MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAG
KVLSRQISAQEFDDNNYFEGFWLIKNSPEPAALRGIFNKETTTPLMSQLK
SNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNK
DENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRETQSN
KKSRRNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRP
DLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLE
SADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKI
KRDMEDIVSNFKEELKKVRREMDEQFTKKIQEEIWSLQVQSSAPWKSDFE
SALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVELASKTTDCCAEKERN
HAALERCHALALKESASTGEKTAAEEKAAKLQKLKSGFRICKPQGTFLWP
NMGASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPI
RPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLND
IPDTDGAFSTAATKRHFLPSTVKRETASAWECIGSSRCSNMSAFVAECTV
NAGETSQQGKRECTSSTLCLSSAAGHRMPLSAANSTRG*
| Relationships |
|---|
| The polypeptide, DCAR_009450, derives from mRNA, DCAR_009450. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A4S4EMR0 ((Uncharacterized protein {ECO:0000313|EMBL:THG17949.1}))
HSP 1 Score: 537.339 bits (1383), Expect = 2.264e-179
Identity = 337/691 (48.77%), Postives = 455/691 (65.85%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWL-IKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRET--QSNKKSRRNKCKKM-IVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQSSA--------------PWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMV-----ELASK----TTDCCAEKERNHAALERCHALALKESA-------STGEKTAAEEKAAKLQKLKSGFRICKPQGTFLWPNMGASN-----------GSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPY--HHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIPDT---DGAFSTAATKR-----HFLPSTVKRETASAWECIG 634
MV+EKTELNVSVR+PSI SL Y S N+ + ++YP LDE FVMGT LA KVL R+I +QEF + FWL I NS + + ++++ T +S+LK NGM+RWG+RRQV+FI + + +PQSS+S V+G+KE E E +E+ + E ++E+ +D E E T+E K+ KR +R AKKVKRE Q NK +N CK++ ++ + +RWSA+RYKLAE+NLLEVMKSKGA+F SPILRP+LR EARKRIGDTGLLDHLLKH+AGK+APGG +RFRRRHNA+G MEYWLESADLV +R+EAGVQDPYWTPPPGW GDCP+QDP+CA EL+ LK+E K++RDME++VS EEL K+RREM E + K EE ++ V + + P+KSD +S+ + + K ++QL IS+ ++ +++++ L S V +L S T+CC EKE+ E A + E+TAAE+KAAK+Q+LKSGFRICKPQGTFLWPNM ++N SS +V +VEDL +V TPPSVSSSTA APPQLP+ HHHH P+SP++P+ ERRAVTVTV + + + ++T ++ +K++++L+NLND P T DG T +T++ PS V+ E WE +G
Sbjct: 69 MVSEKTELNVSVRFPSIESLQRYFS-NR--TREMYPELDERFVMGTTLAEKVLFRKIPSQEFAEKKQSNEFWLEICNSV--SGFGDVISRKSGT-CVSELKCNGMIRWGVRRQVRFIGKHRE----NPQSSSSIVRGAKEANEEEEEEEAEVEEEEEEEDDKEAVTEETNEIGKR--KRSSRLVR----NAKKVKREKRRQINKPKTKNSCKQIAVLKNPQDRWSADRYKLAERNLLEVMKSKGAVFGSPILRPELRAEARKRIGDTGLLDHLLKHMAGKVAPGGSDRFRRRHNAEGAMEYWLESADLVDIRREAGVQDPYWTPPPGWKQGDCPTQDPICAMELKQLKKETTKLERDMEEMVSKKQMDEELAKLRREMLELLSIKQNEESQAIVVSNPSATSQNLDLDTSLLVPFKSDLDSSFITLEKYKEQLMVISEYVSRIEEEIKKLKSKVGEEETKLDSSALMVATECCTEKEKKKVGENGKQQEVGTEGADNQSKTNTAAERTAAEQKAAKIQRLKSGFRICKPQGTFLWPNMASNNNKNSNANTSMLSSSQVVVQVEDLLVVPTPPSVSSSTASAPPQLPFHRHHHHHPSSPVKPLAERRAVTVTV--SAIGNPNVSTTTTTTTTTTSTITNKTSSTLLNLNDFPTTNPGDGFCGTPSTRQTVNNTTLTPSKVEGEMGRPWEVVG 741
Match: A0A7J7I456 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5959813.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 3.791e-179
Identity = 336/691 (48.63%), Postives = 455/691 (65.85%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWL-IKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRET--QSNKKSRRNKCKKM-IVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQSSA--------------PWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMV-----ELASK----TTDCCAEKERNHAALERCHALALKESA-------STGEKTAAEEKAAKLQKLKSGFRICKPQGTFLWPNMGASN-----------GSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPY--HHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIPDT---DGAFSTAATKR-----HFLPSTVKRETASAWECIG 634
MV+EKTELNVSVR+PSI SL Y S N+ + ++YP LDE FVMGT LA KVL R+I +QEF + FWL I NS + + ++++ T +S+LK NGM+RWG+RRQV+FI + + +PQSS+S V+G+KE E E +E+ + E ++E+ +D E E T+E K+ KR +R AKKVKRE Q NK +N CK++ ++ + +RWSA+RYKLAE+NLLEVMKSKGA+F SPILRP+LR EARKRIGDTGLLDHLLKH+AGK+APGG +RFRRRHNA+G MEYWLESADLV +R+EAGVQDPYWTPPPGW GDCP+QDP+CA EL+ LK+E K++RDME++VS +EL K+RREM E + K EE ++ V + + P+KSD +S+ + + K ++QL IS+ ++ +++++ L S V +L S T+CC EKE+ E A + E+TAAE+KAAK+Q+LKSGFRICKPQGTFLWPNM ++N SS +V +VEDL +V TPPSVSSSTA APPQLP+ HHHH P+SP++P+ ERRAVTVTV + + + ++T ++ +K++++L+NLND P T DG T +T++ PS V+ E WE +G
Sbjct: 70 MVSEKTELNVSVRFPSIESLQRYFS-NR--TREMYPELDERFVMGTTLAEKVLFRKIPSQEFAEKKQSNEFWLEICNSV--SGFGDVISRKSGT-CVSELKCNGMIRWGVRRQVRFIGKHRE----NPQSSSSIVRGAKEANEEEEEEEAEVEEEEEEEDDKEAVTEETNEIGKR--KRSSRLVR----NAKKVKREKRRQINKPKTKNSCKQIAVLKNPQDRWSADRYKLAERNLLEVMKSKGAVFGSPILRPELRAEARKRIGDTGLLDHLLKHMAGKVAPGGSDRFRRRHNAEGAMEYWLESADLVDIRREAGVQDPYWTPPPGWKQGDCPTQDPICAMELKQLKKETTKLERDMEEMVSKKQMDDELAKLRREMLELLSIKQNEESQAIVVSNPSATSQNLDLDTSLLVPFKSDLDSSFITLEKYKEQLMVISEYVSRIEEEIKKLKSKVGEEETKLDSSALMVATECCTEKEKKKVGENGKQQEVGTEGADNQSKTNTAAERTAAEQKAAKIQRLKSGFRICKPQGTFLWPNMASNNNKNSNANTSMLSSSQVVVQVEDLLVVPTPPSVSSSTASAPPQLPFHRHHHHHPSSPVKPLAERRAVTVTV--SAIGNPNVSTTTTTTTTTTSTITNKTSSTLLNLNDFPTTNPGDGFCGTPSTRQTVNNTTLTPSKVEGEMGRPWEVVG 742
Match: A0A7J0GWK7 ((Similar to SWITCH1 {ECO:0000313|EMBL:GFZ15172.1}))
HSP 1 Score: 518.85 bits (1335), Expect = 4.449e-173
Identity = 317/648 (48.92%), Postives = 415/648 (64.04%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLS--LNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRETQS----NKKSRRNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQSS-----------APWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVE--------LASKTTDCCAEKERNHAALERCHALALKESASTGEKTAAEEKA-----------AKLQKLKSGFRICKPQGTFLWPNMGASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDGAFST 610
MV+EKTE+NVSVR+PSI+SL Y S + + + LDE FVMGT LA KVL R++ +QEF + + + FWL+ ++P I NK P +S++K NGMVRWG+RRQVKFI + D+ +PQSS+S V G + E ED ++E +E+ E E+ E E+ + KRK Y R T KAKK K E + NK +N C ++++ + RWSAERYKLAEKNLL+VMK+KGA+ +PILRP+LR EARKRIGDTGLLDHLLKH+AGK+APGG ERF+RRHNA+G MEYWLESADLV VR+EAGVQDPYWTPPPGW GDC +QDP+CAKELR LKEE K++RD E++VS +EE+ K+RREM+E K Q+E ++ + + AP +SD +S++V + K E+QL IS ++ +++++G L S VE L T C ++++ + + K+ S G + K AK+Q+LKSGFRICKPQGTFLWPN ++ SS +V +VEDL +V TPPSVSSSTA APPQLPYHHH P SP+RP+ ERRAV VTV T + ST + +KS T+ INLND P TDG T
Sbjct: 44 MVSEKTEVNVSVRFPSIQSLQRYFSDTIRERRTQK----LDETFVMGTKLAEKVLYRKVPSQEFAEKKHSDEFWLVISNPTRGFGDVISNK--AGPCLSEIKCNGMVRWGVRRQVKFIGKHIDN---NPQSSSSIVIGEERAKCEERKEDGQEEEPEEEEE--EDNEEAVTEETNQTGKRKRYRPRLVT-KAKKAKFEIEKRRKMNKNMAKNNCNQIVLKNPQIRWSAERYKLAEKNLLDVMKAKGAVHGNPILRPELRSEARKRIGDTGLLDHLLKHMAGKVAPGGTERFQRRHNAEGAMEYWLESADLVDVRREAGVQDPYWTPPPGWELGDCLTQDPICAKELRQLKEETKKLERDAEEMVSKKQMEEEIAKLRREMEESLPWKQQKESQAIVISNPCVTSQELDLDMAPLESDLDSSMVTLEKYEEQLMAISKYMSRIEEEIGKLKSKVEQETRSGSALMESTGWCAEKEKKEVEEKDEGLVVQKKDVGSEGGDGGDQRKTNTTEKAAEEKAAKIQRLKSGFRICKPQGTFLWPN--SNTLSSQVVVQVEDLLVVPTPPSVSSSTASAPPQLPYHHH--PASPVRPLAERRAVKVTVSTV--------GNNNLSTTTTTTTDNKSTTTFINLNDFP-TDGFSGT 666
Match: A0A5J5BAZ9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539778.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 2.601e-171
Identity = 313/616 (50.81%), Postives = 417/616 (67.69%), Query Frame = 0
Query: 34 IYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDE--DDKKAVKRKPYCLRENTRKAKKVKR---ETQSNKKSR-RNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQ-------------SSAPWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVELASK--------TTDCCAEKERNHAA-LERCHALALKESASTG--------EKTAAEEKAAKLQKLKSGFRICKPQGTFLWPNMGASNG-------SSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPIRPVPERRAVTVTVKTART--NDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIP 602
+YP LDE FVMG LAGKVL R++ +QEF + E FWL+ NS +F+ + T +S+L SNGMVRWG+RRQV+FI G +HPQSS SFV+G +EK + + ++ +D +D + E ++E T+E + KK KRK R N+R A+K K+ E Q K++ +N CK++++ + +RWSAERYKLAE+NL+ VMK+KGA++ +PILRP+LR EARKRIGDTGLLDHLLKH+AGK+APGG ERFRRRHNADG MEYWLESADLV +RK+AGV DPYWTPPPGW PGDCP+QDP+CA++L+LLKEE +KI+RDME++VS +F+EE+ K+RREM+E +KK QEE ++ V S KSD +S++ + ++QL IS+ ++GM+++ + S VE + +T+ AEKE+ E+ ALA+++ G EK AAEEKAAK Q+LKSGFRICKPQGTFLWPNM +N SS +V +VEDLF+V TPPSVSSSTA +PPQ PYHHH P SP++P+ E+RAVTVTV T + + ++ YS+T + K TSLINLND P
Sbjct: 1 MYPALDEKFVMGPKLAGKVLFREVPSQEFSEKKDLEEFWLV-NSASICGFGDVFSNKGTC--LSELNSNGMVRWGVRRQVRFI---GKHRENHPQSSPSFVEG-EEKAKEDGGDEEEDREEDGEEERDDDEEAVTEEVSETKKNSKRK----RNNSRLAEKTKKARCEKQRQSKNKTKNNCKQIVLRNPKDRWSAERYKLAEQNLVVVMKAKGAVYGNPILRPELRAEARKRIGDTGLLDHLLKHMAGKVAPGGTERFRRRHNADGAMEYWLESADLVNIRKDAGVHDPYWTPPPGWKPGDCPTQDPICARQLKLLKEEISKIERDMEEMVSKKHFEEEMAKLRREMEEMVSKKQQEESQAIVVSNPCATSQKLDFDTSLLTLKSDLDSSMDPLENCKEQLMVISNFLSGMEEKKRHVMSKVEEGTSRSGSALIVSTESYAEKEKKQLGEAEKGKALAVQQEGEEGSGDQSRAAEKRAAEEKAAKKQRLKSGFRICKPQGTFLWPNMVNNNNNNGNGMLSSQVVVQVEDLFVVPTPPSVSSSTASSPPQQPYHHH--PASPVKPLAEKRAVTVTVSTIAKAPTEGPVGDNSYSTTTTTTTDNKKKTTSLINLNDFP 603
Match: A0A2R6PLV5 ((Protein DYAD like {ECO:0000313|EMBL:PSR93315.1}))
HSP 1 Score: 516.924 bits (1330), Expect = 6.677e-171
Identity = 330/682 (48.39%), Postives = 436/682 (63.93%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRETQS----NKKSRRNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFT---KKIQEEIWSLQVQSS-----------APWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVELASK-------TTDCCAEKERNHAALERCHALALKESASTGEKTAAEEKA---------------AKLQKLKSGFRICKPQGTFLWPNMGASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDGAFSTA---------------ATKRHFLPSTVKRE 625
MV+EKTE+NVSV +PSI+SL Y S + +++YP LDE FVMGT LA KVL R++ +QEF + + + FWL+ ++P I NK P +S++K NGMVRWG+RRQVKFI + D+ PQSS+S V G ++ E ED ++E +E+ E+ E E T+E ++ KRK Y R KAKK K E + NK +N CK++++ +S RWSAERYKLAEKNLL+VMK+KGA+ +PILRP+LR EARK+IGDTGLLDHLLKH+AGK+APGG ERF+RRHNA+G MEYWLESADLV +R+EAGVQDPYWTPPPGW GDC +QDP+CAKELR LKEE K++RD+E++VS +EE+ K+RREM+E +K Q+E ++ V + P +SD +S++V + K E+QL IS ++ +++++G L S VE ++ +T CAEK++ + + K+ + G + K AK+Q+LKSGFRICKPQGTFLWPN ++ SS +V +VEDL +V TPPSVSSSTA APPQLPYHHH P SP+RP+ ERRAV VTV T N+ S+T + +KS T+ INLND P TDG FS A AT LPST K E
Sbjct: 143 MVSEKTEVNVSVIFPSIQSLQRYFS---DTISEMYPELDERFVMGTKLAEKVLYRKVPSQEFAEKKHSDEFWLVISNPNRGFGDVISNK--AGPCLSEIKCNGMVRWGVRRQVKFIGKHIDND---PQSSSSIVIGEEKAKCEERKEDGQEEEPEEEEENEEAVTEETNETNQTG-KRKRYRPRL-VPKAKKAKLEIEKRRKMNKNMAKNNCKQIVLKNSQIRWSAERYKLAEKNLLDVMKAKGAVHGNPILRPELRSEARKQIGDTGLLDHLLKHMAGKVAPGGTERFQRRHNAEGAMEYWLESADLVDIRREAGVQDPYWTPPPGWELGDCLTQDPICAKELRQLKEETKKLERDVEEMVSKKQMEEEIAKLRREMEESLDSLPRKQQKESQAIVVSNPCVTSQELDLDMVPLESDLDSSMVTLEKYEEQLMAISKYMSRIEEEIGKLKSKVEQETRSGSALMESTGWCAEKKKKEVEEKDGLVVQKKDVGTEGGGGGDQRKTNTTEKAEEEKAAEKAAKIQRLKSGFRICKPQGTFLWPN--SNTLSSQVVVQVEDLLVVPTPPSVSSSTASAPPQLPYHHH--PASPVRPLAERRAVKVTVSTIGNNNFS------STTTTTTTTDNKSTTTFINLNDFP-TDG-FSGAPSLLAANCYHHHHHNATVATVLPSTAKGE 802
Match: A0A7J0EDF6 ((Similar to SWITCH1 {ECO:0000313|EMBL:GFY84382.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.544e-167
Identity = 311/631 (49.29%), Postives = 416/631 (65.93%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRETQSNKK----SRRNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQSSAPWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVE--------LASKTTDCCAEKERNHAALERCHALALKESASTGEKTAAEEKA-----------AKLQKLKSGFRICKPQGTFLWPNMGASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYS-STAIVASPKSKSNTSLINLNDIPDTD 605
+V+EKTE+NVSVR+PSI+SL +Y S + ++YP LDE FVMGT LA KVL R++ +QEF + + + FWL+ ++ I NK T L ++K +GMVRWG+RRQVKFI + D+ +PQ S+SFV+ ++EK + E E++ E +D++ E EE T K+ KRK Y R KAKK K E + ++ +N CK++++ + RWSAERYKLAEKNLLEVMK+KGA+ +PILRP+LR EARK IGDTGLLDHLLKH+AGK APGG ERFRRRHNA+G MEYWLESADLV +R EAGVQDPYWTPPPGW GDC +QDP+CAKELR LKE+ K++RD+E++VS +EE+ K+RREM+E F++ Q+E ++ P +SD +S+LV++ K E+QL I+ + +++++G L S VE L T C ++++ + A+ KE + G+ + K AK+Q+LKSGFRICKPQGTFLWPN SS +V +VEDL +V TPPSVSSSTA AP QLPYHHH P SP++P+ ERRAV VTV T + N +S +T + +S T+LINLND P TD
Sbjct: 65 IVSEKTEVNVSVRFPSIQSLQSYFS---DTIREMYPELDERFVMGTKLAEKVLYRKVPSQEFVEKKHSDEFWLVISNSNRGFGDVISNKAGTCLL--EIKCDGMVRWGVRRQVKFIGKHVDN---NPQPSSSFVR-AEEKAKCEEHEEDGQEEEDDNEEAVTEETNET----KQTGKRKRYSPR-LVPKAKKAKLEIEKRRQINKNKTKNNCKQIVLKNPQIRWSAERYKLAEKNLLEVMKAKGAVHGNPILRPELRSEARKLIGDTGLLDHLLKHMAGKAAPGGTERFRRRHNAEGAMEYWLESADLVNIRSEAGVQDPYWTPPPGWELGDCLTQDPICAKELRQLKEKTKKLERDVEEMVSKKQMEEEIAKLRREMEEVFSRNQQKESQAIVDLDMVPLESDLDSSLVKLEKYEEQLMAITKYVNRIEEEIGKLKSKVEQETRSGSALMESTGWCAEKEKKEVEEKDGGLAVQKKEGGTEGDGGGDQRKTNTTEKAAEEKAAKIQRLKSGFRICKPQGTFLWPNRNTL--SSQVVVQVEDLLVVPTPPSVSSSTASAPSQLPYHHH--PASPVKPLAERRAVKVTVST-------VGNTNFSTTTTTTTTTTDESTTTLINLNDFPTTD 670
Match: A0A834LTY5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7148515.1}))
HSP 1 Score: 498.434 bits (1282), Expect = 1.068e-165
Identity = 303/636 (47.64%), Postives = 399/636 (62.74%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFW-LIKNSPEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSKEKLEHESDEDNKDENDDEDNEDGEEEREYTDEDDKKAVKRKPYCLRENTRKAKKVKRETQSN-KKSRRNKCKKMIVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVS--NFKEELKKVRREMDEQFTKKIQEEIWSLQVQSSAPWKSDFESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMV--ELASK-----TTDCCAEKERNHAALERCHA------------------LALKESASTGEKTAAEEKAA-KLQKLKSGFRICKPQGTFLWPNMGASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQLPYHHHHPPTSPIRPVPERRAVTVTVKTARTNDQQIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDG 606
+V+EKTELN+SVR+PS +SL YLS T++ P LDE FVMGT LA KVL RQ+ ++EF + + FW LI NS I NK + +S+LK NGM RWG+R QVKF+ R +++ + + ++E+ E+DE K++ KRK C K KK K E QS K+R+ CK+ I RWSAERYK+AEKNLLEVMK+KGA++KSPILRP+LRLEARKRIGDTGLLDHLLKH+AGK+APGG ERFRRRHNA+G EYWLESADLV +R+EAGVQDPYWTPPPGW GDCPSQDP+CAKE++ LKEE +K++RD+E++VS +EE+ K+RRE++E+ +KK Q+E Q + P + ++ + K +++ +S ++ +++++G L S V E+ S + + C EKE+ A +A KE+ STG A EEKAA K+Q+ KSGFRICKPQGTFLWPNM SS +V EDL MV TPPSVSSS A APPQLPYHHH+ P P++P+ ERRA+ VTV + I + +S+T + +K+ TSL+NLND P G
Sbjct: 73 VVSEKTELNISVRFPSTQSLQRYLS---EGITEMCPELDERFVMGTKLAEKVLFRQVRSREFTEKKNSKDFWQLISNSDCGIGDFVISNKAGSC--LSELKCNGMPRWGVRHQVKFVYRHTETNEDELEENEE----AEEENNGETDESRKND------------------------KRK-RCSSRLVPKGKKAKLENQSQINKTRKKNCKQ------IGRWSAERYKVAEKNLLEVMKAKGAVYKSPILRPELRLEARKRIGDTGLLDHLLKHMAGKVAPGGAERFRRRHNAEGVTEYWLESADLVDIRREAGVQDPYWTPPPGWKTGDCPSQDPICAKEMKELKEETSKLERDLEELVSKKQMEEEIAKLRREIEEELSKKQQQE-----SQETVPL-----NPMITLEKYMEEVMGVSGYVSRIEEEIGKLKSKVREEIKSDSALMVSAESCDEKEKKKVGKPLVVAQQKEAVGTEGRGDQGKTNIAEKEAESTG---AGEEKAAKKIQRPKSGFRICKPQGTFLWPNM----ASSQVVVHAEDLLMVPTPPSVSSSNASAPPQLPYHHHYRPY-PVKPLAERRALKVTVSS-------IGDTNFSTTMTTTAGTNKTTTSLMNLNDFPSHPG 643
Match: A0A1S3ZKP1 ((protein DYAD-like {ECO:0000313|RefSeq:XP_016465105.1}))
HSP 1 Score: 483.797 bits (1244), Expect = 2.308e-158
Identity = 330/757 (43.59%), Postives = 449/757 (59.31%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNS---PEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGS---KEKLEHESDEDNKDENDDEDNE--DGEEERE------------YTDEDDKKAVKRKPYCLRENTRKAKKVKRE--TQSNKKSRRNKCKKM-IVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVSN---FKEELKKVRREMDE-QFTKKIQEEI--------WSLQVQSSAPWKSDF-----ESALVQVNK---QEKQLTDISDTITGMKDQM----GTLSSMVELASKTTDCCAEKERNHAALERCHALALKESASTGEKT--AAEEKAAKLQKLKSGFRICKPQGTFLWPNM------GASNGSSPLVFEVEDLFMVHTPPSVSSSTAL-APPQLPYHHH--HPPTSPIRPVPERRAVTVTVKTARTNDQ-QIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDG-AFSTAATKR----------HFLPSTVKRETAS-AWECIGSSRCSNMSAFVAECTVNAGETSQQGKRECTSSTLCLSSAAGHRMPLSAANST 686
MV+E+T LNV+VRYPS++SL Y S +K ++YP DE FVMGT LA KVL RQ+ +QEF + + FWL+ + PAA GI +SQLK NGMV WGIRRQVKF+ R D S ++ +SS+SFV+G K K +S+ED ++E DDE+ + DGE ++ E K +KRK Y R T K K + NK ++NKC+ + + +RWSAERY+LAEKNL+EVMK+KGA+ +PI+RP+LR EARKRIGDTGLLDHLLKH+AGK+APGG ERFRRRHNA+G MEYWLESADLV +RKEAGV DPYW PPPGW GD P Q P+CA+E + LK+E +KRD E++VS+ +EE+ +++R ++E +F KK + I + Q+ + SDF E L V+K +EK ++ + + G K Q+ + +V + K A+ +++ + L ++A+ +KT AEEKAAK+Q+LKSGFRICKPQG+FLWPNM N S+ ++ +VED+ MV TPPSVSSSTA+ AP LPY+ P SP++PVPERRAVTVTV T + + + ++ YS+ S T+LINLND+P + G F A T R H LPS V + S W+ R S VA ++G+ QQ + C+SS L A + L+ ++T
Sbjct: 81 MVSERTVLNVAVRYPSMQSLQTYFSNSK---REMYPAFDEKFVMGTALASKVLLRQVPSQEFAEKKHLHSFWLVNYTTLGAVPAAKNGI--------CLSQLKVNGMVTWGIRRQVKFLGRHEDQS-NNTKSSSSFVQGEEIPKLKTPEKSEEDEEEEEDDEEEDEIDGESVKQKDEEAEEEDDEEAVTEKTNKNLKRKRYSFRTTTVKKKAKTTRGPEKKNKIKKKNKCRVLSVYKDPKDRWSAERYELAEKNLMEVMKAKGAMANNPIIRPELRAEARKRIGDTGLLDHLLKHLAGKIAPGGTERFRRRHNAEGAMEYWLESADLVNIRKEAGVNDPYWIPPPGWKLGDSPIQHPICAQEFKHLKDEIFVLKRDWEEMVSSKEQLEEEVGRLKRRIEELEFKKKQSQAIEASKTMEKYKKQLMMTT---SDFMAKMEEKCLGLVSKLEEKEKSISALMLSTEGKKKQVEPEKQGVQEVVTVEEKKRSKAADDDQSKELIAVDPKL---KAATKAQKTTPTAEEKAAKIQRLKSGFRICKPQGSFLWPNMVRNNKNNGGNMSNQVMVQVEDVHMVPTPPSVSSSTAITAPSLLPYYQQDKQQPVSPVKPVPERRAVTVTVSTISSETRYEAGDNNYST--------SNKTTTLINLNDVPFSTGEVFRQAPTSRQTITTTTVMPHSLPSPVHGDKMSKPWQASRDDRASQ----VAMSEKDSGQ--QQASKCCSSSATSLPQGAASWLVLATPSNT 805
Match: A0A1U7VUD6 ((protein DYAD-like isoform X1 {ECO:0000313|RefSeq:XP_009768556.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 1.978e-157
Identity = 325/751 (43.28%), Postives = 443/751 (58.99%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNS---PEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSK-EKL---EHESDEDNKDENDDEDNEDGEEEREY------------TDEDDKKAVKRKPYCLRENTRKAKKVKRE--TQSNKKSRRNKCKKM-IVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVSN---FKEELKKVRREMDE-QFTKKIQEEIWSLQVQSSAPWK-----SDF-----ESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVELASKTTDCCAEKERNHAALERCHALALKE----SASTGEKT--AAEEKAAKLQKLKSGFRICKPQGTFLWPNM------GASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQ-LPYHHHHP---PTSPIRPVPERRAVTVTVKTARTNDQ-QIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDG-AFSTAATKR----------HFLPSTVKRETAS-AWECIGSSRCSNMSAFVAECTVNAGETSQQGKRECTSSTLCLSSAAGHRMPLSAANST 686
MV+E+T LNV+VRYPS++SL Y S +K ++YP DE FVMGT LA KVL RQ+ +QEF + + FWL+ + PAA GI +SQLK NGMV WGIRRQVKF+ R D S ++ +SS+SFV+G + KL E +ED +D++++ED DGE ++ E K +KRK Y R T K K + NK ++NKC+ + + +RWSAERY+LAEKNL+EVMK+KGA +PI+RP+LR EARKRIGDTGLLDHLLKH+AGK+APGG ERFRRRHNA+G MEYWLESADLV +RKEAGV DPYW PPPGW GD P Q P+C +E + LK+E +KRD E++ S+ +EE+ +++R ++E +F KK + I + + + SDF E L V+K E++ IS + +++ + + + EK+R+ A ++ + E +A+ +KT AEEKAAK+Q+LKSGFRICKPQG+FLWPNM N S+ ++ VED+ MV TPPSVSSSTA+A P LPY+ H+ P SP++PVPERRAVTVTV T + + + ++ YS+ S T+LINLND+P + G F A T R H L S V + S W+ R S VA ++G+ QQ + C+SS L A + L+ ++T
Sbjct: 102 MVSERTVLNVAVRYPSMQSLQTYFSNSK---REMYPAFDEKFVMGTALASKVLLRQVPSQEFAEKKHLHSFWLVNYTTLGAVPAAKNGI--------CLSQLKVNGMVTWGIRRQVKFMGRHEDQS-NNTKSSSSFVQGEEIPKLKTPEKSEEEDEEDDDEEEDEIDGESVKQEDEEAEEDDDEEAVTEKTNKNLKRKRYSFRATTVKKKAKTTRGPEKKNKIKKKNKCRVLSVYKDPKDRWSAERYELAEKNLMEVMKAKGATANNPIIRPELRAEARKRIGDTGLLDHLLKHLAGKIAPGGTERFRRRHNAEGAMEYWLESADLVNIRKEAGVNDPYWIPPPGWKLGDSPIQHPICTQEFKHLKDEIFVLKRDWEEMASSKEQLEEEVGRLKRRIEELEFKKKQSQAIETAKTMEKYKKQLMMTTSDFMAKMEEKCLSLVSKLEEKEKSISTLMLSTEEKKKQVEPEKQGVQEVV-TVGEKKRSKVADDQSKEVIAVEPKLKAATKAQKTTPTAEEKAAKIQRLKSGFRICKPQGSFLWPNMVRNNKNNGGNMSNQVMVLVEDVHMVPTPPSVSSSTAIAAPSLLPYYQHNKQQQPVSPVKPVPERRAVTVTVSTISSETRYEAGDNNYST--------SNKTTTLINLNDVPFSAGEGFQQAPTSRQTITTTTVMPHTLSSPVNGDKMSKPWQASRDDRASQ----VALSGKDSGQ--QQASKCCSSSATSLPQGAASWLVLATPSNT 825
Match: A0A1U7VKP1 ((protein DYAD-like isoform X2 {ECO:0000313|RefSeq:XP_009768557.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 2.514e-157
Identity = 325/751 (43.28%), Postives = 443/751 (58.99%), Query Frame = 0
Query: 1 MVTEKTELNVSVRYPSIRSLCNYLSLNKMSSTDIYPFLDEVFVMGTHLAGKVLSRQISAQEFDDNNYFEGFWLIKNS---PEPAALRGIFNKETTTPLMSQLKSNGMVRWGIRRQVKFINRQGDSSTSHPQSSTSFVKGSK-EKL---EHESDEDNKDENDDEDNEDGEEEREY------------TDEDDKKAVKRKPYCLRENTRKAKKVKRE--TQSNKKSRRNKCKKM-IVGSSINRWSAERYKLAEKNLLEVMKSKGALFKSPILRPDLRLEARKRIGDTGLLDHLLKHVAGKLAPGGVERFRRRHNADGQMEYWLESADLVKVRKEAGVQDPYWTPPPGWTPGDCPSQDPLCAKELRLLKEENAKIKRDMEDIVSN---FKEELKKVRREMDE-QFTKKIQEEIWSLQVQSSAPWK-----SDF-----ESALVQVNKQEKQLTDISDTITGMKDQMGTLSSMVELASKTTDCCAEKERNHAALERCHALALKE----SASTGEKT--AAEEKAAKLQKLKSGFRICKPQGTFLWPNM------GASNGSSPLVFEVEDLFMVHTPPSVSSSTALAPPQ-LPYHHHHP---PTSPIRPVPERRAVTVTVKTARTNDQ-QIDNHGYSSTAIVASPKSKSNTSLINLNDIPDTDG-AFSTAATKR----------HFLPSTVKRETAS-AWECIGSSRCSNMSAFVAECTVNAGETSQQGKRECTSSTLCLSSAAGHRMPLSAANST 686
MV+E+T LNV+VRYPS++SL Y S +K ++YP DE FVMGT LA KVL RQ+ +QEF + + FWL+ + PAA GI +SQLK NGMV WGIRRQVKF+ R D S ++ +SS+SFV+G + KL E +ED +D++++ED DGE ++ E K +KRK Y R T K K + NK ++NKC+ + + +RWSAERY+LAEKNL+EVMK+KGA +PI+RP+LR EARKRIGDTGLLDHLLKH+AGK+APGG ERFRRRHNA+G MEYWLESADLV +RKEAGV DPYW PPPGW GD P Q P+C +E + LK+E +KRD E++ S+ +EE+ +++R ++E +F KK + I + + + SDF E L V+K E++ IS + +++ + + + EK+R+ A ++ + E +A+ +KT AEEKAAK+Q+LKSGFRICKPQG+FLWPNM N S+ ++ VED+ MV TPPSVSSSTA+A P LPY+ H+ P SP++PVPERRAVTVTV T + + + ++ YS+ S T+LINLND+P + G F A T R H L S V + S W+ R S VA ++G+ QQ + C+SS L A + L+ ++T
Sbjct: 101 MVSERTVLNVAVRYPSMQSLQTYFSNSK---REMYPAFDEKFVMGTALASKVLLRQVPSQEFAEKKHLHSFWLVNYTTLGAVPAAKNGI--------CLSQLKVNGMVTWGIRRQVKFMGRHEDQS-NNTKSSSSFVQGEEIPKLKTPEKSEEEDEEDDDEEEDEIDGESVKQEDEEAEEDDDEEAVTEKTNKNLKRKRYSFRATTVKKKAKTTRGPEKKNKIKKKNKCRVLSVYKDPKDRWSAERYELAEKNLMEVMKAKGATANNPIIRPELRAEARKRIGDTGLLDHLLKHLAGKIAPGGTERFRRRHNAEGAMEYWLESADLVNIRKEAGVNDPYWIPPPGWKLGDSPIQHPICTQEFKHLKDEIFVLKRDWEEMASSKEQLEEEVGRLKRRIEELEFKKKQSQAIETAKTMEKYKKQLMMTTSDFMAKMEEKCLSLVSKLEEKEKSISTLMLSTEEKKKQVEPEKQGVQEVV-TVGEKKRSKVADDQSKEVIAVEPKLKAATKAQKTTPTAEEKAAKIQRLKSGFRICKPQGSFLWPNMVRNNKNNGGNMSNQVMVLVEDVHMVPTPPSVSSSTAIAAPSLLPYYQHNKQQQPVSPVKPVPERRAVTVTVSTISSETRYEAGDNNYST--------SNKTTTLINLNDVPFSAGEGFQQAPTSRQTITTTTVMPHTLSSPVNGDKMSKPWQASRDDRASQ----VALSGKDSGQ--QQASKCCSSSATSLPQGAASWLVLATPSNT 824
| Match Name | Stats | Description |
|---|---|---|
| A0A4S4EMR0 | E-Value: 2.264e-179, PID: 48.77 | (Uncharacterized protein {ECO:0000313|EMBL:THG1794... [more] |
| A0A7J7I456 | E-Value: 3.791e-179, PID: 48.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5959... [more] |
| A0A7J0GWK7 | E-Value: 4.449e-173, PID: 48.92 | (Similar to SWITCH1 {ECO:0000313|EMBL:GFZ15172.1})[more] |
| A0A5J5BAZ9 | E-Value: 2.601e-171, PID: 50.81 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| A0A2R6PLV5 | E-Value: 6.677e-171, PID: 48.39 | (Protein DYAD like {ECO:0000313|EMBL:PSR93315.1})[more] |
| A0A7J0EDF6 | E-Value: 1.544e-167, PID: 49.29 | (Similar to SWITCH1 {ECO:0000313|EMBL:GFY84382.1})[more] |
| A0A834LTY5 | E-Value: 1.068e-165, PID: 47.64 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7148... [more] |
| A0A1S3ZKP1 | E-Value: 2.308e-158, PID: 43.59 | (protein DYAD-like {ECO:0000313|RefSeq:XP_01646510... [more] |
| A0A1U7VUD6 | E-Value: 1.978e-157, PID: 43.28 | (protein DYAD-like isoform X1 {ECO:0000313|RefSeq:... [more] |
| A0A1U7VKP1 | E-Value: 2.514e-157, PID: 43.28 | (protein DYAD-like isoform X2 {ECO:0000313|RefSeq:... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
