Resource Type:
Polypeptide
Name:
DCAR_010874
Identifier:
DCAR_010874.mRNA-protein
Sequence:
MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVV
IEDGSEEEDGSRRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDESVE
TMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSR
RGPRSRSSQYRGVTFYRRTGRWESHICAYDRAAIKFRGVEADINFVLEDY
EEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQ
FLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPT
ETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSW
QNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSAR
PQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSSIGGQSSAS
DYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRPP*
Sequence Length:
499
Sequence Checksum:
5e2151b17082b8d23ff26e646c90b9a5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_010874, derives from mRNA, DCAR_010874. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 334/529 (63.14%), Postives = 384/529 (72.59%), Query Frame = 0
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 334/529 (63.14%), Postives = 384/529 (72.59%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +L QQE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRPKFNL-QQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 510
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 334/529 (63.14%), Postives = 384/529 (72.59%), Query Frame = 0
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 334/529 (63.14%), Postives = 384/529 (72.59%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +L QQE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRPKFNL-QQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 510
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 332/529 (62.76%), Postives = 382/529 (72.21%), Query Frame = 0
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 332/529 (62.76%), Postives = 382/529 (72.21%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +QE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRP-----KQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 506
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BFY6 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032})
HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 311/471 (66.03%), Postives = 354/471 (75.16%), Query Frame = 0
Match: A5BFY6 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032})
HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 311/471 (66.03%), Postives = 354/471 (75.16%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHICAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRS 458
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHICAYDRAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +QE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHICAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRP-----KQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQS 449
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 517.309 bits (1331), Expect = 1.744e-178
Identity = 322/533 (60.41%), Postives = 369/533 (69.23%), Query Frame = 0
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 517.309 bits (1331), Expect = 1.744e-178
Identity = 322/533 (60.41%), Postives = 369/533 (69.23%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGS----RRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSS---IGGQSSA--SDYHNQW-------RSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RD+E EGCSS E +KGKRVGSMSNSSSSAVVIEDGS+EEDGS R K+ S KIFGFSV DNS P++TRQFFPV++ + FPR+HWVGVKF Q+E + + KS EV QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHI C +D RAAIKFRGVEADINF +EDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +E+S N DHNLDLSLG++GSKQ +G + G DQQSA M + + W+NRGIRP L+L + + + RR+GY E ET+QLLSQTH+QSPG+ + + + E Q H F + NYQMQF SSS+ IG S SDYH+ R P Q+ A+AAASSGFP Q +R+ NWL NGFHS +RP
Sbjct: 1 MWDLNDSPDQTRDDES--EGCSSQKTSLDGEDEKGKRVGSMSNSSSSAVVIEDGSDEEDGSGERGRIKKRSGKIFGFSVTRDNSSMESDPLVTRQFFPVEDQEMGATSGGGGGVGAGFPRAHWVGVKFCQSE----SLASPKSAEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGNAADHNLDLSLGNSGSKQNSVGFSNDRQNAGMDQQSAPMAFEAD-WRNRGIRPKLNLSRSDDS----DDHRREGYCETETMQLLSQTHIQSPGN------EGQRYGQFKRPGENQM-FHGF----SPNYQMQFPSSSNGGRIGSDLSLSPSDYHHHHQQRQWQSRPPPPHQLVANAAASSGFPQQ--IRTPQNWLQKNGFHSILRP 509
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 514.612 bits (1324), Expect = 2.029e-177
Identity = 336/530 (63.40%), Postives = 389/530 (73.40%), Query Frame = 0
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 514.612 bits (1324), Expect = 2.029e-177
Identity = 336/530 (63.40%), Postives = 389/530 (73.40%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGSR--RKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDES-VETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQ---KELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQ-HNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MWNLNDSP R ++ESE GCSSP DG E+DKGKRVGS+SNSSSSAVVIE+GSE+EDG R RKR SSKIFGFSV ++ S E EPPV TRQFFP++ S + T + FPR+HWVGVKF Q+EP AG S+EV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LE+YEEDLK+MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE EL TE N NLDLSLGST + +ELG + + DQ+SASM + ++ W+N+G RP ++E+ RN+++++RRDG+NE ET+QLLSQTHLQSP S + +MH + + K E Q +HMFP Q +SN+Q+QF SSS + GG S S QW+S+ P Q+FA+AAASSGF PQQI R +WL NGFH MRP
Sbjct: 1 MWNLNDSPDQRRVDDESE-GCSSPVDG--VEYDKGKRVGSVSNSSSSAVVIEEGSEDEDGERGRRKRMSSKIFGFSVTDNCSSESEPPV-TRQFFPLEYSEMGTTPGGGGGCGATNFPRAHWVGVKFCQSEP--LAGGVANSSEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEEYEEDLKKMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGNAAGQNLDLSLGSTSVLKQNSRELGGEIQN--PAMDQRSASMPFEVD-WRNQGFRP-----KKETQRNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-LHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLSLSTSDQQWQSNPPHQLFATAAASSGF-PQQINRPQ-HWLQ-NGFHYLMRP 510
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 510.375 bits (1313), Expect = 1.375e-175
Identity = 340/538 (63.20%), Postives = 388/538 (72.12%), Query Frame = 0
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 510.375 bits (1313), Expect = 1.375e-175
Identity = 340/538 (63.20%), Postives = 388/538 (72.12%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFD--KGKRVGSMSNSSSSAVVIEDGSEEEDGS--RRKRSSSKIFGFSV--NNDN-SPELEPPVITRQFFPVDESVETMGIASE----ASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPT--ETSSNQRDHNLDLSLGSTGSKQ--KELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMF-PTQHNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RDEE EGCSSP D E+D KGKRVGS+SNSSSSA+VIE+GSEEEDG RRKRSS KIFGFSV NNDN S E E PV TRQFFPV++S ET G S +T PR+HWVGVKF Q+EP G GKS EV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LEDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE E+ + + SN D NLDLSLG++ KQ +E+G D + D SASM + ++ W+N+G RP L+L QQE RN++++ RR G++E ET+QLLSQTHLQSP S + +MH + + K E Q HMF P +S++ QF SSS + GG S S QW+S+ PQ+FA+AAASSGF PQQI R +W+ NGFH MRP
Sbjct: 1 MWDLNDSPDQRRDEES--EGCSSPVD----EYDDDKGKRVGSLSNSSSSALVIEEGSEEEDGERGRRKRSS-KIFGFSVTHNNDNCSSESELPV-TRQFFPVEDS-ET-GTKSGGGGGCVGATTLPRAHWVGVKFCQSEP--LGGGVGKSIEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENEIDSSTADCPSNVADQNLDLSLGNSAMKQNSREMGGDVQN--PAMDLHSASMPFEVD-WRNQGFRPKLNL-QQEPHRNEIDAHRRAGFHETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-FHMFQPQLSSSSFLTQFPSSSNGGRFGANGGDLSLSTGDQQWQSNPPQLFATAAASSGF-PQQINRPQ-HWMQKNGFHYVMRP 517
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.432e-173
Identity = 340/537 (63.31%), Postives = 387/537 (72.07%), Query Frame = 0
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.432e-173
Identity = 340/537 (63.31%), Postives = 387/537 (72.07%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEED---GSRRKRSSSKIFGFSV--NNDN-SPELEPPVITRQFFPVDESVETMGIASE----ASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTG---SKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQ-HNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 497
MW+LNDSP RD+E EGCSSP DG +GKRVGS+SNSSSSAVVIE+GS+EED GSRRKRSS IFGFSV N+DN S E EPPV TRQFFPV++S G S + PR+HWVGVKF Q+EP G GKSTEV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C +D RAAIKFRGVEADINF LEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE EL TE N NLDLSLGST +ELG + + DQ+SASM + ++ W+N+G RP ++E+ RN+++++RRDG+NE ET+QLLSQTHLQSP S + +MH + + K E Q +HMFP Q +SN+Q+QF SSS + GG S S QW+S+ P Q+FA+AAASSGF PQQI R +WL NGFH MRP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSPVDGV-----EGKRVGSVSNSSSSAVVIEEGSDEEDGERGSRRKRSS-MIFGFSVTHNDDNCSSESEPPV-TRQFFPVEDS--EAGTKSGGGGGCVGATNLPRAHWVGVKFCQSEPRGGGGGVGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGNAAGQNLDLSLGSTSVLKQNSRELGGEIQN--PAMDQRSASMPFEVD-WRNQGFRP-----KKETQRNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-LHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLSLSTSDQQWQSNPPHQLFATAAASSGF-PQQINRPQ-HWLQ-NGFHYLMRP 512
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 501.901 bits (1291), Expect = 7.256e-173
Identity = 314/532 (59.02%), Postives = 360/532 (67.67%), Query Frame = 0
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 501.901 bits (1291), Expect = 7.256e-173
Identity = 314/532 (59.02%), Postives = 360/532 (67.67%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGSRRKRSSSKIFGFSV---NNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--C-----------------AYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHL-QSPGSA-RPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSSIGG---QSSASDYHNQWRSS--GP---QVFASAAASSGFPPQQIVRSDP-NWLHTNGFHSYMRP 497
MW+LNDSP ++ESE CS D DKGKRVGS+SNSSSSAV ++EDG RKRS SKIFGFSV ++ S E +PPV T QFFP + + FPR+HWVGV+F Q+E P A AGK TE QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI C AYDRAAIKFRGVEADINF LEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ TE S DHNLDLSLGS+ SKQK ++ DD H SM + W+NR +P ++ QQ++ + S RRDGYNE +T+QLLSQTH+ Q+P S+ +P +M + + +HMFP +YQ+Q SSS+ G S ++ H W+ + P QVFASAAASSGFP Q+I+ + P NWL NGFH MRP
Sbjct: 1 MWDLNDSPDPTTRDDESEV-CSYGDD------DKGKRVGSVSNSSSSAV------DDEDGGGRKRSGSKIFGFSVTRPDDSFSSESDPPV-THQFFPASDG---------GGGAANFPRAHWVGVRFCQSEAPVAA--AGKFTETTQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFTLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPSDHNLDLSLGSSASKQKSHDIADDQRH---------TSMPIEVTDWRNREFQPKINFQQEQF----IRSDRRDGYNETDTMQLLSQTHINQTPTSSFKPNEMQ--------RYGKFAHELHMFP----PHYQVQCPSSSTNGNGGKLSLSTSEHQNWQLNIVNPPPGQVFASAAASSGFPQQKIITTAPQNWLQQNGFHFSMRP 482
BLAST of DCAR_010874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6K6D9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2283748.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 3.529e-171
Identity = 326/545 (59.82%), Postives = 375/545 (68.81%), Query Frame = 0
Match: A0A6A6K6D9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2283748.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 3.529e-171
Identity = 326/545 (59.82%), Postives = 375/545 (68.81%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSS---PFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEED----GSRRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDE--------SVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHI--CA-------YD----------RAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSS---IGGQSSAS----DYHN--QWRSSGP----QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRPP 498
MW+LNDSP R +E EGCSS DGD +KGKRVGS+SNSSSSAVVIEDGSEEED G R K+ SSKIFGFSV +DNS E +PPV TRQFFPV++ G + FPR+HWVGVKF Q+E + + KS EV QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHI C +D RAAIKFRGVEADINF +EDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +E+S + DHNLDLSLG++GSKQ +G + G DQQSA M + + W+NRGIRP L+L + RR+GY E ET+QLLSQTH+QSPG+ PQ + + + E Q MF +NYQ+QF SSS+ IG S S D+H QW+S P Q+ A+AAASSGFP Q +R+ +WL NG HS +R P
Sbjct: 1 MWDLNDSPDQIRGDES--EGCSSQKTSLDGDD---EKGKRVGSVSNSSSSAVVIEDGSEEEDVSGEGCRIKKRSSKIFGFSVTHDNSMESDPPV-TRQFFPVEDQEMGATSGGSGGGGGGGGGGGGAGFPRAHWVGVKFCQSE----SLASPKSVEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGSAADHNLDLSLGNSGSKQNNVGFSNDRQNAGIDQQSAQMPFEAD-WRNRGIRPKLNLYRNSDS----NEHRREGYCETETMQLLSQTHIQSPGN-EPQ-----RYGQFRRPGETQ----MFHDFSPTNYQIQFPSSSNGGRIGSDLSLSPSDYDHHQQRQWQSRPPPPPYQLVANAAASSGFPQQ--IRTPQSWLQKNGLHSILRTP 518
| Match Name | Stats | Description |
|---|---|---|
| A0A438FKK4 | E-Value: 0.000e+0, PID: 63.14 | (Floral homeotic protein APETALA 2 {ECO:0000313|EM... [more] |
| C1KBJ2 | E-Value: 0.000e+0, PID: 63.14 | (AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription... [more] |
| F6H4H7 | E-Value: 0.000e+0, PID: 62.76 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4704... [more] |
| A5BFY6 | E-Value: 0.000e+0, PID: 66.03 | AP2/ERF domain-containing protein {ECO:0000259|PRO... [more] |
| A0A2C9UVB7 | E-Value: 1.744e-178, PID: 60.41 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3549... [more] |
| A0A5B6ZKX6 | E-Value: 2.029e-177, PID: 63.40 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A5J5BZ25 | E-Value: 1.375e-175, PID: 63.20 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A5B6ZM57 | E-Value: 1.432e-173, PID: 63.31 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A2R6PAC1 | E-Value: 7.256e-173, PID: 59.02 | (Floral homeotic protein like {ECO:0000313|EMBL:PS... [more] |
| A0A6A6K6D9 | E-Value: 3.529e-171, PID: 59.82 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2283... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |