MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKK
PNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNN
HRPEAPPPMLPGRYVSKRERAAAAATTPPDPLTTTLITPSSSSAIGSISV
MDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSH
LLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCG
YDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLW
DIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWD
VSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKL
DRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKV
KLYEQACIDVAFHPVMPNVIASCSWNGEISVLE*
| Relationships |
|---|
| The polypeptide, DCAR_008699, derives from mRNA, DCAR_008699. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7BSK6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71852.1}) (Fragment))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 292/483 (60.46%), Postives = 359/483 (74.33%), Query Frame = 0
Query: 2 DELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAAT-TPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
D L NAYSTA+ D+E + + P PPSKR KPD N +S TK +P + N+ N EAP +PGRY+SKRERA A+ PDP+ + +T +S +GSIS D+ +DIL LR Q KG ++ G+ E LS++L H KAVN +QWS++H+HLLASAGMDHTIC+WN WS++++KARVL++H+AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE +FKEDQVVGV+KFHP+N NLFLSGGSKG ++LWDIRT K H+Y+RGLGPILDVEF N A QF+SSSDVSK NV+ENSI+VWD+SRQ+PLSNQVY EAYTCP I+ H + YFVAQSNGNYIAIFS+K PFKL++Y+RYESH VSGFP++C+FSLDGE+LASGSSDGCIYFYNSRS+ELIKK+K+YEQACIDVAFHP++PNVIASCSWNG++SV E
Sbjct: 1 DLLCNAYSTASDDDEPERER---------PVLPPSKRFKPD-------------------------NPLSFLTKPLP-------------VLRQNHSPNLSTEAP---IPGRYISKRERAVLASVPMVPDPIPPSPVT--TSPVLGSISDSDLPHDILSLLRHQAKGRAMLGQISERLSVALNSHMKAVNVVQWSASHAHLLASAGMDHTICIWNVWSRDQKKARVLNYHSAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLETQVFKEDQVVGVIKFHPDNPNLFLSGGSKGFVRLWDIRTGKVVHEYIRGLGPILDVEFNNDAKQFISSSDVSKSNVSENSIIVWDISRQIPLSNQVYVEAYTCPCIRRHPFDPYFVAQSNGNYIAIFSSKPPFKLEKYKRYESHSVSGFPIKCNFSLDGEKLASGSSDGCIYFYNSRSSELIKKIKVYEQACIDVAFHPLLPNVIASCSWNGDVSVFE 431
Match: A0A200QBW9 ((WD40 repeat {ECO:0000313|EMBL:OVA07959.1}))
HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 273/484 (56.40%), Postives = 349/484 (72.11%), Query Frame = 0
Query: 1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAATTPPDP-LTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
MD L NAYS A+ D+D+D K + PPP+KR +P+ N ++ + S+ C Y Y ++ + EAP + GRY+SKRERA + + D L +T+IT S +GSIS D+R+DIL SLR Q KG + +G+ PE L+++L H KAVNA+QWS TH+HLLASAGMDH +C+WN WS+ ++KA V ++HTAAVKD++WS+ GLSLLSCGYDCSSRL DVEKG+E +FKE+QVVGV+KFHP NSNLFLSGGSKG ++LWDIR + +YVRGLGPILDV+F A F+SSSD+SK N++ENSI+VWDVSRQVPLSNQ+Y EAYTCP I+ H + +FVAQSNGNYIAIFS++ PF+LD+Y+RYE HGVSGFP++C F+LDGE+LASGSSDGCIY Y+ RS EL++K+K YEQAC DVAFHP +PNVIASCSWNG++S+ E
Sbjct: 1 MDLLCNAYSAAS----DEDEDEKKIS----SQPPPTKRMRPE-----------------------NRSSFQQIMPSVQC-------------YPKFYSSDQQKEAP---IAGRYISKRERAMSGSLAVSDVNLPSTVIT---SPVVGSISDSDVRSDILSSLRSQAKGSAHHGRTPERLTMTLNSHTKAVNAIQWSPTHAHLLASAGMDHAVCIWNVWSRGQKKACVFNYHTAAVKDVRWSQQGLSLLSCGYDCSSRLVDVEKGIETQLFKENQVVGVIKFHPENSNLFLSGGSKGFIRLWDIRVGRTVQEYVRGLGPILDVDFSIDAKHFISSSDISKTNISENSIIVWDVSRQVPLSNQIYVEAYTCPCIRYHPFDPFFVAQSNGNYIAIFSSRPPFRLDKYKRYEKHGVSGFPIKCSFNLDGERLASGSSDGCIYLYDYRSAELVRKIKAYEQACTDVAFHPCIPNVIASCSWNGDVSIFE 434
Match: A0A5J4ZY79 (NAD(P)H dehydrogenase (quinone) {ECO:0000256|ARBA:ARBA00012648} (1.6.5.2 {ECO:0000256|ARBA:ARBA00012648}))
HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 257/374 (68.72%), Postives = 312/374 (83.42%), Query Frame = 0
Query: 110 LPGRYVSKRERAAAAATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
L G Y + E+ + PDP+ +T +S IGSIS D+ DIL SLR Q KG ++ G+ E LS+SL H KAVN +QWS++H+HLLASAGMDHTIC+WN WS++++KARVL++H+AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE +FKEDQVVGV+KFHP+N N+FLSGG KG L+LWDIRT K +Y+RGLGPILDVEF N A QF+SSSDVSK NV+ENSI+VWD+SRQ+PLSNQVY EAYTCP I+CH + YFVAQSNGNYIAIFS+K PFKL++++RYESH VSGFP++C+FSLDGE+LASGSSDGCIYFYNSRS+ELIKK+K YEQACIDVAFHP++PNVIASCSWNG++SV E
Sbjct: 201 LAGTYRRESEQYWLQSQGFPDPIPLPPVT--TSPVIGSISDSDLPRDILSSLRHQAKGRAMLGQISERLSVSLNSHMKAVNVVQWSASHAHLLASAGMDHTICIWNVWSRDQKKARVLNYHSAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLETQVFKEDQVVGVIKFHPDNPNIFLSGGLKGFLRLWDIRTGKVVQEYIRGLGPILDVEFTNDAKQFISSSDVSKSNVSENSIIVWDLSRQIPLSNQVYVEAYTCPCIRCHPFDPYFVAQSNGNYIAIFSSKPPFKLEKFKRYESHSVSGFPIKCNFSLDGEKLASGSSDGCIYFYNSRSSELIKKIKAYEQACIDVAFHPLLPNVIASCSWNGDVSVFE 572
Match: A0A2R6PTA2 ((WD repeat-containing protein {ECO:0000313|EMBL:PSR96324.1}))
HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 287/489 (58.69%), Postives = 344/489 (70.35%), Query Frame = 0
Query: 1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAAT------TPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
MD L NAYS A+ D+E++ + G+ + PPSKRPKPD+ +Y KP + C PV IY EAP +PGRY+SKRERA A+ PPDP TT GSI DI +DIL S+R Q KG G+ E LS++L+GH KAVN +QWS++H HLLASAGMDH IC+WN WS +++KA VL++H AAV D+KWS GL LLSCGYDCSSRL DVE GLE +FKEDQVV V+KFHPNNSNLFLSGGSKG L+LWDIR K ++Y RGLGPILDVEF QF+SSSDVSKGNV+ENSI++WD+SRQVPLSNQVY EAYTCP I+ H + YFVAQSNGNYIAIFS++ PFKLD+Y+RYESHGVSGFP++C+F+LDG++L SGSSDGCIYFYN+RSTELIKK+K YEQACIDVAFHP M NV+ASCSW+G++ V E
Sbjct: 1 MDLLCNAYSNASDDDEEEPEHGRPGPL------PPSKRPKPDHPV-SYPKPLPDMPLLCPQPV----------------------------IYPPT-------EAP---VPGRYISKRERAVLASGPRVPDPNPPDPATT---------PPGSILDSDIPHDILSSMRHQTKGRG-RGQISERLSVALSGHSKAVNVVQWSTSHGHLLASAGMDH-ICIWNVWSTDQKKAHVLNYHNAAVNDVKWSPQGLFLLSCGYDCSSRLIDVETGLETQVFKEDQVVRVIKFHPNNSNLFLSGGSKGFLRLWDIRVGKVVNEYFRGLGPILDVEFTIDTKQFISSSDVSKGNVSENSIIIWDISRQVPLSNQVYVEAYTCPCIRSHPRDSYFVAQSNGNYIAIFSSRPPFKLDKYKRYESHGVSGFPIKCNFNLDGDKLVSGSSDGCIYFYNTRSTELIKKIKAYEQACIDVAFHPTMSNVVASCSWSGDVWVFE 433
Match: A0A2U1KCL2 ((Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:PWA34510.1}))
HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 284/486 (58.44%), Postives = 345/486 (70.99%), Query Frame = 0
Query: 1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAA---TTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
MD L NAYSTA ED+D++ + A PPP KR KPD FP ++ +P +T N N E P + GRY+SKRERA A+ T+ DP T++ +P GSIS IR DI SLR + +G++ +G+ E +S +L H KAVNA++WS H HLLASAGMD +ICVWN WS ++KARV + HTAAVKDIKWSE G SLLSCGYDCS+RL DVEKGLE +FKEDQVVGVVKFHPNNSNLFLSGGSKG ++LWDIRT+ A +QY+RGLGPILD+EF N QF+SSSD SK N++ENSI+VWDVSRQVPLSNQ+Y EAYTCP I+ H +QYFVAQSNGNYIAIFS+K P++LD+Y+RYE HGVSGFPV+C+FS DG++LASGSSDG IYFYN+++ +LIKK+K+YEQ C+DVAFHPVM N+IASCSWNGEISV E
Sbjct: 1 MDLLYNAYSTA----EDEDEENEKHA------PPPLKRAKPD--FP------------------------HTSSRRLPAVTL-------------NQSQNITTEVP---IAGRYISKRERAIMASAPQTSNADPPTSSACSPVQ----GSISDSFIRKDIYSSLRNRTEGYTNSGRISERVSTTLMSHKKAVNAIEWSKNHPHLLASAGMDSSICVWNVWSSEQKKARVFNIHTAAVKDIKWSEQGYSLLSCGYDCSTRLIDVEKGLETCVFKEDQVVGVVKFHPNNSNLFLSGGSKGGIRLWDIRTRNAVNQYLRGLGPILDLEFTNDTRQFISSSDESKSNISENSIIVWDVSRQVPLSNQIYVEAYTCPCIRHHPYDQYFVAQSNGNYIAIFSSKPPYRLDKYKRYECHGVSGFPVKCNFSPDGKKLASGSSDGYIYFYNAKTCDLIKKIKVYEQTCVDVAFHPVMSNIIASCSWNGEISVFE 430
Match: A0A834ZL54 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409434.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 260/391 (66.50%), Postives = 317/391 (81.07%), Query Frame = 0
Query: 99 NNHRPEAPPPMLPGRYVSKRERAAAAATTP-PDPLTTTLITPSS-----SSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
N + EAP P + GRYVSKRERA +AA + PD ++ I PS SSA+GSIS D+ DIL SLR+Q KG + G+ PE LS++L GH KAVN++QWS TH+HLLASAGMDHT+C+WN WS +++KARV S+H AAVKD+KWS+ GLSLLSCGYD SSRL DVEKG+E +FKEDQVVGV+KFHP NSNLFLSGGSKG+L++WDIR K +Y+RGLG ILD+EF F+SSSDVS+GNV+E SI+VWD RQVPLSNQVY EAYTCP ++ H + +F+AQSNGNYIAIFS+ PFKLD+Y+RYE+HGVSGFP++C FSLDGE+LASGSSDGCIYFY RST+L++K++ +E+ACIDVAFHP MPNVIASCSWNG+ISV E
Sbjct: 78 NPQKREAPIP-IAGRYVSKRERAISAADSRVPDLALSSTIIPSPDAFFLSSAVGSISDSDLPCDILSSLRRQAKGKTQLGQIPERLSVALNGHTKAVNSIQWSPTHAHLLASAGMDHTVCIWNVWSTDQKKARVFSYHNAAVKDVKWSQQGLSLLSCGYDYSSRLTDVEKGVETQIFKEDQVVGVIKFHPGNSNLFLSGGSKGLLRVWDIRVGKVVQEYIRGLGSILDIEFSIDTKHFISSSDVSRGNVSEKSIIVWDYLRQVPLSNQVYVEAYTCPCVRYHPFDPFFIAQSNGNYIAIFSSSPPFKLDKYKRYENHGVSGFPIKCSFSLDGEKLASGSSDGCIYFYTCRSTKLLRKIQAFEEACIDVAFHPRMPNVIASCSWNGDISVFE 467
Match: A0A1U7YMD2 ((WD repeat-containing protein 25 isoform X1 {ECO:0000313|RefSeq:XP_010240995.1}))
HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 280/486 (57.61%), Postives = 341/486 (70.16%), Query Frame = 0
Query: 1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAA---TTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
MD L NAYS AA DEED DD+ K PP KR + + N + Q +S+P + P NY+ N R EA +PGRY+SKRERA +A + PDP + + +P IGSIS D+ IL SLR + KGH+ +G+ PE LS LT H K VN++QWS TH HLLASAGMDH +C+WN WSK+++KAR+ ++H AAVKD++W G SLLSCGYDCSSRL D+EKG+E +FKEDQVVGV+KFHP NSNLFLSGGSKG LKLWDIR KA Y R LGP+LDV+F A F+SSSD+S+ NV+ENSI+VWDVSRQVPLSNQVY EAYTCP ++ H + F+AQS+GNYIAIFS+ PFKLD+Y+RYESHGVSGFP++C+FSLDGE LASGSSDGCIYFY+ RS++LI+K+K YEQAC+DVAFHP +PNVIASC WNGEISV E
Sbjct: 1 MDLLFNAYS-AASDEED-DDEKKLVR-------PPLKRIRRE--------------------------NPTLQLQSLP--EYCPNNYS-----------NQRQEAS---IPGRYISKRERAISAVASRVSEPDPSSMVITSP----VIGSISESDVPFGILSSLRCKGKGHAQHGQTPERLSKVLTCHTKPVNSIQWSPTHDHLLASAGMDHMVCIWNVWSKSQQKARIFNYHNAAVKDVRWLPQGFSLLSCGYDCSSRLVDIEKGIETQIFKEDQVVGVIKFHPENSNLFLSGGSKGHLKLWDIRVGKAMCNYNRNLGPVLDVDFSYDAKHFISSSDISRSNVSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRYHPFDPVFIAQSHGNYIAIFSSNPPFKLDKYKRYESHGVSGFPIKCNFSLDGETLASGSSDGCIYFYSYRSSDLIRKIKAYEQACLDVAFHPHVPNVIASCGWNGEISVFE 431
Match: F6H2H0 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46450.1}))
HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 250/375 (66.67%), Postives = 306/375 (81.60%), Query Frame = 0
Query: 110 LPGRYVSKRERAAAA-ATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
+ GRY+SKRER+ + A +PP P S+S +GSIS D+ DIL SLR Q KG S G+ E LS+ L H K+VN +QWS TH+HLLASAGMDH IC+WN WS++++KAR S+H AAVKD+KW + GLS+LSCGYDCSSRL DVEKGL+ +F EDQVVGV+K HP+NSNLFLSGGSKG L+LWDIRT K H+Y+RGLGPILD+EF A QF+SSSDVS N++ENSI+VWDVSRQVPLSNQVY EAYTCP I+CH S+ +F+AQSNGNYIAIFS+ PFKLD+Y+RYE+HGVSGFP++C+FSLDGE+LASGSSDGCIY Y+ RS+EL++K+K YEQACIDVAFHP++PNVIA+C W+G +SV E
Sbjct: 48 IAGRYISKRERSLLSPALSPPLPNPAA----SASPVMGSISDSDLPRDILSSLRHQAKGRSQLGRISERLSVDLKSHKKSVNTIQWSPTHAHLLASAGMDHAICIWNAWSRDQKKAREFSYHNAAVKDVKWLQQGLSVLSCGYDCSSRLIDVEKGLQTQIFTEDQVVGVIKLHPDNSNLFLSGGSKGRLRLWDIRTGKVVHEYIRGLGPILDIEFTVNAKQFISSSDVSGSNMSENSIVVWDVSRQVPLSNQVYVEAYTCPCIRCHPSDPFFIAQSNGNYIAIFSSCPPFKLDKYKRYENHGVSGFPIKCNFSLDGEKLASGSSDGCIYLYDYRSSELVQKIKAYEQACIDVAFHPLLPNVIAACGWDGAVSVFE 418
Match: A0A6A3AGG6 ((Indole-3-acetic acid-amido synthetase GH3.6-like {ECO:0000313|EMBL:KAE8703206.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 253/384 (65.89%), Postives = 306/384 (79.69%), Query Frame = 0
Query: 102 RPEAPPPMLPGRYVSKRERAAAAATTPPDPLTTTLITPS--SSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
R EAP LPGRY+SKRERA + D P + S IGSIS D+ +D+L S+ + KG + + PE L+++L GH KAV A+ WS TH+HLLAS+GMDHTI +WN WS++ +KARVL+ H AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE MF++DQ VGV+KFHP+NSNLFLSGGSKG L+LWD+RT K H+Y+RGLGPILDVEF QFVSSSDVS GN++ENSI+VWD+SRQVPLSNQVYAEAYTCP ++ H + YFVAQSNGNYIAIFS+ PFKLD+Y+RYESHGV+GFP++C+FSLDGE+L SGSSDG IYFYNSRS LIKK+K YE+ACIDV FHP++ NVIASCSWNG++SV E
Sbjct: 54 REEAP---LPGRYISKRERALSGTVPEADESKQNTRGPHVITQSVIGSISKSDVPHDVLSSMWHKPKGRTQLSQIPEKLTIALNGHAKAVTAVHWSPTHAHLLASSGMDHTISIWNVWSRDHKKARVLNFHNAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLESQMFRDDQAVGVIKFHPDNSNLFLSGGSKGRLRLWDVRTGKVVHEYIRGLGPILDVEFSTDGKQFVSSSDVSGGNISENSIIVWDISRQVPLSNQVYAEAYTCPCVRYHPFDPYFVAQSNGNYIAIFSSNPPFKLDKYKRYESHGVAGFPIKCNFSLDGEKLVSGSSDGSIYFYNSRSPALIKKIKAYEEACIDVVFHPILSNVIASCSWNGDVSVFE 434
Match: A0A6P5Y3J6 ((WD repeat-containing protein 25-like {ECO:0000313|RefSeq:XP_022735003.1}))
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 260/387 (67.18%), Postives = 312/387 (80.62%), Query Frame = 0
Query: 102 RPEAPPPMLPGRYVSKRERAAA-----AATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
R EAP +PGRY+SKRERA + AA PD IT +GSIS +DI + +L S++ + KG + + PE LS++L GH KAVNA+ WS TH+HLLASAGMD TI +WN WS++++KARV S H AAVKD+KWS+LGL +LSCGYDCSSRL DVEKGLE FKEDQVVGV+KF+P+NSNLFLSGGSKG L+LWD+RT K H+YVRGLGPILDVEFIN QFVSSSDVS GNV+ENSI+VWD+SRQVPLSNQVYAEAYTCP ++ H + YFVAQSNGNYIAIFS+ PFKLD+Y+RYESH VSGFPV+C+FSLDG++L SGSSDG +YFYNSRS+ L+KK+K YEQAC+DV FHP++ NVIASCSWNG++SV E
Sbjct: 58 REEAP---VPGRYISKRERALSVSVPLAAEPNPDHQDPRFIT---QPVLGSISDLDIPHYVLSSMQHKPKGITQLSQIPEKLSIALHGHAKAVNAVCWSPTHAHLLASAGMDQTIHIWNVWSRDQKKARVFSFHNAAVKDVKWSKLGLFVLSCGYDCSSRLIDVEKGLETQNFKEDQVVGVIKFNPDNSNLFLSGGSKGRLRLWDVRTGKVVHEYVRGLGPILDVEFINDGKQFVSSSDVSGGNVSENSIIVWDISRQVPLSNQVYAEAYTCPCVRYHPFDPYFVAQSNGNYIAIFSSSPPFKLDKYKRYESHAVSGFPVKCNFSLDGDKLVSGSSDGSMYFYNSRSSVLVKKIKAYEQACVDVVFHPILSNVIASCSWNGDVSVFE 438
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BSK6 | E-Value: 0.000e+0, PID: 60.46 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7185... [more] |
| A0A200QBW9 | E-Value: 0.000e+0, PID: 56.40 | (WD40 repeat {ECO:0000313|EMBL:OVA07959.1})[more] |
| A0A5J4ZY79 | E-Value: 0.000e+0, PID: 68.72 | NAD(P)H dehydrogenase (quinone) {ECO:0000256|ARBA:... [more] |
| A0A2R6PTA2 | E-Value: 0.000e+0, PID: 58.69 | (WD repeat-containing protein {ECO:0000313|EMBL:PS... [more] |
| A0A2U1KCL2 | E-Value: 0.000e+0, PID: 58.44 | (Transducin/WD40 repeat-like superfamily protein {... [more] |
| A0A834ZL54 | E-Value: 0.000e+0, PID: 66.50 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8409... [more] |
| A0A1U7YMD2 | E-Value: 0.000e+0, PID: 57.61 | (WD repeat-containing protein 25 isoform X1 {ECO:0... [more] |
| F6H2H0 | E-Value: 0.000e+0, PID: 66.67 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4645... [more] |
| A0A6A3AGG6 | E-Value: 0.000e+0, PID: 65.89 | (Indole-3-acetic acid-amido synthetase GH3.6-like ... [more] |
| A0A6P5Y3J6 | E-Value: 0.000e+0, PID: 67.18 | (WD repeat-containing protein 25-like {ECO:0000313... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |