DCAR_012336 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_012336

Identifier:

DCAR_012336.mRNA-protein

Sequence:

MDESGARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDD
KAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDS
GSSTLHNNSGLKVDNEKGGGSNQNHHNGGLASSRNSGSLGDAKEGKLKKV
KLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAP
RPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQ
MSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDEIRYLEKLRTS
KVAAGYKDAGEESGIKQRSLSRDLRGGNVKDFGPSKLGKDGKKAKSERGS
QDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSG
KDASSVSIEFPNGLPPPPPRSMLYEMAEAIRKILGQDSSRKKREDKIKKR
QEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSY
PPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDGGNSSGS*

Sequence Length:

549

Sequence Checksum:

a8dfca469648b850c82c51b4ccb231c5

View location in JBrowse:

DCARv2_Chr3:46000315..46004339+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_012336, derives from mRNA, DCAR_012336.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A6X3 ((Putative triadin {ECO:0000313|EMBL:MPA51406.1}))

HSP 1 Score: 482.256 bits (1240), Expect = 1.191e-162
Identity = 334/616 (54.22%), Postives = 403/616 (65.42%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 542
            M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP  E R++S L +    DD +++SSDE +G   +S+RK  FNLN C+SRD S ++ EGE+ HKK+K+D GS +L+ N GL    E+G  S  NH                                   NG   SSR+S  +GD    E K+KKVKLKVG VTRTIQTK                S+S  G+GSSTKSA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS    + S  + + G+M  +N S KQ E+S+ VRKS+RMPK+R L+    +D++DDEIRYLEKLRTSK+  G KD  E+S  KQRS+SR  + G    N++DFG S+  KDGKK++SER ++DTDYEEE     E E + KKK  KD  D P E ++E  LTTRQRALLSGKDASS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN   L  NTIR VMGPTGT V+F +DMGLP IFD++ CSYPPPREKCAGP+C+NPYKYRDS +K PLCSLQCYKAIHEKM+ 
Sbjct:    1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTK----------------SNSHGGSGSSTKSALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDASSTSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELILASNTIRWVMGPTGTVVSFPKDMGLPRIFDSKPCSYPPPREKCAGPTCSNPYKYRDSKSKLPLCSLQCYKAIHEKMEA 598

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BMR7 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})

HSP 1 Score: 479.559 bits (1233), Expect = 1.975e-161
Identity = 298/598 (49.83%), Postives = 380/598 (63.55%), Query Frame = 0

Query:    7 RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSS-TLHNNSGLKVDNEKG-GGSNQNHHNGGLASSRNS-------GSL-------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKL---AKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 542
            RFEGI +T RKKRSQ SRRP+PES P  E  + S   +    DD +K+SSDE +G   +S RK  FNLN CA RD S ++ EGE+ +KK+K++ G S  L++N+GL   +E+G  G N    + G+ +  N        GSL             G+++      V +   G    ++           +  TK  S+ ASG+ SSTKSA++S APRP+  L+LQ++S++D S P +K  GLQG P KDFS G  +  KE+ + G+M  +  S KQ E  + V KS+RMPK+R L+    +D++DDEIRYLEKL+ SK+AA  KD  EE   +QRS+SR  + G    N++DFG S+LGKDGKK++S R S DTDYE+E  + S+ EPE KKK     KD  DSP E  +E  LTTRQRALLSGKDASS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDK+KKR+EELA+E+AAN   L  +TIR VMGPTGT VTF +DMGLP IFD++ CSYPPPREKCAGP+C+NP+KYRDS +K PLCSLQCYKAIHE+M+ 
Sbjct:    8 RFEGIGNTIRKKRSQISRRPRPESLPFHENHDWSPSSSTTPSDDVSKVSSDENTGADTNSMRKD-FNLNQCALRDFSTSRAEGEYPNKKIKEEEGGSKLLYSNAGLGDSSEQGRNGLNHKLCSEGVLAPANWKITNKAKGSLELQSRTMDHGGRNGESQGSGYSGVMVDEVGNENKVKKVKLKVGGVTRTIQTKSNSNGASGSVSSTKSARSSDAPRPQQNLVLQENSNDDYSLPPNKNRGLQGIPWKDFSIGSFSFGKEDSSMGKMPEKTTSGKQGENLEPVCKSKRMPKRRVLDTAFGEDDEDDEIRYLEKLKNSKLAAVCKDVDEEPSKRQRSISRVSKSGKDDENLEDFGSSRLGKDGKKSRSGRVSVDTDYEDE--LASDCEPEDKKKKKKPWKDFVDSPRESWRETTLTTRQRALLSGKDASSTSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKTEAAQRRRMQVEKAAQESEAEAIRKILGQDSSRKKREDKLKKRREELAQEKAANELMLASSTIRWVMGPTGTVVTFPKDMGLPTIFDSKPCSYPPPREKCAGPTCSNPFKYRDSKSKLPLCSLQCYKAIHERMEA 602

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A473 ((Putative triadin {ECO:0000313|EMBL:MPA51407.1}))

HSP 1 Score: 473.011 bits (1216), Expect = 5.332e-159
Identity = 327/616 (53.08%), Postives = 394/616 (63.96%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 542
            M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP  E R++S L +    DD +++SSDE +G   +S+RK  FNLN C+SRD S ++ EGE+ HKK+K+D GS +L+ N GL    E+G  S  NH                                   NG   SSR+S  +GD    E K+KKVKLKVG VTRTIQTK  SH    +  +TK              SA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS    + S  + + G+M  +N S KQ E+S+ VRKS+RMPK+R L+    +D++DDEIRYLEKLRTSK+  G KD  E+S  KQRS+SR  + G    N++DFG S+  KDGKK++SER ++DTDYEEE     E E + KKK  KD  D P E ++E  LTTRQRALLSGKD SS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN   L  +TIR VMGP GT V+F +DMGLP IFD + CSYPPPRE+CAGPSC NPYKYRDS TK PLCSLQCYKAIH KM+ 
Sbjct:    1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTKSNSHGASGSGSSTK--------------SALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDVSSTSGASFIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELMLASSTIRWVMGPAGTVVSFPKDMGLPKIFDPKPCSYPPPREECAGPSCTNPYKYRDSKTKLPLCSLQCYKAIHGKMEA 600

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5K9 ((Putative triadin {ECO:0000313|EMBL:MPA51405.1}))

HSP 1 Score: 468.774 bits (1205), Expect = 3.042e-157
Identity = 327/617 (53.00%), Postives = 394/617 (63.86%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKK-DSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 542
            M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP  E R++S L +    DD +++SSDE +G   +S+RK  FNLN C+SRD S ++ EGE+ HKK+K+ D GS +L+ N GL    E+G  S  NH                                   NG   SSR+S  +GD    E K+KKVKLKVG VTRTIQTK  SH    +  +TK              SA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS    + S  + + G+M  +N S KQ E+S+ VRKS+RMPK+R L+    +D++DDEIRYLEKLRTSK+  G KD  E+S  KQRS+SR  + G    N++DFG S+  KDGKK++SER ++DTDYEEE     E E + KKK  KD  D P E ++E  LTTRQRALLSGKD SS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN   L  +TIR VMGP GT V+F +DMGLP IFD + CSYPPPRE+CAGPSC NPYKYRDS TK PLCSLQCYKAIH KM+ 
Sbjct:    1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTKSNSHGASGSGSSTK--------------SALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDVSSTSGASFIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELMLASSTIRWVMGPAGTVVSFPKDMGLPKIFDPKPCSYPPPREECAGPSCTNPYKYRDSKTKLPLCSLQCYKAIHGKMEA 601

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C1D1 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})

HSP 1 Score: 457.988 bits (1177), Expect = 3.414e-153
Identity = 320/617 (51.86%), Postives = 394/617 (63.86%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH-------------------------------HNGGLASSRNSGSL-----GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGGN----VKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS-----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 542
            M+E G+ RFEGI +T RKKRSQTSRRP+PESQP  E  ++S L +    DD ++ SSDE +G   +S+RK  FNLN C+SRD + ++ EGE+ HKK+K+  GS  L++  GL    E  G S  NH                               H G  + S++S  L     G   E K+KKVKLKVG VTRTIQTK  SH    +               SSTKSA++S APRPR K+ILQ++SD+D+SPP DKKSGLQG P KDFS   ++  K+  + G+M  +  + KQ E+S+ VRKS+R+PK+R L+GE D++D+D+ IRYLEKL+TSK+  G K   ++S  KQRS+SR  + GN    ++DFG S+  KDGKK++SER S+DTDYEEE     E E + KKK  KD+ D P E ++E  LTTRQRALLSGKDASS S     IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDKIKKR EELA+E+AANA  L  NTIR VMGP GT V+F EDMGLP IFD++ CSYPPPREKCAGPSC+N YKYRDS T  PLCSLQCYKAIH KM+ 
Sbjct:    1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRPESQPFPETCDRSPLSSTPPSDDGSRASSDENNGCDANSRRKD-FNLNQCSSRDYTASRAEGEYPHKKIKEVRGSK-LYSIGGLGNSTE-DGHSGLNHKRCSEGVLAPANWKSSSKVKGRLELQLRTGDHGGRNSESQSSRHLEVIRDGVENENKVKKVKLKVGSVTRTIQTKSNSHGASGSG--------------SSTKSAQSSDAPRPRQKMILQENSDDDHSPP-DKKSGLQGIPWKDFSRNSSSLGKD-FSMGKMPEKKATGKQGEKSEPVRKSKRVPKRRVLDGEFDEDDEDDEIRYLEKLKTSKLTVGCKYVEQDSSKKQRSISRVFKSGNYDENLEDFGSSRSIKDGKKSRSERESEDTDYEEELVSDCEPEDKKKKKPRKDLVDLPKENKRETTLTTRQRALLSGKDASSTSGGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKSEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRLEELAQEKAANA--LTSNTIRWVMGPAGTVVSFPEDMGLPSIFDSKPCSYPPPREKCAGPSCSNTYKYRDSKTNLPLCSLQCYKAIHGKMEA 596

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H860 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ19297.1}))

HSP 1 Score: 453.751 bits (1166), Expect = 1.673e-151
Identity = 312/621 (50.24%), Postives = 387/621 (62.32%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHHNGGLA------SSRNSGSL----------------------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQRSLSR---DLRGGNV-KDFGPSKLGKDGKK-AKSERGSQDTDYEEEEEVMSEGEPEAKKKLAK--DVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDGGNSS 546
            M+E G  RFE I +  RKKRSQ SRRP+PES   +E   +S L +    DD +K SSDE +G G ++ R+K+FNLN CA RD+  T   GE+ HKK+KKD GSS  + +    VD    G +N+    G  A      +++  GS                             G   +  LKKVKLKVGGVTRTIQ K  SH    +               SSTK ++TS APR + K+ILQD+SD+D  PPL KKS +QG P KDFS G +     ++ +G+M  +N S  + E+S+ VRKS+R+ K+R L+GE D+ED+D+ IRYLEKL+ SKVAAG KD  +ES  KQ+ ++R    ++ G V +DF  S+  KDGKK ++SER S+DTDYEEEEE+MS+GEP  KKK     D TD P E ++E+ LTTRQRAL SGKDASSVS    +EFPNGLPP P R     L E+                         AEAIRKILGQDSSRKKREDKIKKRQEE+A+E+AANA  L  NTIR VMGPTGT VTFS+DMGLP IF+ +  SYPPPREKCAGPSC NPYKYRDS +K PLCSL CYKAI+EKM    +S
Sbjct:    1 MEEFGGPRFESIGNAIRKKRSQISRRPRPESLKFSESLARSPLSSTPPSDDVSKNSSDEITG-GDANSRRKLFNLNQCALRDN--TSRAGEYPHKKIKKD-GSSYGYGDLEDSVDKGGSGLNNRQCSEGVFAPANWKSTNKTKGSFELQSTTADIHGGRNGESESSWHSRVNGHGVGNDTNLKKVKLKVGGVTRTIQAKSNSHGASGSG--------------SSTKDSRTSDAPRSQLKIILQDNSDDDAPPPLVKKSFIQGIPWKDFSGGSS-----DLGTGKMPEKNASANRGEKSEPVRKSKRVTKRRVLDGEFDEEDEDDEIRYLEKLKISKVAAGSKDFEQESSKKQQRIARVSKSVKHGEVSEDFVSSRSSKDGKKKSQSERRSEDTDYEEEEELMSDGEPGGKKKKKPRNDSTDLPIENKRELGLTTRQRALFSGKDASSVSGTSLVEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEEIAQEKAANALVLQSNTIRLVMGPTGTVVTFSKDMGLPSIFNPKPHSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAINEKMQAETTS 598

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G167 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ04524.1}))

HSP 1 Score: 446.432 bits (1147), Expect = 1.232e-148
Identity = 317/608 (52.14%), Postives = 386/608 (63.49%), Query Frame = 0

Query:    5 GARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHH------------------------------NGGLASSRNS--GSLGDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQR--SLSRDLRGGNV-KDFGPSKLGKDGKK-AKSERGSQDTDYEEEEEVMSEGEPEAKKKLAK--DVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMD 541
            G RFE I +T RKKRSQTSRRP+PES   +E  ++S + +    DD  K SSDE +G G +S R+K+FNLN CA RD+  T   GE+ HKK+KKD GSS  + +    VD  KGG    N                                NG   SS +S     G   +  LKKVKLKVGGVTRTIQTK  SHA              ASG+GSSTK ++TS APR + K+ILQD+SD+D+ PPL KKS ++G P KDFS     HS  ++ +G+M  +N S  + E+S  VRKS+R+PKKR L+ E DDED+D+ IRYLEKL+ SKVAAG KD  EES  KQR   +S+  +   + +DF  S+  KDGKK ++SERGS+DTDY+ +EE+MS+ EP  KKK     D  DSP E ++ + LTTRQRALLS KDASSVS    +EFPNGLPP P R     L E+                         AEAI+KILGQDSSRKKREDKIKKRQEE+A+E+AANA  L  NTIR VMGPTGT VTFS+DMGLP IF+ +  SYPPPREKCAGPSC NPYKYRDS +K PLCSL CYKAI+EKM+
Sbjct:    6 GPRFESIGNTIRKKRSQTSRRPRPESLQFSESLDRSPMSSTPRSDDVCKNSSDEITG-GDTSSRRKLFNLNQCALRDT--TSRAGEYPHKKIKKD-GSSYGYGDLEDSVD--KGGRELNNKQCSEGVFGPANWKSTNKTKRSFEMQSTTADINGESQSSWHSRVNGHGAGNDTNLKKVKLKVGGVTRTIQTKSNSHA--------------ASGSGSSTKDSRTSDAPRSQHKMILQDNSDDDDPPPLVKKSFMRGIPWKDFSG----HS-SDLGTGKMPEKNSSANRGEKSVPVRKSKRVPKKRVLDREFDDEDEDDEIRYLEKLKISKVAAGSKDFEEESSKKQRITRVSKSAKHDEISEDFVNSRSSKDGKKKSQSERGSEDTDYDNDEELMSDCEPGGKKKKKPRNDSIDSPTEKKRALGLTTRQRALLSSKDASSVSGTSVVEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIKKILGQDSSRKKREDKIKKRQEEMAQEKAANALVLASNTIRLVMGPTGTVVTFSKDMGLPSIFNPKPHSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAINEKME 588

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200PWC7 ((INO80 complex subunit B-like conserved region {ECO:0000313|EMBL:OVA02523.1}))

HSP 1 Score: 442.58 bits (1137), Expect = 3.313e-147
Identity = 292/617 (47.33%), Postives = 366/617 (59.32%), Query Frame = 0

Query:    8 FEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGS----STLHNNSGLKVDNEKG-GGSNQNHHNGGLASSRNSGSL----------------------------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDD-EIRYLEKLRTSK----VAAGYKDAGEESGIKQRSLSR--DLRGGNVKDF------GPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAK-KKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEK 539
            F+ + +  RKKRS  SRRP+P+S             +    D+ +K+SSDE +GY  SS+RK+ FNLN  ASR SSV K EGE ++KK++KD GS       +NN G +  +E+G  G++    + G+ +  N  S+                                  G   E KL+KVKLKVGGVTRTI      HA        K ++  A   GSS K++++S  PRPRPKLILQD+SD+D SPP +K SGLQG P KDFS       KE+ +  +M          E SD VRKS+R+PK+R L+G  +D D+D EIRYLE+LRTSK        Y+D  EE   KQR LSR   +R  N +DF      G S+ GK  KK++SER S+DT+Y  +EE+ S+ EPEAK KK  KD  DS  EG+KE+ LTTRQRAL SG+D SS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDKIKKR++ELA+E+AANA TL  NT+R +  P GTTV F  ++GLP +FD++  SYPPPREKCAGPSC NPYKYRDS TK PLCSL CYKA+ E+
Sbjct:    9 FDNVGNAVRKKRSTASRRPRPDS-------------STPPSDNVSKVSSDENTGYDTSSRRKE-FNLNQFASRVSSVNKSEGETSYKKIRKDGGSFGELHGFYNNGGSRGSSEQGRSGTDFKRCSEGVLAPANWKSMSTVKENFQSQSRKPESIMGSGKNVETSGHGVVLDGTGNENKLRKVKLKVGGVTRTI------HA--------KSSADDAPSGGSSMKTSRSSDVPRPRPKLILQDNSDDDLSPPPEKVSGLQGVPWKDFSRDGFGLGKEDSSKNKM---------PEESDPVRKSKRVPKRRVLDGAFNDGDEDAEIRYLERLRTSKGSMDCGVEYEDDEEEGSKKQRRLSRVSKIRMVN-EDFKDDLECGSSRSGK--KKSRSERASEDTEY-VDEELASDDEPEAKRKKPKKDSVDSMMEGKKEMTLTTRQRALQSGRDISSASGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRRDELAQEKAANAMTLASNTVRWISSPAGTTVIFPTEVGLPSLFDSKPISYPPPREKCAGPSCTNPYKYRDSKTKLPLCSLPCYKAVQEQ 584

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EJW5 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})

HSP 1 Score: 441.425 bits (1134), Expect = 1.222e-146
Identity = 310/617 (50.24%), Postives = 389/617 (63.05%), Query Frame = 0

Query:    1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHH---NGGLA-----------------------SSRNSGSL-----GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGE-SDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSR----DLRGGNVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKK--LAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPR---SMLYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDGGNSS 546
            M+E G  RFEG+ +T RKKRSQ SRRP+ ES P  E R++S L +    DD +K SS+E + +  +S+RK+ FNLNLC    S++    GE+  KK+K+D   S  + +     D++  GG+  NH     G LA                        ++NSG+      G   +  +K VKLKVGGVTRTIQTK  SH                SG+G STK A+TS APR RPKLILQD SD+D+    D+ SGLQG P KD++ G+++  KE+ + G++  +N S    E+ + VRKS+R+PK+R L+    ++++DDEIRYLEKL+ SKVAAG KD  EES  K + +SR       G  +++F  S+  KD KK++SERGS DTDYEE+EE+ S+GEPE KKK  L KD  DS  E RKE+ALT RQRALLS KDASS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDK+KKR+EEL +ERAA+ARTL  NTIR V+GP+ T VTFS DMGLP IF+ + CSYPPPRE+CAGPSC NPYKYRDS +K PLCSLQCYKA+HEKMD   SS
Sbjct:    1 MEEPGGPRFEGLGNTMRKKRSQNSRRPRLESLPFPETRDQSPLSSTPPSDDVSKTSSEENTRFDTNSRRKE-FNLNLCTLNGSAI--KAGEYPLKKIKEDRSHSLSYGDRDFG-DSDDQGGNGLNHQRCSEGALAPANWKTTTKMKGSFELQSTTRNGENQNSGNSRMNGDGVKNDNMVKMVKLKVGGVTRTIQTKSKSHGV--------------SGSGLSTKCARTSDAPRSRPKLILQDISDDDSP--PDQNSGLQGIPWKDYTRGNSSRGKEDSSMGKIPEKNASGNLGEKLEPVRKSKRVPKRRVLDAAFDEEDEDDEIRYLEKLKYSKVAAGNKDFEEESSKKHQRISRVPKNSKHGEILENFVSSRSSKDSKKSRSERGSDDTDYEEDEEIGSDGEPEGKKKKKLRKDSIDSAIEIRKELALTNRQRALLSSKDASSASGASIIEFPNGLPPAPPRKQKEQLSELEQQLKKAEAAQRRRLQVEKAARESEAEAIRKILGQDSSRKKREDKLKKRREELEQERAASARTLASNTIRWVIGPSSTVVTFSNDMGLPSIFNPKPCSYPPPRERCAGPSCTNPYKYRDSKSKLPLCSLQCYKAMHEKMDAETSS 597

[Close]

BLAST of DCAR_012336 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C284 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})

HSP 1 Score: 441.425 bits (1134), Expect = 2.186e-146
Identity = 295/623 (47.35%), Postives = 379/623 (60.83%), Query Frame = 0

Query:    5 GARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKD----SGSSTLHNNS------------------------------GLKV-----DNEKGGGSNQNHHNG--GLASSRNSGSLGDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDL--NGESDDEDDDEIRYLEKLRTSKVAAGYKDAGE---ESGIKQ-RSLSRDLR-----GGNVK--DFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEA-KKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRSM---LYEM-------------------------AEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKM 540
            G  F  +  T RKKRS +SRRP+ +SQPL + R+ S+L +    D+ +K SSD+ +G+G +S++K++ NLN C+SR SS    E E A K   +D    S  + + +NS                              GL++     D +  G  +  H +G  GLAS       G   + K KKVKLKVGGVTRTI             H T  +  ++ G  SSTKS+ +S APRPR +LILQD SDED SP  DK SGL G P KDFS    +  K + + G+M+  + S KQ+++ + VRKS+R+PK+R L    +  D+DD+EIRYLEKL+T+KVAA Y    E   E G K+ R +SR L+     G NV   D+G S+  ++ KK++S R  +DTDY EEEE++S+GEPE  +KK  K+  D   + ++E+A+TTRQRAL +GKD SS S    IEFPNGLPP PPR     L E+                         AEAIRKILGQDSSRKKREDK+KKRQEELA+ERAANA TL  NT+R VMGP+GT VTF  ++GLP IFDT+ CSYPPPREKCAGPSC NPYKYRDS +K PLCSLQCYKA+HEKM
Sbjct:    6 GFGFGDVNKTVRKKRSNSSRRPRNDSQPLPDYRDNSSLSSTPPSDNASKASSDDNTGHGTNSQKKEL-NLNQCSSRASSTNLAEAETALKVNNEDGLGESSDALVKSNSERKHSGIDSKRSSEGALAPVNWKSTNKVKEGLELQSRTRDTKSSGRISGTHSSGQSGLASD------GQGNDNKFKKVKLKVGGVTRTI-------------HPTSTSDGASLGGSSSTKSSHSSDAPRPRQRLILQDMSDEDRSPSPDKGSGLHGVPWKDFSRSGFSVRKVDSSRGKMAEESVSIKQSDKHEPVRKSKRVPKRRLLDGAFDDGDDDDEEIRYLEKLKTTKVAADYGAENEYEDEVGTKKHRKISRVLKKNIDGGYNVDAGDYGSSRSAREAKKSRSGRSYEDTDYMEEEEMVSDGEPETNRKKQRKEFIDVLGDSKREMAVTTRQRALQTGKDISSSSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKMKKRQEELAQERAANAMTLTSNTVRWVMGPSGTVVTFPNELGLPSIFDTKPCSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKALHEKM 608


Match Name	Stats	Description
A0A5B7A6X3	E-Value: 1.191e-162, PID: 54.22	(Putative triadin {ECO:0000313\|EMBL:MPA51406.1})[more]
A0A5J5BMR7	E-Value: 1.975e-161, PID: 49.83	PAPA-1 domain-containing protein {ECO:0000259\|SMAR... [more]
A0A5B7A473	E-Value: 5.332e-159, PID: 53.08	(Putative triadin {ECO:0000313\|EMBL:MPA51407.1})[more]
A0A5B7A5K9	E-Value: 3.042e-157, PID: 53.00	(Putative triadin {ECO:0000313\|EMBL:MPA51405.1})[more]
A0A5J5C1D1	E-Value: 3.414e-153, PID: 51.86	PAPA-1 domain-containing protein {ECO:0000259\|SMAR... [more]
A0A7J0H860	E-Value: 1.673e-151, PID: 50.24	(HIT zinc finger and PAPA-1-like domain-containing... [more]
A0A7J0G167	E-Value: 1.232e-148, PID: 52.14	(HIT zinc finger and PAPA-1-like domain-containing... [more]
A0A200PWC7	E-Value: 3.313e-147, PID: 47.33	(INO80 complex subunit B-like conserved region {EC... [more]
A0A4S4EJW5	E-Value: 1.222e-146, PID: 50.24	PAPA-1 domain-containing protein {ECO:0000259\|SMAR... [more]
A0A5B7C284	E-Value: 2.186e-146, PID: 47.35	PAPA-1 domain-containing protein {ECO:0000259\|SMAR... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.