Resource Type:
Polypeptide
Name:
DCAR_008871
Identifier:
DCAR_008871.mRNA-protein
Sequence:
MGICMGKSAKCAHASSNQFMEHIEMQELETLTQIQDPPIGFNLLPNLKPP
NKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQDGDDSHSGWAP
FDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGV
FTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKR
GLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYL
FLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKA
AIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH
RSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYR
IYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALA
TVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQV
VKSEIKGKQNAGRWLWLGTC*
Sequence Length:
521
Sequence Checksum:
24af98b2f699a7ed0f6cc52f86968379
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_008871, derives from mRNA, DCAR_008871. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BMD8 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:MPA69266.1}))
HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 382/496 (77.02%), Postives = 436/496 (87.90%), Query Frame = 0
Match: A0A5B7BMD8 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:MPA69266.1}))
HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 382/496 (77.02%), Postives = 436/496 (87.90%), Query Frame = 0
Query: 28 LETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSP--QDGDDSH-----SGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWLW 516
++ T PP G NL P LKPP+KTL F+QIS L +TF++YASFHASRKPPSIVKSVL P Q + ++ +GWAPF+ SHGPHRLGELDLAFLSAYSVGMYFSGHIGD+I+LR+FL++GM+GSGVFTVVFGLGYW +VHVLGFFV VQIVCGLFQSIGWPCVVA++GNWFGKSKRGLIMG W+SHTSVGNI+GSVVASS+L FGWGWSFVLPGI I+++A++++LFLVV PED+G+E KEVEM+VEG +LVNSEK E E L + ENV+S A IGFLEAWRLP V FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILSTIFDVGGVIGG+LAGYISD+IEARAVTS +FL+LS+P L+ YRIYGS+SMF N+ LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+FFML+LS+ +AG+ L VVK+EIKGK N G+WLW
Sbjct: 1 MQPKTLTLAPPPGLNLFPTLKPPHKTLIFYQISALLITFISYASFHASRKPPSIVKSVLGPEIQSRNTTYPIGIDTGWAPFNGSHGPHRLGELDLAFLSAYSVGMYFSGHIGDRIDLRLFLTIGMLGSGVFTVVFGLGYWLNVHVLGFFVLVQIVCGLFQSIGWPCVVAVVGNWFGKSKRGLIMGVWSSHTSVGNIMGSVVASSMLRFGWGWSFVLPGIFIMMMAIVVFLFLVVNPEDVGIEFPGKEVEMNVEGVSLVNSEKVEHEEAGLLQSENVDSLAPIGFLEAWRLPSVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVIGGILAGYISDVIEARAVTSFVFLLLSIPTLIFYRIYGSVSMFTNITLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILSIFLAGMFLIHVVKTEIKGKLNEGKWLW 496
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AWH4 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 378/492 (76.83%), Postives = 433/492 (88.01%), Query Frame = 0
Match: A0A5J5AWH4 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 378/492 (76.83%), Postives = 433/492 (88.01%), Query Frame = 0
Query: 38 PIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQ---------DGDDS----HSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWLW 516
P G L P LKPP+KTL F+QISVL +TFL+YASFHASRKPPSIVKSVL P+ D++ +GWAPF+ SHGPHRLGELDLAFLSAYSVGMYFSGHIGD+I++R+FL++GM+GSGVFTVVFGLGYW +VHVLGFFV VQI+CGLFQSIGWPCVV+++GNWFGKSKRGLIMG WNSHTSVGNI+GSVVASS+LGFGWGWSFVLPGI I+++A++++LFL+V PED+G+EL +EVEMSVEG +LVNSEK E E ENV+S AAIGFLEAWRLPGV FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS+++AGILST+FDVGGV GG+LAGYISD+I ARAVTS FL+LS+PAL+ YRIYGS+SMF+N+ LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIID TGSVG ALGPLLAGYISTRGWNS+FFML+LSLS+AG+ L VVK+EIKGKQN G+W+W
Sbjct: 3 PPGLELFPTLKPPHKTLIFYQISVLLITFLSYASFHASRKPPSIVKSVLGPEIQFKNTSSVQLDENPIGIDTGWAPFNGSHGPHRLGELDLAFLSAYSVGMYFSGHIGDRIDIRLFLTIGMLGSGVFTVVFGLGYWLNVHVLGFFVLVQIMCGLFQSIGWPCVVSVVGNWFGKSKRGLIMGVWNSHTSVGNIIGSVVASSMLGFGWGWSFVLPGIFIMVMAIVVFLFLLVNPEDVGIELPGEEVEMSVEGVSLVNSEKDEHEEAGPIHSENVDSLAAIGFLEAWRLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSNKTAGILSTVFDVGGVTGGILAGYISDMIGARAVTSFGFLLLSIPALIFYRIYGSVSMFSNIMLMFLSGLLVNGPYSLITTAVAADLGTQSMIKGNSRALATVTAIIDATGSVGGALGPLLAGYISTRGWNSVFFMLILSLSLAGMFLIHVVKTEIKGKQNEGKWIW 494
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EX28 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 374/501 (74.65%), Postives = 429/501 (85.63%), Query Frame = 0
Match: A0A4S4EX28 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 374/501 (74.65%), Postives = 429/501 (85.63%), Query Frame = 0
Query: 28 LETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQ---------DGDDS----HSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWL 515
++ T PP G NL P LKPP++TLTF++ SVL +TF+AYASFHASRKPPSIVKSVL P+ DD+ +GWAPF+ S G HRLGELDL FL AYSVGMYFSGHIGD+I+LR+FL++GM+GSGVFTV+FGLGYW +VHVLGFF+ VQ+ CGLFQSIGWPCVVA++GNWFGKSKRGLIMG WNSHTSVGNI+GSV+ASS+LG GWGWSFVLPG+ IL+ +++YLFLVV PE++GLEL+ EVEM+VEG LV+SEK ++ L + EN +S AAIGFLEAWRLP V FAFCLFFSKLVAYTFLYWLPFYIRHTA+AGVHLS ++AGILSTIFDVGGVIGGVLAGYISD+IEARAVTSV+FL+LS+PALV YRIYGSISM NV LM LSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+FFML++S+SIA LLL VVK+EIKGK + G+WL
Sbjct: 1 MQAKTLTLAPPPGLNLFPTLKPPHRTLTFYRFSVLLITFIAYASFHASRKPPSIVKSVLGPEIRPQNTTSLQFDDNPFEIDTGWAPFNGSDGAHRLGELDLTFLLAYSVGMYFSGHIGDRIDLRLFLTIGMMGSGVFTVIFGLGYWLNVHVLGFFLLVQVQCGLFQSIGWPCVVAVVGNWFGKSKRGLIMGVWNSHTSVGNIIGSVLASSMLGSGWGWSFVLPGVFILMAGIVVYLFLVVSPENVGLELSGMEVEMNVEGVPLVDSEKVDSGEEALLQSENSDSLAAIGFLEAWRLPSVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAIAGVHLSDKTAGILSTIFDVGGVIGGVLAGYISDMIEARAVTSVLFLLLSIPALVFYRIYGSISMLTNVVLMLLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSISIAALLLIHVVKTEIKGKLSEGKWL 501
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PQ92 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 362/502 (72.11%), Postives = 426/502 (84.86%), Query Frame = 0
Match: A0A5N6PQ92 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 362/502 (72.11%), Postives = 426/502 (84.86%), Query Frame = 0
Query: 25 MQELETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQDGDDSHSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMS--------VEGEALVNSEKKETEGVELHEGE--NVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWLW 516
M + +TLT + PP G L P+L PP KT+TFHQ S L +TF+AYA+FHASRKPPSIVKSVL P D + +GW PF+ S GPHRLGELDLAFLSAY++GMYFSGH GD+ +LR+FL++GM+GSG FT++FGLG+W DVH+LG+F+ +QI CG+FQSIGWPCVVA+MGNWFGKSKRGLIMG WNSHTSVGNIVGS+VASSVLGFGWGW+FVLPG LIL+V+ +++LFLVV PE IGLEL ++ E S EG ALV+ +K +E +GE + S AIGFLEAW+LPGV FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILSTIFD+GGVIGG+LAGYISD+IEARAVTS++FL LS+P LV YR+YG ISMF+++ LMFLSGLLVNGPY+LITTAVAADLGTQS+I GNSRALATV+AIIDGTGSVGAALGPLLAGYISTRGWNS+FFML+ SL IA LLL +VV++EIKGK N G+WLW
Sbjct: 1 MSDPKTLT-LDPPPPGLTLFPSLNPPQKTVTFHQFSTLLITFIAYAAFHASRKPPSIVKSVLGP-DLNSPETGWPPFNSSRGPHRLGELDLAFLSAYAIGMYFSGHAGDRFDLRIFLTIGMIGSGCFTLLFGLGFWLDVHLLGYFIMIQICCGVFQSIGWPCVVAVMGNWFGKSKRGLIMGIWNSHTSVGNIVGSIVASSVLGFGWGWAFVLPGFLILIVSAIVFLFLVVSPETIGLELPQEDEEESGMGMHTQHTEGMALVSLQKVASEDDNDADGELLSRSSSTAIGFLEAWKLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVIGGILAGYISDIIEARAVTSIIFLTLSIPVLVLYRLYGDISMFSSILLMFLSGLLVNGPYALITTAVAADLGTQSSIKGNSRALATVSAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLISSLLIADLLLIRVVRTEIKGKVNEGKWLW 500
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M562 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850} (Fragment))
HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 368/479 (76.83%), Postives = 418/479 (87.27%), Query Frame = 0
Match: A0A6A4M562 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850} (Fragment))
HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 368/479 (76.83%), Postives = 418/479 (87.27%), Query Frame = 0
Query: 40 GFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQ---DGDDSHSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWL 515
G L P+LKPPNKTL+FHQISVL LTF AYA+FHASRKPPSIVKSVL PQ + +GW PFD S GPHRLGELDLAFLSAY+VGMY SGHIGD+I+LRVFL++GM+GSG FTVVFGLGY++ VHVLGF+V VQI+CGLFQSIGWPCVV+++GNW GKSKRGLIMG WNS TSVGNI+GSVVASSVLGFGWGWSFVLPG+ I+ V V++YLFLVV PE++GLEL KEVE++VEG LV SEK ET V L + EN +S AIGFLEAWRLP V FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH+++GILST FD+GGVIGG+LAG+ISD IEARA T++MFL+LS+P+L+ YRI+GSISM +NV LMFLSGLLVNGPYSLITTAV+ADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+F ML +S+SIA +LL VVK+EIK K N G+WL
Sbjct: 37 GLALFPSLKPPNKTLSFHQISVLLLTFAAYAAFHASRKPPSIVKSVLGPQPQTQNATADAGWPPFDGSRGPHRLGELDLAFLSAYAVGMYLSGHIGDRIDLRVFLTIGMMGSGFFTVVFGLGYFFSVHVLGFYVIVQIICGLFQSIGWPCVVSVVGNWSGKSKRGLIMGVWNSQTSVGNIIGSVVASSVLGFGWGWSFVLPGVFIVAVGVVVYLFLVVSPENVGLELEGKEVEVNVEGLPLVASEKVETGEVGLVQSENADSLGAIGFLEAWRLPNVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTSGILSTTFDIGGVIGGILAGFISDAIEARAFTALMFLLLSIPSLISYRIFGSISMISNVTLMFLSGLLVNGPYSLITTAVSADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFSMLTVSISIAAMLLIHVVKAEIKEKMNEGKWL 515
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QHT0 ((Glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:PSS08169.1}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 372/509 (73.08%), Postives = 426/509 (83.69%), Query Frame = 0
Match: A0A2R6QHT0 ((Glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:PSS08169.1}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 372/509 (73.08%), Postives = 426/509 (83.69%), Query Frame = 0
Query: 26 QELETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQ------------------DGDDSHSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWLW 516
E +T T PP GF L P LKPP++TLTF+QIS L LTF AYA+FHASRKPPSIVKSVL P+ + ++ +GWAPF+D G HRLGELDLAFLSAYS GMYF+GH+GD+++LRVFL++GM+GSGV TVV G GY+ DVH GFFV VQ+VCGLFQSIGWPCVVA++GNWFGKSKRGLIMG WNSHTS+GNI+GS+VASSVLGFGWGWSFVLPGI I+++ +++YLFLVV PE++G EL KEVEM+VEG LV EK E + E EN +S AAIGFLEAWRLP V FA CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILST+FDVGGVIGGV+AGYISD+IEARAVTSV+FL+LS+PAL+ YRIYGSISM NV LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGS+GAALGPLLAGYISTRGWNS+FFML +S+SIA +LL QVVK+EIKGK N G+WL+
Sbjct: 1 MEAKTQTLTLTPPPGFTLFPFLKPPHRTLTFYQISALLLTFFAYAAFHASRKPPSIVKSVLCPEIQSPLNTTAAAATTTSDRNPIEAETGWAPFNDPRGAHRLGELDLAFLSAYSAGMYFAGHLGDRMDLRVFLAIGMLGSGVMTVVLGFGYFLDVHDFGFFVVVQVVCGLFQSIGWPCVVAVVGNWFGKSKRGLIMGLWNSHTSLGNIIGSLVASSVLGFGWGWSFVLPGIFIVVMGIVVYLFLVVSPENVGFELVGKEVEMNVEGVPLVGLEKVECGEEGIVESENTDSFAAIGFLEAWRLPSVAPFAVCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTVFDVGGVIGGVMAGYISDMIEARAVTSVVFLLLSIPALIFYRIYGSISMLTNVGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSIGAALGPLLAGYISTRGWNSVFFMLTVSISIAAMLLIQVVKTEIKGKLNEGKWLF 509
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DSZ8 ((Major facilitator superfamily protein {ECO:0000313|EMBL:GFS41710.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 372/509 (73.08%), Postives = 426/509 (83.69%), Query Frame = 0
Match: A0A7J0DSZ8 ((Major facilitator superfamily protein {ECO:0000313|EMBL:GFS41710.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 372/509 (73.08%), Postives = 426/509 (83.69%), Query Frame = 0
Query: 26 QELETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQ------------------DGDDSHSGWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEALVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGRWLW 516
E + T PP GF L P LKPP++TLTF+QIS L LTF AYA+FHASRKPPSIVKSVL P+ + ++ +GWAPF+D G HRLGELDLAFLSAYS GMYF+GH+GD+++LRVFL++GM+GSGV TVV G GY+ DVH GFFV VQ+VCGLFQSIGWPCVVA++GNWFGKSKRGLIMG WNSHTS+GNI+GS+VASSVLGFGWGWSFVLPGI I+++ +++YLFLVV PE++G EL KEVEM+VEG LV EK E + E EN +S AAIGFLEAWRLP V FA CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILST+FDVGGVIGGV+AGYISD+IEARAVTSV+FL+LS+PAL+ YRIYGSISMF NV LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGS+GAALGPLLAGYISTRGWNS+FFML +S+SIA +LL QVVK+EIKGK N G+WL+
Sbjct: 1 MEAKPQTLPLAPPPGFTLFPFLKPPHRTLTFYQISALLLTFFAYAAFHASRKPPSIVKSVLCPEIQPPLNTTAAAATTTSDRNPIEAETGWAPFNDPRGAHRLGELDLAFLSAYSAGMYFAGHLGDRMDLRVFLAIGMLGSGVMTVVLGFGYFLDVHDFGFFVVVQVVCGLFQSIGWPCVVAVVGNWFGKSKRGLIMGLWNSHTSLGNIIGSLVASSVLGFGWGWSFVLPGIFIVVMGIVVYLFLVVSPENVGFELVGKEVEMNVEGVPLVGLEKVECGEEGIVESENTDSFAAIGFLEAWRLPSVAPFAVCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTVFDVGGVIGGVMAGYISDMIEARAVTSVVFLLLSIPALIFYRIYGSISMFTNVGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSIGAALGPLLAGYISTRGWNSVFFMLTVSISIAAMLLIQVVKTEIKGKLNEGKWLF 509
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438J8F4 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:RVX05249.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Match: A0A438J8F4 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:RVX05249.1}))
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Query: 28 LETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQDGDDSHS---GWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEA---LVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGR 513
+++ TQ P G NL P LKPP+KTLTFH+IS L +TF+AYASFHASRKPPSIVKSVLSP+ +S S GWAPF+ HG HRLGELDLAFLS+YS+GMYFSGH GD+++LR+FL +GM+GSG+ T++FGLG W +VH LGFFV VQIVCGLFQSIGWPCVVA++GNWFGK KRGLIMG WNSHTSVGNIVGSVV+S+VL FGWGWSFVLPGILI+++ + +++FLVV PED+G EL KE+EM+VE E+ + NSEK E+E L + +S AIGFLEAWRLPGV FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILSTIFDVGGV+GG+LAGYISD IEARAVTS++FL+LS+PALV YR+YGSISM+ N+ LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+FFML+L++ +AGL L ++VK+EIK K N G+
Sbjct: 1 MQSNTQALAP--GLNLFPTLKPPHKTLTFHRISALLITFVAYASFHASRKPPSIVKSVLSPEIQSNSTSVDTGWAPFNGPHGTHRLGELDLAFLSSYSIGMYFSGHAGDRLDLRLFLVIGMLGSGILTIIFGLGDWLNVHKLGFFVGVQIVCGLFQSIGWPCVVAVLGNWFGKEKRGLIMGLWNSHTSVGNIVGSVVSSAVLEFGWGWSFVLPGILIIIIGIFVFMFLVVNPEDLGFELLAKEIEMNVEVESNKSMENSEKVESEDAGLLPSDVTDSSGAIGFLEAWRLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVLGGILAGYISDKIEARAVTSIIFLLLSIPALVLYRVYGSISMYTNIGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILAICLAGLFLIRIVKTEIKSKLNEGK 490
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HCI4 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Match: F6HCI4 (MFS domain-containing protein {ECO:0000259|PROSITE:PS50850})
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Query: 28 LETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQDGDDSHS---GWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEA---LVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGR 513
+++ TQ P G NL P LKPP+KTLTFH+IS L +TF+AYASFHASRKPPSIVKSVLSP+ +S S GWAPF+ HG HRLGELDLAFLS+YS+GMYFSGH GD+++LR+FL +GM+GSG+ T++FGLG W +VH LGFFV VQIVCGLFQSIGWPCVVA++GNWFGK KRGLIMG WNSHTSVGNIVGSVV+S+VL FGWGWSFVLPGILI+++ + +++FLVV PED+G EL KE+EM+VE E+ + NSEK E+E L + +S AIGFLEAWRLPGV FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILSTIFDVGGV+GG+LAGYISD IEARAVTS++FL+LS+PALV YR+YGSISM+ N+ LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+FFML+L++ +AGL L ++VK+EIK K N G+
Sbjct: 1 MQSNTQALAP--GLNLFPTLKPPHKTLTFHRISALLITFVAYASFHASRKPPSIVKSVLSPEIQSNSTSVDTGWAPFNGPHGTHRLGELDLAFLSSYSIGMYFSGHAGDRLDLRLFLVIGMLGSGILTIIFGLGDWLNVHKLGFFVGVQIVCGLFQSIGWPCVVAVLGNWFGKEKRGLIMGLWNSHTSVGNIVGSVVSSAVLEFGWGWSFVLPGILIIIIGIFVFMFLVVNPEDLGFELLAKEIEMNVEVESNKSMENSEKVESEDAGLLPSDVTDSSGAIGFLEAWRLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVLGGILAGYISDKIEARAVTSIIFLLLSIPALVLYRVYGSISMYTNIGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILAICLAGLFLIRIVKTEIKSKLNDGK 490
BLAST of DCAR_008871 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438E7P5 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:RVW43805.1}))
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Match: A0A438E7P5 ((Putative glycerol-3-phosphate transporter 5 {ECO:0000313|EMBL:RVW43805.1}))
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 364/492 (73.98%), Postives = 425/492 (86.38%), Query Frame = 0
Query: 28 LETLTQIQDPPIGFNLLPNLKPPNKTLTFHQISVLFLTFLAYASFHASRKPPSIVKSVLSPQDGDDSHS---GWAPFDDSHGPHRLGELDLAFLSAYSVGMYFSGHIGDQINLRVFLSVGMVGSGVFTVVFGLGYWWDVHVLGFFVAVQIVCGLFQSIGWPCVVAIMGNWFGKSKRGLIMGAWNSHTSVGNIVGSVVASSVLGFGWGWSFVLPGILILLVAVLIYLFLVVCPEDIGLELTDKEVEMSVEGEA---LVNSEKKETEGVELHEGENVESKAAIGFLEAWRLPGVVQFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHRSAGILSTIFDVGGVIGGVLAGYISDLIEARAVTSVMFLILSVPALVCYRIYGSISMFANVFLMFLSGLLVNGPYSLITTAVAADLGTQSTITGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSIFFMLVLSLSIAGLLLFQVVKSEIKGKQNAGR 513
+++ TQ P G NL P LKPP+KTLTFH+IS L +TF+AYASFHASRKPPSIVKSVLSP+ +S S GWAPF+ HG HRLGELDLAFLS+YS+GMYFSGH GD+++LR+FL +GM+GSG+ T++FGLG W +VH LGFFV VQIVCGLFQSIGWPCVVA++GNWFGK KRGLIMG WNSHTSVGNIVGSVV+S+VL FGWGWSFVLPGILI+++ + +++FLVV PED+G EL KE+EM+VE E+ + NSEK E+E L + +S AIGFLEAWRLPGV FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH++AGILSTIFDVGGV+GG+LAGYISD IEARAVTS++FL+LS+PALV YR+YGSISM+ N+ LMFLSGLLVNGPYSLITTAVAADLGTQS I GNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS+FFML+L++ +AGL L ++VK+EIK K N G+
Sbjct: 1 MQSNTQALAP--GLNLFPTLKPPHKTLTFHRISALLITFVAYASFHASRKPPSIVKSVLSPEIQSNSTSVDTGWAPFNGPHGTHRLGELDLAFLSSYSIGMYFSGHAGDRLDLRLFLVIGMLGSGILTIIFGLGDWLNVHKLGFFVGVQIVCGLFQSIGWPCVVAVLGNWFGKEKRGLIMGLWNSHTSVGNIVGSVVSSAVLEFGWGWSFVLPGILIIIIGIFVFMFLVVNPEDLGFELLAKEIEMNVEVESNKSMENSEKVESEDAGLLPSDVTDSSGAIGFLEAWRLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVLGGILAGYISDKIEARAVTSIIFLLLSIPALVLYRVYGSISMYTNIGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILAICLAGLFLIRIVKTEIKSKLNDGK 490
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BMD8 | E-Value: 0.000e+0, PID: 77.02 | (Putative glycerol-3-phosphate transporter 5 {ECO:... [more] |
| A0A5J5AWH4 | E-Value: 0.000e+0, PID: 76.83 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A4S4EX28 | E-Value: 0.000e+0, PID: 74.65 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5N6PQ92 | E-Value: 0.000e+0, PID: 72.11 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6A4M562 | E-Value: 0.000e+0, PID: 76.83 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2R6QHT0 | E-Value: 0.000e+0, PID: 73.08 | (Glycerol-3-phosphate transporter 5 {ECO:0000313|E... [more] |
| A0A7J0DSZ8 | E-Value: 0.000e+0, PID: 73.08 | (Major facilitator superfamily protein {ECO:000031... [more] |
| A0A438J8F4 | E-Value: 0.000e+0, PID: 73.98 | (Putative glycerol-3-phosphate transporter 5 {ECO:... [more] |
| F6HCI4 | E-Value: 0.000e+0, PID: 73.98 | MFS domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A438E7P5 | E-Value: 0.000e+0, PID: 73.98 | (Putative glycerol-3-phosphate transporter 5 {ECO:... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |