDMLAANIQGVSLEDEKNKHGQAELFPSRSSAGDLNSQ 501
Match: A0A2R6R5X1 ((La-related protein like {ECO:0000313|EMBL:PSS21409.1}))
HSP 1 Score: 276.559 bits (706), Expect = 6.135e-84
Identity = 195/454 (42.95%), Postives = 262/454 (57.71%), Query Frame = 0
Query: 94 VMDTHSWPALS---KAPPKSASSDSVP------TSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLP----GKPGITTGESSS----HKEGGPKGGFGN-----DHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP---HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQSP---ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQAST-----------VVEVQNDRIRKRNEWMKWIMPPG-PFSPVSSPQARAKSGHDMLTGQFQGVTLDERSVHGHTDMFK-KSLSGEFSSQLQHSGGEGDVHSGFEHKSSAG 487
+M SWPALS +A PKSASSDS+ + +G S SS KQVI + ++P+ NHVT T Q+S+KR T NGG S P P V +P GK G + E+SS HKEGG +GG+G+ + Q Q NS+ RRG G HPRGD SYHH+ GGRR+QDRGN N + +S+ RD ++Q QR RG+ GP ++PFI P P+ +RPY N MV+P +V P+ YVQ+P +SLRGV P VA P + P+PDP L KI+NQI+YYFSNENL+KDTFLRRNMDE GW VM+LT NI LIL+A+++S ++ ++RKRN+W +WIM P F + SPQ+ S D+ + Q ++L++ + G + F +SLSG+ +SQ + S GEG + K S G
Sbjct: 109 LMGAVSWPALSESTRASPKSASSDSMKDGSVLVSQGTGISSSSSSSQKQVITDNTNPSLAPNHVTLTSQKSMKRSGGSTSGSVTANGGL---SLPVPPLSLVVEIPSNNAGKLGSSVPETSSRDHTHKEGGQRGGYGSQSHDGNDQIQHRNSY-RRGNGTPHPRGDGSYHHNYGGRREQDRGNHGRN-SHRSFNGRDAHVQPQRLGPRGF-MGPPPRSSTPFIPP-PVAMRPYGNPMVYP-EVVAPMMYVQAPPPPDSLRGV----PMVAPMPPMFYPVPDPHLPTKIVNQIDYYFSNENLIKDTFLRRNMDEDGWVPIELIARFKKVMDLTTNIQLILDAMRSSEVVEVEVEMQDGLIPFPCGKLRKRNDWRRWIMIPSVQFPTIPSPQSLGSSSCDVFATELQSLSLEKTNKQGRDEAFLGRSLSGDLNSQSKVSTGEGTRLVNSQSKVSTG 550
Match: A0A1U7V3D2 ((la-related protein 1C-like {ECO:0000313|RefSeq:XP_009759466.1}))
HSP 1 Score: 276.559 bits (706), Expect = 8.002e-84
Identity = 197/479 (41.13%), Postives = 264/479 (55.11%), Query Frame = 0
Query: 40 ESGNQDNSNAGGLKQ-VWGKPVNVNGSSGGAAVLSAAVATVDVSSRASEAPAAGVVMDTHSWPALSKAPPKSASS----------DSVPTSHSGSGMGSISSSKQVIGNTSSPNSNVNHVTNTRQRSIKRG--------TNNGGFIQPSSPQPQAPAVEVLPGKPGITTGESSS----HKEGGPKGGFG------NDHQPQRSNSFNRRGGGGQHPRGDASYHHSSGGRRDQDRGNQDWNHTQQSYGSRDNYMQQQRGAHRGYPRGP-HASPFIAPQPLPVRPYPNHMVFPTDVPQPVFYVQSP--ESLRGVVPIMPQVAAHPMYYPPIPDPQLHVKIMNQIEYYFSNENLVKDTFLRRNMDEQGW-----------VMNLTDNILLILNAVQASTVVEVQNDRIRKRNEWMKWIMPPGPFSPVSSPQARAKSGHDMLTGQFQGVTLDERSV-HGHTDMF-KKSLSGEFSSQLQHSGGE 473
++GN D+SN+ K+ W KP N GAA +S P G V WPALS + S S D + G+GM S SS Q N ++PNS +NHV TRQRS+KRG + NGGF Q +A V GK G + +SSS H++GG GGFG ++HQ QR++ NRRG G HPRGD +YH GGRRDQ+RGNQDW + +G+RD +MQ QR R + GP H SP P +PV PY MV+ ++VP PV++ P ++ R MP ++ P + +PDPQL KI+NQI+YYFSNENL+KDTFLRRNMDE GW VM+LTDNI LIL+ +++STVVEVQ +++R+RN+W WI+PP + SPQ+ KS D L Q V D+ ++ HG+ + + + S E S+ + G E
Sbjct: 111 DNGNSDDSNSNVSKKPAWNKPSN------GAAEVS---------------PVMGAVC----WPALSDSTKASPKSSSSESLKALSDGSVSVTQGTGMAS-SSHGQANTNNANPNSTLNHVAPTRQRSMKRGGGYSNHNASANGGFSQQQGQSSEAEIVFNKSGKSGNSGADSSSKDNSHRDGGQWGGFGSQSHGGHEHQHQRNS--NRRGNVGPHPRGDGTYHLGYGGRRDQERGNQDWK-PHRGWGNRDAHMQPQRVPARPFMGGPPHTSPPFIPPIMPVHPYRAPMVY-SEVP-PVYFFPGPLPDTFR-----MPMLSPVPPVFFHMPDPQLQTKIVNQIDYYFSNENLIKDTFLRRNMDEHGWVSVMLIAGFKKVMSLTDNIQLILDVMRSSTVVEVQGEKLRRRNDWNHWIIPPSVQNSTISPQSPQKSSPDSLAENLQRVAFDDETIRHGNAEAYLSRPSSAELSTPSKQFGNE 553
| Match Name | Stats | Description |
|---|---|---|
| A0A1J6ING0 | E-Value: 6.888e-91, PID: 42.20 | (La-related protein 1c {ECO:0000313|EMBL:OIS99254.... [more] |
| A0A068U026 | E-Value: 2.847e-90, PID: 48.77 | HTH La-type RNA-binding domain-containing protein ... [more] |
| A0A6P6T6T3 | E-Value: 5.218e-89, PID: 48.53 | (la-related protein 1C-like {ECO:0000313|RefSeq:XP... [more] |
| A0A5B7B921 | E-Value: 3.999e-88, PID: 41.72 | HTH La-type RNA-binding domain-containing protein ... [more] |
| A0A7J0DIF7 | E-Value: 2.768e-84, PID: 43.45 | (Winged-helix DNA-binding transcription factor fam... [more] |
| A0A6P6TIE4 | E-Value: 3.695e-84, PID: 48.16 | (la-related protein 1C-like {ECO:0000313|RefSeq:XP... [more] |
| A0A1S4BFR7 | E-Value: 4.461e-84, PID: 41.13 | (la-related protein 1C-like {ECO:0000313|RefSeq:XP... [more] |
| A0A2R6RJ08 | E-Value: 5.463e-84, PID: 45.54 | (La-related protein like {ECO:0000313|EMBL:PSS2999... [more] |
| A0A2R6R5X1 | E-Value: 6.135e-84, PID: 42.95 | (La-related protein like {ECO:0000313|EMBL:PSS2140... [more] |
| A0A1U7V3D2 | E-Value: 8.002e-84, PID: 41.13 | (la-related protein 1C-like {ECO:0000313|RefSeq:XP... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |