DCAR_009523

Resource Type: 
Polypeptide
Name: 
DCAR_009523
Identifier: 
DCAR_009523.mRNA-protein
Sequence: 
MALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALID
AATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLS
VMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIV
LIGDNSITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGA
SKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGL
LASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKR
YDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTD
SLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGY
FSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPP
AELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNF
VAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL*
Sequence Length: 
542
Sequence Checksum: 
e2260a636fcf02bdc6edc400d578322e
View location in JBrowse: 
DCARv2_Chr3:8379156..8381978-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_009523, derives from mRNA, DCAR_009523.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PZD6 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 438/541 (80.96%), Postives = 495/541 (91.50%), Query Frame = 0
 
Query:    2 ALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDNSITNS-KIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            A+DPRSGFCK++S FYSKRKPI LP ++++DVTTFISS+SHHG +A IDAATGR +TFP++W+AVE+V++ LS +G+RKG VILLLSPNSI+FPIVCL+V+SLGAIITTTNPLNTT EIAKQIADSKP LAFT+PEL+ K+ADS LPI+LIG+   + S KI+     MM T++ ++RVK+RVT DDTATLLYSSGTTGASKGV+SSHRNLI MV+T+  RF LE G Q FICTVPMFHIYGLAAFATGLLASGST+VVLSKFEM EMLSAI  Y+ATYLPLVPPILVALVN ADQ+ ++YDL +LQSVLSGGAPLSKEVIEGFV+++P+V ILQGYGLTESTGIGASTDSL+ESRRYGTAGMLSPSMEAKIV+P +GE L VNRTGELWL+GPTIMKGYFSNAEATA+TLDS GWLRTGDLCYID+DGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPD EVGQFPMAYVVRK+GSD+S SAVM+FVAKQVAPYK+IRRVAFVAS+PKNPSGKILRKDLIKLATSKL
Sbjct:    8 AIDPRSGFCKSDSVFYSKRKPIPLPSNESLDVTTFISSRSHHGKIAFIDAATGRHLTFPEVWSAVENVSSCLSAMGIRKGHVILLLSPNSIFFPIVCLAVVSLGAIITTTNPLNTTREIAKQIADSKPVLAFTIPELVPKIADSNLPIILIGEKKTSTSVKIVNTLSQMMVTKSGESRVKERVTLDDTATLLYSSGTTGASKGVISSHRNLIAMVETVLSRFNLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFEMDEMLSAIGTYRATYLPLVPPILVALVNGADQVRRKYDLGTLQSVLSGGAPLSKEVIEGFVERYPTVGILQGYGLTESTGIGASTDSLEESRRYGTAGMLSPSMEAKIVDPASGEALTVNRTGELWLRGPTIMKGYFSNAEATASTLDSNGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDREVGQFPMAYVVRKSGSDLSESAVMDFVAKQVAPYKRIRRVAFVASIPKNPSGKILRKDLIKLATSKL 548
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GIE5 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 919.072 bits (2374), Expect = 0.000e+0
Identity = 437/541 (80.78%), Postives = 496/541 (91.68%), Query Frame = 0
 
Query:    2 ALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGD-NSITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            A+D RSGFCK++S FYSKRKPI LP ++++DVTTFISS+SHHG +A IDAATGR +TFP++W+AVE+V++ LS +G+RKG VILLLSPNSI+FPIVCL+V+SLGA+ITTTNPLNTT EIAKQIADSKP LAFT+PEL+ K+ADS LPI+LIG+ N+ T+ KI+     MM T++ ++RVK+RVT DDTATLLYSSGTTGASKGV+SSHRNLI MV+T+  RF LE G Q FICTVPMFHIYGLAAFATGLLASGST+VVLSKFEM EMLSAI  Y+ATYLPLVPPILVALVN ADQ+ ++YDL +LQSVLSGGAPLSKEVIEGFV+++P+V ILQGYGLTESTGIGASTDSL+ESRRYGTAGMLSPSMEAKIV+P +GE L VNRTGELWL+GPTIMKGYFSNAEATA+TLDSEGWLRTGDLCYID+DGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPD EVGQFPMAYVVRK+GSD+S SAVM+FVAKQVAPYK+IRRVAFV S+PKNPSGKILRKDLIKLATSKL
Sbjct:    8 AIDSRSGFCKSDSVFYSKRKPIPLPSNESLDVTTFISSRSHHGKIAFIDAATGRHLTFPEVWSAVENVSSCLSAMGIRKGHVILLLSPNSIFFPIVCLAVVSLGAVITTTNPLNTTREIAKQIADSKPVLAFTIPELVPKIADSNLPIILIGEKNTSTSVKIVNTLSQMMVTKSGESRVKERVTLDDTATLLYSSGTTGASKGVISSHRNLIAMVETVLSRFNLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFEMDEMLSAIGTYRATYLPLVPPILVALVNGADQVRRKYDLGTLQSVLSGGAPLSKEVIEGFVERYPTVGILQGYGLTESTGIGASTDSLEESRRYGTAGMLSPSMEAKIVDPASGEALTVNRTGELWLRGPTIMKGYFSNAEATASTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDREVGQFPMAYVVRKSGSDLSESAVMDFVAKQVAPYKRIRRVAFVVSIPKNPSGKILRKDLIKLATSKL 548
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BTN1 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 914.45 bits (2362), Expect = 0.000e+0
Identity = 435/542 (80.26%), Postives = 493/542 (90.96%), Query Frame = 0
 
Query:    3 LDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDNSITN---SKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            +DPRSGFCK+NS FYSKRKPI LP +Q++DVTTFISS++HHG+ A IDAATGR +TF ++W AV+SVA+ LS +G+RKG VILLLSPNSI+FP+VCLSVMSLGAIITTTNPLNT  EIAKQIADSKP LAFT  +L+ KLAD+ LPI+LIG++  ++   +KI+   E MM+ +  +NRVKDRVT DDTATLLYSSGTTGASKGVVSSHR+LI MVQT+  RF LE+G Q FICTVPMFHIYGLAAFATGLLASGSTVVVLS+F+M EMLSAI KY+ATYLPLVPPILVALVN ADQI ++YDL +LQSVLSGGAPLSKEVIEGF +++P+V+ILQGYGLTESTG+GASTDSL+ESRRYGTAGMLSPSMEAKIV+PETGE L VNRTGELWL+GPTIMKGYFSNAEATA+TLDS+GWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEI DAAVIPFPDE+VGQ+PMAYVVRK+GSD+S S VM+F+AKQVAPYK+IRRVAF AS+PKNPSGKILRKDLIKLATSKL
Sbjct:    6 IDPRSGFCKSNSIFYSKRKPIPLPPNQSVDVTTFISSRAHHGNTAFIDAATGRHLTFSEVWRAVDSVASCLSQMGIRKGHVILLLSPNSIFFPVVCLSVMSLGAIITTTNPLNTNREIAKQIADSKPVLAFTTHQLIPKLADTNLPIILIGESPRSHNDSAKIVTTLEDMMKKQPSENRVKDRVTLDDTATLLYSSGTTGASKGVVSSHRSLIAMVQTVVSRFNLEKGEQTFICTVPMFHIYGLAAFATGLLASGSTVVVLSRFDMDEMLSAIGKYRATYLPLVPPILVALVNGADQIKRKYDLGTLQSVLSGGAPLSKEVIEGFAERYPAVSILQGYGLTESTGVGASTDSLEESRRYGTAGMLSPSMEAKIVDPETGEALPVNRTGELWLRGPTIMKGYFSNAEATASTLDSDGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIVDAAVIPFPDEKVGQYPMAYVVRKSGSDLSESRVMDFIAKQVAPYKRIRRVAFAASIPKNPSGKILRKDLIKLATSKL 547
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGD8 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 432/540 (80.00%), Postives = 487/540 (90.19%), Query Frame = 0
 
Query:    4 DPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDN--SITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            DPRSGFCK+NS FYSKRKPI LP + ++DVTTFISS++HHG  A IDAATGR +TF ++W+AV+SVA+ LS +G+RKG VILLLSPNSI+FP+VCLSVMSLGAIITTTNPLNT  EIAKQ+ADSKP LAFT  +L+ KLAD+ L I+LIG++     ++KI+   E MM+ +  +NRVKDRVT DDTATLLYSSGTTGASKGVVSSHRNLI MVQT+  RF L+QG Q FICTVPMFHIYGLAAFATG+LASGSTVVVLS+F+M EMLS+I KY+ATYLPLVPPILVALVN ADQI ++YDL  L+ VLSGGAPLSKEVIEGFV+++P VAILQGYGLTESTG+GASTDSL+ESRRYGTAGMLSPSMEAKIV+PE+GE L VNRTGELWL+GPTIMKGYFSNAEATA+TLDS+GWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEI DAAVIPFPD+EVGQ+PMAYVVRKTGSD+S SAVM F+AKQVAPYK+IRRV+F ASVPKNPSGKILRKDLIKLATSKL
Sbjct:    5 DPRSGFCKSNSIFYSKRKPIPLPPNHSVDVTTFISSRAHHGKAAFIDAATGRHLTFSEVWSAVDSVASCLSEMGIRKGHVILLLSPNSIFFPVVCLSVMSLGAIITTTNPLNTNREIAKQVADSKPVLAFTTHQLIPKLADTNLRIILIGESPRDSYSAKILTTLEDMMKKQPSENRVKDRVTLDDTATLLYSSGTTGASKGVVSSHRNLIAMVQTVLSRFNLDQGEQTFICTVPMFHIYGLAAFATGMLASGSTVVVLSRFDMDEMLSSIGKYRATYLPLVPPILVALVNGADQIKRKYDLGKLEWVLSGGAPLSKEVIEGFVERYPQVAILQGYGLTESTGMGASTDSLEESRRYGTAGMLSPSMEAKIVDPESGESLPVNRTGELWLRGPTIMKGYFSNAEATASTLDSDGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIVDAAVIPFPDKEVGQYPMAYVVRKTGSDLSESAVMEFIAKQVAPYKRIRRVSFAASVPKNPSGKILRKDLIKLATSKL 544
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6B5X7 ((4-coumarate--CoA ligase-like 5 {ECO:0000313|RefSeq:XP_022772588.1}))

HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 429/544 (78.86%), Postives = 489/544 (89.89%), Query Frame = 0
 
Query:    1 MALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGD---NSITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            + +DPRSGFC++NSTFYSKR PI LP + ++DVTTFIS+++HHG  A IDA TGR +TF +LW AV+SVAT LS++G+RKG V+LLLSPNSI+FPIVCLSVMSLGAIITTTNPLN  AEI KQIADSKP LAFT+P+LL KLA S +PIVL+ D   N++  +KI+     MM+TE   +RV+DRV QDDTATLLYSSGTTGASKGVVSSHRNLI MVQT+ GRF LE+G Q FICTVPMFHIYGL AFATGLLASGSTV+VLSKFEMH+MLS IEKY+ATYLPLVPPILVA+VN ADQI K+YDLSSL S LSGGAPLSKEVIEGF++K+P+V ILQGYGLTESTGIGASTDSL+ESRRYGTAGMLSPSMEAKIV+P++G+ L VN+TGELWL+GP+IMKGYFSN EAT +TLDSEGWL+TGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLL+HPEI DAAVIPFPD+EVGQFPMAYVVRK GS++S +AVM+FVA+QVAPYK+IR+VAFVAS+PKNPSGKILRKDLIKLATSKL
Sbjct:    7 LTIDPRSGFCRSNSTFYSKRNPIPLPRNDSLDVTTFISARAHHGKFAFIDAGTGRRLTFSELWRAVDSVATCLSDMGIRKGHVVLLLSPNSIFFPIVCLSVMSLGAIITTTNPLNMAAEIGKQIADSKPVLAFTIPQLLPKLAGSTIPIVLLDDSVNNNVGEAKIVTTLNQMMKTEPSGSRVRDRVNQDDTATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFSLEEGEQRFICTVPMFHIYGLVAFATGLLASGSTVIVLSKFEMHDMLSTIEKYRATYLPLVPPILVAMVNAADQIRKKYDLSSLHSALSGGAPLSKEVIEGFLEKYPNVKILQGYGLTESTGIGASTDSLEESRRYGTAGMLSPSMEAKIVDPDSGKALMVNQTGELWLRGPSIMKGYFSNPEATISTLDSEGWLKTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLSHPEILDAAVIPFPDKEVGQFPMAYVVRKPGSNLSETAVMDFVARQVAPYKRIRKVAFVASIPKNPSGKILRKDLIKLATSKL 550
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D631 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 432/538 (80.30%), Postives = 488/538 (90.71%), Query Frame = 0
 
Query:    3 LDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIG-DNSITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATS 539
            +DPRSGFCK++S FYSKR PI LP + ++DVTTFISS++H G +A IDA+T R +TF ++W AV+SVA++LS++G+RKG VILLLSPNSI+FPIVCLSVMSLGAIITTTNPLNTT EIAKQI+DS P LAFT P+L+ KLADS LPIVLIG D +  NSKI+   E MM+ +  ++RVK+RVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTI  RF LE G Q FICTVPMFHIYGLAAFATGLLASGST+VVLS+FEM EMLSAI KY+ATYLPLVPPIL+A+VN ADQI ++YDL +LQSVLSGGAPLS+EVIEGF +++P+V ILQGYGLTESTGIGASTDSL+ESRRYGTAG+LSPSMEAKIV+P+TGE L VNRTGELWL+GPT+MKGYFSNAEATA+TLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHP+IADAAVIPFPD EVGQFPMAYVVRK GSD+S + VM+FVAKQVAPYK+IRRVAFV S+PKNPSGKILRKDLIKLATS
Sbjct:    9 IDPRSGFCKSDSIFYSKRNPIPLPPNDSLDVTTFISSRAHPGKIAFIDASTARHLTFAEVWMAVDSVASSLSSMGIRKGHVILLLSPNSIFFPIVCLSVMSLGAIITTTNPLNTTREIAKQISDSNPVLAFTTPQLIPKLADSNLPIVLIGGDQNPPNSKIVTTLEDMMKKQPSESRVKERVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTILSRFNLEAGYQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSRFEMDEMLSAIGKYRATYLPLVPPILIAMVNGADQIRRKYDLGTLQSVLSGGAPLSREVIEGFAERYPTVGILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSMEAKIVDPDTGEALQVNRTGELWLRGPTVMKGYFSNAEATASTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPDIADAAVIPFPDREVGQFPMAYVVRKGGSDLSENDVMDFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATS 546
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FEU1 ((OPC-8:0 CoA ligase1 isoform 1 {ECO:0000313|EMBL:EOY15197.1}))

HSP 1 Score: 901.353 bits (2328), Expect = 0.000e+0
Identity = 428/543 (78.82%), Postives = 492/543 (90.61%), Query Frame = 0
 
Query:    2 ALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDNSITNS---KIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            A+DPRSGFC++NSTFYSKRKPI L  + ++DVTTFISS++HHG VA IDA TGR++TF +LW AV+SVAT LS++G+RKG V+LLLSPNSIYFP+VCLSVMSLGAIITTTNPLNT AEI KQI+DSKP LAFT+P+LL KLA S +PIVL+ D++I+N+   KI+     MM+TE   +RV+DRV QDDTATLLYSSGTTGASKGVVSSHRNLI MVQT+  RF L++  + FICTVPMFHIYGL AFATGLLASGSTV+VLSKFEMH+MLS IEKY+ATYLPLVPPILVA+VN ADQI K+YDLSSL S LSGGAPLSKEVIEGF+ K+P+V ILQGYGLTESTGIGASTDSL+ESR+YGTAGMLSPSMEAKIV+P++G+ L VN+TGELWL+GP+IMKGYFSN EATA+TLDSEGWL+TGD+CYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEI DAAVIPFPD+EVGQFPMAYVVRKTG ++S +AVM+FVA+QVAPYK+IR+VAFV+S+PKNPSGKILRKDLIKLATSKL
Sbjct:    8 AIDPRSGFCRSNSTFYSKRKPIPLAKNDSLDVTTFISSRAHHGKVAFIDAGTGRQLTFSELWRAVDSVATCLSDMGIRKGHVVLLLSPNSIYFPVVCLSVMSLGAIITTTNPLNTAAEIGKQISDSKPVLAFTIPQLLPKLAGSTIPIVLLDDHAISNASQAKIVTTLHQMMKTEPSGSRVRDRVNQDDTATLLYSSGTTGASKGVVSSHRNLIAMVQTVLNRFSLQE-EERFICTVPMFHIYGLVAFATGLLASGSTVIVLSKFEMHDMLSTIEKYRATYLPLVPPILVAMVNAADQIRKKYDLSSLHSALSGGAPLSKEVIEGFLDKYPTVKILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALTVNQTGELWLRGPSIMKGYFSNPEATASTLDSEGWLKTGDICYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIFDAAVIPFPDKEVGQFPMAYVVRKTGCNLSETAVMDFVARQVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKLATSKL 549
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HSW5 (4-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA00012959} (6.2.1.12 {ECO:0000256|ARBA:ARBA00012959}))

HSP 1 Score: 900.968 bits (2327), Expect = 0.000e+0
Identity = 433/538 (80.48%), Postives = 486/538 (90.33%), Query Frame = 0
 
Query:    3 LDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIG-DNSITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATS 539
            +DPRSGFCK++S FYSKRKPI LP + ++DVTTFISSQ+H G +A IDA+T R +TF ++W AV+SVA++L ++G+RKG VILLLSPNSI+FPIVCLSVMSLGAIITTTNPLNTT EIAKQIADS P LAFT P+L+ KLADS L IVLIG D +  NSKI+   E MM+ +  ++RVK+RVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTI  RF LE G Q FICTVPMFHIYGLAAFATGLLASGSTVVVLS+FEM EMLSAI KY+ATYLPLVPPIL+A+VN ADQI ++YDL +LQSVLSGGAPLS+EVIEGF +++P+V ILQGYGLTESTGIGASTDSL+ESRRYGTAG+LSPSMEAKIV+P+TGE L VNRTGELWL+GPT+MKGYFSN EATA+TLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHP+IADAAVIPFPD EVGQFPMAYVVRK GSD+S + VM+FVAKQVAPYK+IRRVAFV S+PKNPSGKILRKDLIKLATS
Sbjct:    9 IDPRSGFCKSDSIFYSKRKPIPLPPNDSLDVTTFISSQAHPGKIAFIDASTARHLTFAEVWMAVDSVASSLFSMGIRKGHVILLLSPNSIFFPIVCLSVMSLGAIITTTNPLNTTREIAKQIADSNPVLAFTTPQLIPKLADSNLQIVLIGGDQNPPNSKIVTTLEDMMKKQPSESRVKERVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTILSRFNLEAGYQTFICTVPMFHIYGLAAFATGLLASGSTVVVLSRFEMDEMLSAIGKYRATYLPLVPPILIAMVNGADQIRRKYDLGTLQSVLSGGAPLSREVIEGFAERYPTVGILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSMEAKIVDPDTGEALQVNRTGELWLRGPTVMKGYFSNVEATASTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPDIADAAVIPFPDREVGQFPMAYVVRKGGSDLSENDVMDFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATS 546
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AE41 ((4-coumarate--CoA ligase-like 5 {ECO:0000313|RefSeq:XP_021285105.1}))

HSP 1 Score: 900.197 bits (2325), Expect = 0.000e+0
Identity = 427/543 (78.64%), Postives = 490/543 (90.24%), Query Frame = 0
 
Query:    2 ALDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDNSITNS---KIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQGAQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            A+DPRSGFC++NSTFYSKRKPI+L  + ++DVTTFISS++HHG VA IDA TGR++TF +LW AV+SVAT LS++G+RKG V+LLLSPNSIYFP+VCLSVMSLGAIITTTNPLNT AEI KQIADSKP L FT+P+LL KLA S +PIVL+ D++I+N+   KI+     MM+TE   +RV+DRV QDDTATLLYSSGTTGASKGVVSSHRNLI MVQT+  RF L++  + FICTVPMFHIYGL AFATGLLASGSTV+VLSKFEMH+MLS IEKY+ATYLPLVPPILVA+VN ADQI K+YDLSSL S LSGGAPLSKEV EGF+ K+P+V ILQGYGLTESTGIGASTDSL+ESR+YGTAGMLSPSMEAKIV+P++G+ L VNRTGELWL+GP+IMKGYFSN EATA+TLDSEGWL+TGD+CYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEI DAAVIPFPD+EVGQFPMAYVVRK G ++S +AVM+FVA+QVAPYK+IR+VAFVA++PKNPSGKILRKDLIKLATSKL
Sbjct:    8 AIDPRSGFCRSNSTFYSKRKPISLAKNDSLDVTTFISSRAHHGKVAFIDAGTGRQLTFSELWRAVDSVATCLSDMGIRKGHVVLLLSPNSIYFPVVCLSVMSLGAIITTTNPLNTAAEIGKQIADSKPVLGFTIPQLLPKLAGSTIPIVLLDDHAISNAGQAKIVTTLHQMMKTEPSGSRVRDRVNQDDTATLLYSSGTTGASKGVVSSHRNLIAMVQTVLNRFSLQE-EERFICTVPMFHIYGLVAFATGLLASGSTVIVLSKFEMHDMLSTIEKYRATYLPLVPPILVAMVNAADQIRKKYDLSSLHSALSGGAPLSKEVTEGFLDKYPTVKILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALTVNRTGELWLRGPSIMKGYFSNPEATASTLDSEGWLKTGDICYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEILDAAVIPFPDKEVGQFPMAYVVRKAGCNLSETAVMDFVARQVAPYKRIRKVAFVAAIPKNPSGKILRKDLIKLATSKL 549
[Close]
BLAST of DCAR_009523 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EY19 ((4-coumarate-CoA ligase {ECO:0000313|EMBL:PON90428.1}))

HSP 1 Score: 899.427 bits (2323), Expect = 0.000e+0
Identity = 430/545 (78.90%), Postives = 490/545 (89.91%), Query Frame = 0
 
Query:    3 LDPRSGFCKANSTFYSKRKPIALPCHQAIDVTTFISSQSHHGHVALIDAATGREITFPQLWAAVESVATALSNLGVRKGDVILLLSPNSIYFPIVCLSVMSLGAIITTTNPLNTTAEIAKQIADSKPKLAFTVPELLSKLADSKLPIVLIGDN----SITNSKIIANFESMMRTEARQNRVKDRVTQDDTATLLYSSGTTGASKGVVSSHRNLIGMVQTITGRFQLEQG--AQAFICTVPMFHIYGLAAFATGLLASGSTVVVLSKFEMHEMLSAIEKYKATYLPLVPPILVALVNNADQITKRYDLSSLQSVLSGGAPLSKEVIEGFVQKFPSVAILQGYGLTESTGIGASTDSLDESRRYGTAGMLSPSMEAKIVNPETGEPLGVNRTGELWLKGPTIMKGYFSNAEATANTLDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDEEVGQFPMAYVVRKTGSDISGSAVMNFVAKQVAPYKKIRRVAFVASVPKNPSGKILRKDLIKLATSKL 541
            +D RSGFCKANSTFYSKRKP+ LP + ++DVTTFISS++HHG +A IDAATGR +TFPQLW AV+SVAT LS++G+RKGDVILLLSPNSI+FP+VCL+VMSLGA+ITTTNPLNT  EIAKQIADSKP LAFT+P L+ K+ADS LPIVLI D+    S  N KI+++   MMR + R NRV  RV+QDDTATLLYSSGTTGASKGV+SSHRNLI MVQTI GRF  E G   Q FICTVPMFHIYGLAAFA GLL+SGST+V+LSKFE+HEMLSAIE+Y+ATYLPLVPPILVAL+N ADQI  +YDLSSL SVLSGGAPLSKEVIEGFV+K+P+V+ILQGYGLTESTGIGASTD L+ESRRYGTAGMLSPSMEA+IVNPETGE L V++TGELWL+GPTIMKGYFSN EAT++TLDSEGWLRTGDLCYID+DGFIFVVDRLKELIKYKGYQVPPAELEALLL+HPEI+DAAVIP+PD+E GQ+PMAYVVRK GS +S +AVM+F+ + VAPYK+IR+VAFVAS+PKNPSGKILRKDLIKLATSKL
Sbjct:    9 VDKRSGFCKANSTFYSKRKPVPLPQNHSVDVTTFISSRAHHGRIAFIDAATGRHLTFPQLWRAVDSVATCLSDMGIRKGDVILLLSPNSIFFPVVCLAVMSLGAVITTTNPLNTPREIAKQIADSKPVLAFTIPLLVPKIADSNLPIVLIDDDHQADSPKNPKIVSSLGEMMRKDPRPNRVGHRVSQDDTATLLYSSGTTGASKGVISSHRNLIAMVQTILGRFGSENGDQEQTFICTVPMFHIYGLAAFAMGLLSSGSTIVILSKFELHEMLSAIERYRATYLPLVPPILVALLNGADQIRAKYDLSSLHSVLSGGAPLSKEVIEGFVEKYPTVSILQGYGLTESTGIGASTDCLEESRRYGTAGMLSPSMEARIVNPETGEALPVSQTGELWLRGPTIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLSHPEISDAAVIPYPDKEAGQYPMAYVVRKAGSKLSETAVMDFIGQLVAPYKRIRKVAFVASIPKNPSGKILRKDLIKLATSKL 553
Match NameStatsDescription
A0A2R6PZD6E-Value: 0.000e+0, PID: 80.964-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A7J0GIE5E-Value: 0.000e+0, PID: 80.784-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A5B7BTN1E-Value: 0.000e+0, PID: 80.264-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A5J5AGD8E-Value: 0.000e+0, PID: 80.004-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6P6B5X7E-Value: 0.000e+0, PID: 78.86(4-coumarate--CoA ligase-like 5 {ECO:0000313|RefSe... [more]
A0A4S4D631E-Value: 0.000e+0, PID: 80.304-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A061FEU1E-Value: 0.000e+0, PID: 78.82(OPC-8:0 CoA ligase1 isoform 1 {ECO:0000313|EMBL:E... [more]
A0A7J7HSW5E-Value: 0.000e+0, PID: 80.484-coumarate--CoA ligase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6J1AE41E-Value: 0.000e+0, PID: 78.64(4-coumarate--CoA ligase-like 5 {ECO:0000313|RefSe... [more]
A0A2P5EY19E-Value: 0.000e+0, PID: 78.90(4-coumarate-CoA ligase {ECO:0000313|EMBL:PON90428... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.