Resource Type:
Polypeptide
Name:
DCAR_009308
Identifier:
DCAR_009308.mRNA-protein
Sequence:
MSKDNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQ
SSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKH
AECVKREDEGKKREAELYLQRARYLEGMLEHSERTAGSVTASSDFPRSSC
TGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFG
LTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISS
QSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVK
CLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPF
LIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNA
MGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPL
FVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLC
DDILKLYSLKLS*
Sequence Length:
513
Sequence Checksum:
b615d0624f81871caebd8ab67a7a1135
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_009308, derives from mRNA, DCAR_009308. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2T7 ((Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|EMBL:MPA61753.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA61753.1}) (Fragment))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 300/520 (57.69%), Postives = 386/520 (74.23%), Query Frame = 0
Match: A0A5B7B2T7 ((Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|EMBL:MPA61753.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA61753.1}) (Fragment))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 300/520 (57.69%), Postives = 386/520 (74.23%), Query Frame = 0
Query: 4 DNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQ------RARYLEGML-EHSERTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKL 511
+ +EIDGL C ICME WT+ G HQ+CCLPCGH+YGLSCI++W++Q +S KCPQC R CSLKDVR++YAS+IV VD+E QKKV+ LEAKCASL+ K A K+E E + REA L+LQ R YLE +L + R G +TAS + G +F + G S SF LQKE ++G R FDVDAS Q+L+IARRL+GMGG+ LTK+SL+APH+R ++QLP +TKAV+DLR SP RL L+A LGKKLS++S +SN +L+YDLPAAAWSCSWD++ S+Y YAGLQNGMLLVFDMRQT PV+ + G+T PIH+++S+SP+ PSGVR +LTASS+G C+WNFGG+ ERPFL+PGS+N+GVC+SLA +++IVAS+RPKV + + SQ TPST+ MG + GSHV YKR S+ +QKLGST ANVNDIRLPKSAI+D R N PLF SGDE E+ LQ LPSL+ +Q L +K P+RDVK+TH ++ +L CL +D + L+S L
Sbjct: 157 NRSEIDGLFCTICMEAWTNGGDHQICCLPCGHLYGLSCIKRWLQQHRSRAKCPQCNRKCSLKDVRVIYASQIVAVDQESQKKVKSLEAKCASLEKKDANWCKKEVEWQSREANLHLQMHELMERTSYLESLLGDMQSRPPGLLTASGACQEHAIFGHNLDSEFDRQGSSGSFVLQKELLVDGTRFFDVDASSQILIIARRLSGMGGMHVLTKMSLIAPHERENIQLPVSTKAVKDLRVSPHGRLALLAFLGKKLSVLSMESNNIILSYDLPAAAWSCSWDLNSSHYVYAGLQNGMLLVFDMRQTIRPVESMIGLTSYPIHTVHSLSPDLTLPSGVRPLLTASSVGLCQWNFGGIKERPFLVPGSENQGVCISLAYCPGSNDIVASFRPKVEFSSDIAFSQPSLTPSTSLMGQGIQGSHVHYKRVGSRGYQKLGSTYANVNDIRLPKSAIID-RENHNPLFASGDEVTCELVLQELPSLMVLQRLKSRKHPIRDVKYTHTLSTGLLSCLSEDTIHLFSANL 675
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZNB6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 293/520 (56.35%), Postives = 381/520 (73.27%), Query Frame = 0
Match: A0A5J4ZNB6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 293/520 (56.35%), Postives = 381/520 (73.27%), Query Frame = 0
Query: 4 DNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELY------LQRARYLEGML-EHSERTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKL 511
+ ++IDGL CPICME WT+ G HQ+CCLPCGH+YGLSCI++W++Q +SS KCPQC R CSLKDVR++YAS+IVVVD+E QKKV+ LEAKCASL+ K A K+ E +KREA L+ ++R YLE +L + R G + + + G +F + G S F LQK+ ++GARVFDVDAS Q+L+IARRL GMGG+ LTK+SL+APH+ ++QLP +TKAV+DLR SP RL L+A LGKKLS++S++SN +L+YDLPAAAWSCSWD++ S+Y YAGLQNGMLLVFDMRQT PV+ L G+T N IH+++S+SP+ SGVRT+LTASS+G CEWNFGG++ERPFL+PGS+N+GVC+SLAC +++IVAS+RPKV + S SQ PS MG V GSHV YKR S+ +QKLGST ANVNDIRLPK + + R N PLF GDE E+ LQ LPSL+ +Q L + P+ DVK+TH ++ +L CL +D L+L+S L
Sbjct: 121 NRSQIDGLFCPICMEAWTNAGDHQICCLPCGHLYGLSCIKRWLQQHRSSAKCPQCNRKCSLKDVRVIYASQIVVVDQESQKKVKTLEAKCASLEKKDAVWCKKAIEWQKREANLHQQIDQLMERTSYLEHLLGDMQNRPTGILIGNGACQEHAILGHNLDSEFGRHGFSGGFVLQKDLLVDGARVFDVDASSQILIIARRLAGMGGMHVLTKMSLIAPHETENIQLPVSTKAVKDLRVSPHGRLTLLAFLGKKLSVLSTESNNIILSYDLPAAAWSCSWDLNSSHYLYAGLQNGMLLVFDMRQTTRPVESLIGLTGNLIHTIHSLSPDLTVRSGVRTLLTASSVGLCEWNFGGIEERPFLVPGSENQGVCISLACCRYSNDIVASFRPKVEFSSDISISQ----PSL-TMGQGVQGSHVLYKRLGSRGYQKLGSTYANVNDIRLPKKSTIVARENQDPLFAFGDEITCELVLQELPSLMDLQRLRSRMHPIHDVKYTHTLSTGLLSCLSEDTLQLFSANL 635
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RS83 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32875.1}))
HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 283/513 (55.17%), Postives = 373/513 (72.71%), Query Frame = 0
Match: A0A2R6RS83 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32875.1}))
HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 283/513 (55.17%), Postives = 373/513 (72.71%), Query Frame = 0
Query: 7 EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQ------RARYLEGMLEHSER------TAGSVTASSDFPRSSCTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLY 507
EIDGL CPICM+ WT+ G HQVCCLPCGH+YG SCI++W++QR++S KCPQC R CS+KDVR++YA +IV VD +L+KKV LEAKCAS + K E +E E +++EA L+ Q R YLE +LE ++ A + P + +FR G S F LQ+E ++GA+ FDVDAS Q ++ARRL GMGG+ LTK+SL+APH+R ++QLP NTKA RD+R +P RL+L+ASLGKKLS++S +SN TVL+YDLPAAAWSCSWD+S S+Y Y GLQNG LLVFDMRQT P++ G+TCNPIH+++S+ P+ PSGVR++LTASS+G C WNFGG +ERP L+P S+N+GVC++LA S+++IVAS+RPK+ + + SQ TP+T+ MG V GSH+ YK ++C+QKLGST ANVNDIRL KSAI+D +N+D LF S +EA E+ LQ LPS + VQ L QK PVRDVK+TH S +L CL +D L+L+
Sbjct: 116 EIDGLFCPICMDAWTNGGEHQVCCLPCGHLYGASCIKRWLQQRKNSGKCPQCNRKCSMKDVRVIYARQIVAVDHQLRKKVPALEAKCASFEKKDNEWQMKEKEWQRKEAYLHTQVHQLTERTYYLEQLLEETQNRPSRLFNANESSLEQFMPGHNLDLEFRNKGPSGKFVLQEELQVDGAKFFDVDASSQCFIVARRLFGMGGMHVLTKVSLIAPHERENIQLPVNTKAARDIRIAPNGRLVLLASLGKKLSVMSMESNNTVLSYDLPAAAWSCSWDLSSSHYVYTGLQNGKLLVFDMRQTLRPLESFDGLTCNPIHTVHSLLPDLTLPSGVRSLLTASSVGLCHWNFGGNEERPSLVPESENQGVCIALAYCPSSNHIVASFRPKIEIACDMAVSQPSLTPATSLMGQGVQGSHILYKNVGNRCYQKLGSTSANVNDIRLAKSAIIDRQNHDV-LFASSNEATCELFLQELPSFMVVQRLKSQKHPVRDVKYTHDLCSGLLSCLSEDKLQLF 627
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HPI1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 287/511 (56.16%), Postives = 381/511 (74.56%), Query Frame = 0
Match: A0A7J7HPI1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 287/511 (56.16%), Postives = 381/511 (74.56%), Query Frame = 0
Query: 6 NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQRARYLEGMLEHSE-RTAGSVTASSDFPRSSCTGQ-----FRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 510
+EIDGL CPICME W++ G HQVCCLPCGH+YG SCI+KW++QR++S KCPQC R C+LKDVR++YAS+IVV+D +LQKKVQ LEAKC S + K + +E + ++RE +L+LQR YLE +L ++ R +G + S + G F G S++F LQ ++GA+ FDVDAS Q+ +IARRL GMGG+ LTK+SL+APH+R ++ LP +TKAVRDLR +P+ RL L+ASLGKKLS+IS++SN V++YDLPAAAWSCSWD++ S+Y Y+GLQNGMLLVFDMRQT +P++ L G+TCNPIH+++S+SP+S PSG R++LTASSIG C+WNFGGV+E PFL+P S+N+GVC+ LA SN++IVAS+RPKV M N + SQ T +++ MG + GS++ +K ++ FQKLGST VNDIRLPKS IVD R N P F G E E+ LQ LPS + VQ L QK P+RDVK+TH +S +L CL +DIL+L+S K
Sbjct: 126 SEIDGLFCPICMEAWSNGGDHQVCCLPCGHLYGASCIKKWLQQRKNSGKCPQCNRKCTLKDVRVIYASQIVVIDHQLQKKVQSLEAKCTSFEKKDEDWHNKEVKWRRREVDLHLQRTSYLERLLGDAQNRPSGLFSGSQGSQEQAMLGHDLDFGFGGQGSSSNFVLQ----VDGAKFFDVDASSQIFIIARRLAGMGGMHVLTKMSLIAPHERENIDLPVSTKAVRDLRVAPQGRLALLASLGKKLSVISTESNNVVISYDLPAAAWSCSWDLNSSHYIYSGLQNGMLLVFDMRQTLKPMESLTGLTCNPIHTVHSLSPDSTLPSGARSLLTASSIGLCQWNFGGVEEGPFLVPESENQGVCIGLAYCPSNNHIVASFRPKVEMSNDMAVSQPSLTAASSLMGQGIQGSNILFKSLGNRRFQKLGSTYMTVNDIRLPKSVIVD-RQNHNPQFAYGSEVACELVLQELPSFMDVQRLKSQKHPIRDVKYTHDLSSGLLSCLSEDILQLFSSK 631
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TIS4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0
Identity = 294/518 (56.76%), Postives = 380/518 (73.36%), Query Frame = 0
Match: D7TIS4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0
Identity = 294/518 (56.76%), Postives = 380/518 (73.36%), Query Frame = 0
Query: 5 NNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQ-RQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQ------RARYLEGML-EHSERTAGSVTA-SSDFPRSSCTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRD-RLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS 512
++IDGLCCPICME WTS G HQVCCLPCGHIYG+SCI+KW +Q +SS KCPQCKR C+L++VR LYASR+V VDE+L+KK++ LEAKCASL+ K+A+ +E + KREA+L+LQ R YLE + E R +G V A +F + F + G S +F LQKE ++GAR FD+DASG++L+IARRL+G GG LTK+SL++PH+ D+ LPS TKAV+DLR SP RL L+ASLGKKLS++S +SN +LTYDLP AAWSCSWD++ S+Y YAGLQNGML+VFDMRQT P+ ++G T NPIH++ SV S PSGV T+L+ASS+G C+WNFGG +ERPFL+P + N GVC+SLA S+ NIV+++RPKV M N+ + SQ TPS MG + GSHV KR C+QKLGS+CANVNDIRL +SAI+D++++ PLFVSGDE E+ LQ LPSL Q L QK P+RDVK++H + S+L CL +D L+ +S K S
Sbjct: 101 QDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQQCGRSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNADWCMKESDWHKREADLHLQVQQLIERTTYLERLSSEMHGRGSGLVAARGHNFAEN-----FGRRGSSCNFVLQKELQVDGARYFDIDASGEILVIARRLSGTGGTHVLTKMSLISPHEIEDILLPSGTKAVKDLRVSPAKCRLALLASLGKKLSVLSMESNNVILTYDLPTAAWSCSWDLNSSHYMYAGLQNGMLMVFDMRQTARPMAEISGPTSNPIHTIQSVLHNSTLPSGVSTLLSASSVGLCQWNFGGSEERPFLVPETKNHGVCISLAHCPSSDNIVSTFRPKVEMSNEIAVSQYSLTPSV--MGQGMQGSHVLLKRVGGNCYQKLGSSCANVNDIRLQRSAIIDLQSHH-PLFVSGDEITHELVLQELPSLRVSQRLKSQKHPLRDVKYSHDLSPSLLCCLSEDTLQFFSAKFS 610
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UA71 ((E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO:0000313|RefSeq:XP_011094596.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 290/518 (55.98%), Postives = 374/518 (72.20%), Query Frame = 0
Match: A0A6I9UA71 ((E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO:0000313|RefSeq:XP_011094596.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 290/518 (55.98%), Postives = 374/518 (72.20%), Query Frame = 0
Query: 7 EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAEL------YLQRARYLEGMLEHSERTAGSVTASSDFPRSS------CTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVD--IRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 510
+IDGL C IC E W+S G H VCCLPCGHIYGL+CI+KW+R RQ S KCPQCK+ C +KD+RLLYASRIV +D ELQKKVQ LEAKC+SL+ K AE K+E E KKREA L QR L +LE +ERTA ++AS R QF GCSN F +QK+F ++GAR+FD+D+SGQ+ +IARRL+GMGG LTK+SL++ +D+ D+ LP NTKAV+DL+ SP RL+L+ASLGKKLS++S++SN VLTY+LPAAAWSCSWDIS S+YAYAGLQNG +L FDMR T V+ +G+TCNPIH+LYS+ P+S SGVR++L+ASS+G C+WNFGG ++RP+LIP SD GVC+SLA S+ +IVASYRPK+ + S P+ A G GSHV Y++ ++KLG+TCANV+DIRLPKS I+D RN P+F S DE E+ LQ LPSL+ V+HL P+K+P+RDVK+ +S +L CL +D L+L++ K
Sbjct: 131 DIDGLFCSICFEAWSSGGDHHVCCLPCGHIYGLACIKKWLR-RQGSSKCPQCKKKCGIKDIRLLYASRIVAIDGELQKKVQSLEAKCSSLEKKKAEWSKKEVEWKKREASLRRQVQDLEQRNHDLADLLEDTERTASGLSASGCNSRGESILGFDANAQFNMRGCSNKFIMQKDFQVDGARLFDIDSSGQIFVIARRLSGMGGAHVLTKVSLLSNNDKEDIWLPENTKAVKDLQISPHARLVLLASLGKKLSVLSTESNNAVLTYELPAAAWSCSWDISSSHYAYAGLQNGTVLQFDMRYTMRHVQSFSGLTCNPIHTLYSLLPKSSLSSGVRSVLSASSLGLCQWNFGGSEDRPYLIPESDEHGVCISLAFCKSSDDIVASYRPKIEI----SGDLDFCQPTLTAPGQRTRGSHVLYRKMGC-TYKKLGATCANVSDIRLPKSTIIDGVYRN---PVFASSDELTSELVLQELPSLMVVEHLKPKKYPIRDVKYHRQLSSGLLSCLTEDSLQLFTAK 639
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H443 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7147892.1}))
HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 287/534 (53.75%), Postives = 379/534 (70.97%), Query Frame = 0
Match: A0A834H443 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7147892.1}))
HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 287/534 (53.75%), Postives = 379/534 (70.97%), Query Frame = 0
Query: 6 NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQ-----------------------RARYLEGMLEHSE-RTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 510
+EIDGL CPICME WTS G HQVCCLPCGH+YG SCI++W++QR++S KCPQC R +LKDVR++YA +IV +D+E+Q KV+ LEAKCASL+ K+ + KRE E +KRE L LQ R YLE +L ++ R G + A + G ++ G S++F LQKE ++GA++FDVDAS Q+ +IA+RL+GMGG+ L K+SL+APH R ++ LP NTKAVRDLR +P RL L+ASLGKKLSIIS +SN TVL+YDLPAAAWSCSWD++ S+Y Y GLQNGMLLVFDMRQT +PV+ + G+T NPIH+++S+ P+S PSGVR++LTASS G C+WNFG ++ER FLIPGS+N+GVC++LA S+++IVAS+RPK+ M N SQ +P T+ G V G+HV YK + C+QKLGSTCA+VND+RLP+SAI+ +N F S +E E+ LQ LPS + VQHL Q P+RDVK+TH +S +L CL +D L+L+S K
Sbjct: 114 SEIDGLFCPICMEAWTSGGDHQVCCLPCGHLYGASCIKRWLQQRKNSGKCPQCNRKSTLKDVRVIYAQQIVAIDQEIQTKVRSLEAKCASLEEKNNDWQKRECEWRKREVALDLQVHQLREASSILFIGLPFQMSCISRKSYLERLLGDAQNRPLGLLNAHEGCTEQAMFGRNLDLKYCGQGSSSNFILQKELQVDGAKLFDVDASSQIGIIAQRLSGMGGMHVLAKMSLIAPHGRENIALPVNTKAVRDLRVAPHGRLALLASLGKKLSIISMESNNTVLSYDLPAAAWSCSWDLNSSHYVYTGLQNGMLLVFDMRQTLKPVESVVGLTSNPIHTMHSLLPDSTLPSGVRSLLTASSGGLCQWNFGAIEERTFLIPGSENQGVCIALAYCPSSNHIVASFRPKIEMSNDTVVSQPSLSPVTSLRGKGVWGTHVLYKALGNSCYQKLGSTCASVNDVRLPRSAIIYNQNLQ---FASTNEVTCEVVLQELPSFMVVQHLKSQMHPIRDVKYTHDLSSGLLSCLSEDRLQLFSRK 644
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U5W2 ((E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO:0000313|RefSeq:XP_011094594.1}))
HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 290/519 (55.88%), Postives = 374/519 (72.06%), Query Frame = 0
Match: A0A6I9U5W2 ((E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO:0000313|RefSeq:XP_011094594.1}))
HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 290/519 (55.88%), Postives = 374/519 (72.06%), Query Frame = 0
Query: 7 EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKH-AECVKREDEGKKREAEL------YLQRARYLEGMLEHSERTAGSVTASSDFPRSS------CTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVD--IRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 510
+IDGL C IC E W+S G H VCCLPCGHIYGL+CI+KW+R RQ S KCPQCK+ C +KD+RLLYASRIV +D ELQKKVQ LEAKC+SL+ K AE K+E E KKREA L QR L +LE +ERTA ++AS R QF GCSN F +QK+F ++GAR+FD+D+SGQ+ +IARRL+GMGG LTK+SL++ +D+ D+ LP NTKAV+DL+ SP RL+L+ASLGKKLS++S++SN VLTY+LPAAAWSCSWDIS S+YAYAGLQNG +L FDMR T V+ +G+TCNPIH+LYS+ P+S SGVR++L+ASS+G C+WNFGG ++RP+LIP SD GVC+SLA S+ +IVASYRPK+ + S P+ A G GSHV Y++ ++KLG+TCANV+DIRLPKS I+D RN P+F S DE E+ LQ LPSL+ V+HL P+K+P+RDVK+ +S +L CL +D L+L++ K
Sbjct: 131 DIDGLFCSICFEAWSSGGDHHVCCLPCGHIYGLACIKKWLR-RQGSSKCPQCKKKCGIKDIRLLYASRIVAIDGELQKKVQSLEAKCSSLEKKQKAEWSKKEVEWKKREASLRRQVQDLEQRNHDLADLLEDTERTASGLSASGCNSRGESILGFDANAQFNMRGCSNKFIMQKDFQVDGARLFDIDSSGQIFVIARRLSGMGGAHVLTKVSLLSNNDKEDIWLPENTKAVKDLQISPHARLVLLASLGKKLSVLSTESNNAVLTYELPAAAWSCSWDISSSHYAYAGLQNGTVLQFDMRYTMRHVQSFSGLTCNPIHTLYSLLPKSSLSSGVRSVLSASSLGLCQWNFGGSEDRPYLIPESDEHGVCISLAFCKSSDDIVASYRPKIEI----SGDLDFCQPTLTAPGQRTRGSHVLYRKMGC-TYKKLGATCANVSDIRLPKSTIIDGVYRN---PVFASSDELTSELVLQELPSLMVVEHLKPKKYPIRDVKYHRQLSSGLLSCLTEDSLQLFTAK 640
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GFH5 ((E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|RefSeq:XP_018842654.2}))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 290/529 (54.82%), Postives = 374/529 (70.70%), Query Frame = 0
Match: A0A2I4GFH5 ((E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|RefSeq:XP_018842654.2}))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 290/529 (54.82%), Postives = 374/529 (70.70%), Query Frame = 0
Query: 2 SKDN----NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQRAR------YLEGMLEHSE-RTAGSVTASSDFPRSSCTGQ-FRKTGC----SNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRD-RLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPK-SAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS 512
S+DN +EIDGL CPICME WT +G H +CCLPCGHIYG+SCI KW++QR++S KCPQC R C+LKDV L+ASR+V VDEE QK+++ LEA+CASL+ K A+ K+E E KKREAEL+++ + YLE +L+ + R +G V A+ + S GQ F C S+SF LQKEF ++GAR+ DVDAS Q+LLI RR + MG LTK+SL+ PH++ D+ LPSN K ++DL SP + L+L ASLG+KLS++S +SN +L YDLPAAAWSCSWD+ SNY YAGLQNG LLVFD+RQT PV L G+TCNP+H+++S+ S GVR++L+ASSIG C WNFGG +E PFL+P +DN+GVC+SLA S S+ +IVASYRPKV M N + +Q TPS +G V GSH+ Y R S CFQKLGS ANVNDIRLPK SAI+D+ + + LF SGDE E+ LQ LPS QHL QK + DVK+TH +L CL +D L+++ +KLS
Sbjct: 100 SQDNEWSRSEIDGLFCPICMEAWTVDGGHHICCLPCGHIYGMSCINKWLKQRKNSGKCPQCNRKCTLKDVTKLFASRVVAVDEESQKRIRSLEARCASLEKKGADWCKKEAEWKKREAELHVKVCQLSEGKIYLEKLLKDMQSRPSGVVKAAGNCQGRSVFGQNFGSALCGQESSSSFILQKEFWLDGARLIDVDASSQILLIVRRRSEMGATSVLTKMSLMPPHEKEDIFLPSNMKVIKDLCISPSNGSLVLFASLGQKLSVLSLESNNIILAYDLPAAAWSCSWDLQNSNYIYAGLQNGSLLVFDVRQTVRPVNSLKGLTCNPVHTIHSLLHSSTLLPGVRSVLSASSIGLCHWNFGGAEEGPFLVPQTDNQGVCISLAYSPSSDDIVASYRPKVEMSNM-AFTQPALTPS-QVIGQGVQGSHIFYNRVGSNCFQKLGSASANVNDIRLPKRSAIIDVESQNR-LFASGDEVTCELILQELPSFAAFQHLKIQKQHICDVKYTHALGQGLLSCLEEDRLQIFCMKLS 625
BLAST of DCAR_009308 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834D4S6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5475790.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 290/529 (54.82%), Postives = 374/529 (70.70%), Query Frame = 0
Match: A0A834D4S6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5475790.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 290/529 (54.82%), Postives = 374/529 (70.70%), Query Frame = 0
Query: 2 SKDN----NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQRAR------YLEGMLEHSE-RTAGSVTASSDFPRSSCTGQ-FRKTGC----SNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRD-RLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPK-SAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS 512
S+DN +EIDGL CPICME WT +G H +CCLPCGHIYG+SCI KW++QR++S KCPQC R C+LKDV L+ASR+V VDEE QK+++ LEA+CASL+ K A+ K+E E KKREAEL+++ + YLE +L+ + R +G V A+ + S GQ F C S+SF LQKEF ++GAR+ DVDAS Q+LLI RR + MG LTK+SL+ PH++ D+ LPSN K ++DL SP + L+L ASLG+KLS++S +SN +L YDLPAAAWSCSWD+ SNY YAGLQNG LLVFD+RQT PV L G+TCNP+H+++S+ S GVR++L+ASSIG C WNFGG +E PFL+P +DN+GVC+SLA S S+ +IVASYRPKV M N + +Q TPS +G V GSH+ Y R S CFQKLGS ANVNDIRLPK SAI+D+ + + LF SGDE E+ LQ LPS QHL QK + DVK+TH +L CL +D L+++ +KLS
Sbjct: 127 SQDNEWSRSEIDGLFCPICMEAWTVDGGHHICCLPCGHIYGMSCINKWLKQRKNSGKCPQCNRKCTLKDVTKLFASRVVAVDEESQKRIRSLEARCASLEKKGADWCKKEAEWKKREAELHVKVCQLSEGKIYLEKLLKDMQSRPSGVVKAAGNCQGRSVFGQNFGSALCGQESSSSFILQKEFWLDGARLIDVDASSQILLIVRRRSEMGATSVLTKMSLMPPHEKEDIFLPSNMKVIKDLCISPSNGSLVLFASLGQKLSVLSLESNNIILAYDLPAAAWSCSWDLQNSNYIYAGLQNGSLLVFDVRQTVRPVNSLKGLTCNPVHTIHSLLHSSTLLPGVRSVLSASSIGLCHWNFGGAEEGPFLVPQTDNQGVCISLAYSPSSDDIVASYRPKVEMSNM-AFTQPALTPS-QVIGQGVQGSHIFYNRVGSNCFQKLGSASANVNDIRLPKRSAIIDVESQNR-LFASGDEVTCELILQELPSFAAFQHLKIQKQHICDVKYTHALGQGLLSCLEEDRLQIFCMKLS 652
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B2T7 | E-Value: 0.000e+0, PID: 57.69 | (Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0... [more] |
| A0A5J4ZNB6 | E-Value: 0.000e+0, PID: 56.35 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2R6RS83 | E-Value: 0.000e+0, PID: 55.17 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32... [more] |
| A0A7J7HPI1 | E-Value: 0.000e+0, PID: 56.16 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| D7TIS4 | E-Value: 0.000e+0, PID: 56.76 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6I9UA71 | E-Value: 0.000e+0, PID: 55.98 | (E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO... [more] |
| A0A834H443 | E-Value: 0.000e+0, PID: 53.75 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7147... [more] |
| A0A6I9U5W2 | E-Value: 0.000e+0, PID: 55.88 | (E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO... [more] |
| A0A2I4GFH5 | E-Value: 0.000e+0, PID: 54.82 | (E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|Re... [more] |
| A0A834D4S6 | E-Value: 0.000e+0, PID: 54.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5475... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |