Resource Type:
Polypeptide
Name:
DCAR_011680
Identifier:
DCAR_011680.mRNA-protein
Sequence:
MSFRRFKAYLVGGCVRDLLLNRQPKDYDIITNAQLEQVKEQFRRTQIVGR
QFPICIVHLKNTVIEVSSFETKVRGTIEDKKKKFLIVQRPIKCKKPDLLL
WRDCMRRDFTVNSLFFNPFENKIYDYANGLRDLRSLKLQTLVPAHTSFTE
DSARILRAVRIAARLCLSFSEEIETAVSDLSFSVRRISQAAYLTQQESKY
GENSTMLMKLLHNLDRVSSCEQPSDSGLWVGLFAFHIALVGNPQHPLVVL
CLASLLYYGNWKEAIHHARLQIDAPNCFEPEFLEATAFLSDHELAERVDQ
LAFLIHQSVHVLTDADSLHEMMENFPGCTSSGLVFVPKNMRSYIENVFGG
IDGLVHNSKGRMSFDIDYELLQKRDVKESRFVIGKIVMETLCCAGDHEVT
SQRDNDPIEKKIVEKQETSSSCQSLTARNMMSNEDVFTGVKQELQQKKEE
KQQKTKKQKVVKIEDNTYVKSKVIGEGRHLLSESQVAEMQKAVENCEEIT
HSKCNFREADVAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSY
LLAMVSLTESVSMQSYGAAENGTVFAFADCRRDLSKNDCILCVEHCKVKL
HSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEISDDEVFCAGNEFAGN
KSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKT
DCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILGYSEIHNEKVKRQCH
SVIHMIEVACSVVEKEQYDYLASVTDSKLIFSYEMLEKATKYFHDSNKLG
EGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHV
KLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTA
EGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHL
SSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSEST
IPLLEMVWNSYQKGKLCEEIDPVVKASFQEDAERVLKIGLLCAQASAELR
PSMSKVVKMLMNNQQLPQPTQPPFISSRYVEKIPLKI*
Sequence Length:
1088
Sequence Checksum:
df72ab18425987b0520f8d26200631f7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_011680, derives from mRNA, DCAR_011680. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R131 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8023497.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 329/583 (56.43%), Postives = 409/583 (70.15%), Query Frame = 0
Match: A0A5N6R131 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8023497.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 329/583 (56.43%), Postives = 409/583 (70.15%), Query Frame = 0
Query: 532 CSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENG----TVFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEISD--DEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYV---SHILGYSEIHN-EKVKRQCH---------SVIHMIEVACSVV------------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASFQ-EDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
CS T L P +RQ F+ +L AM +LT + Q Y A NG TV+AF +C +DL++ DC LC CK ++ CL FQ GGR++ +DGC+LRYD Y F E D C F GN ++ +V LVRNL ++ KN+GFSVG+ NKG+ VYGL QCW F N+T CE+CL VAK+GSC PK EG L +GCY+ + Y+ E+ R H S + ++ V +VV E++Q LA+V SKL SYE+LE+AT YFH+SNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGINHKN VKLLG S+TGPESLLVYEY+PNQSLHDYF K N + L W+VRYNI+LGTAEGL YLHE+SN RIIHRDIKLSNILLDK+F PKIADFGLARLFP DKTH+S+ IAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N AFS+ + +L+ VW+ + G+LCE IDP ++ FQ E+A R+L+IGLLC QASAELRPSMS VVKM+ +N ++ QPTQPPF++S E
Sbjct: 34 CSNTTAL-PQDRQTFVGYFLAAMDTLTPLIDTQRYAAVVNGSGNNTVYAFGECMKDLTRTDCNLCFAQCKTQVLRCLPFQRGTRGGRLF--YDGCYLRYDDYYFLNETLSLQDMSVCGNQTFVGNDTVFSANVNHLVRNLSLEAPKNDGFSVGSVNKGNVTVYGLAQCWEFANRTGCEECLANAVAKIGSCAPKGEGRALLAGCYMRYSTQKFYYNSTEPVEESNRGRHLAITLAATSSAVAVVLVIATVVFIVRKNLRKKRRERKQLGALLATVNKSKLNISYEILERATNYFHNSNKLGQGGSGSVYKGVLPDGQVVAIKRLFFNTRQWVDHFFNEVNLISGINHKNLVKLLGCSITGPESLLVYEYVPNQSLHDYFSAKTNCQLLTWEVRYNIILGTAEGLTYLHEESNTRIIHRDIKLSNILLDKDFMPKIADFGLARLFPEDKTHISTGIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNAFSQDSHSILQRVWSLHGTGRLCEAIDPALEGKFQEEEASRLLQIGLLCVQASAELRPSMSLVVKMITDNHEIAQPTQPPFLNSSSAE 613
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5U390 ((cysteine-rich receptor-like protein kinase 3 {ECO:0000313|RefSeq:XP_021833787.1}))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 320/603 (53.07%), Postives = 418/603 (69.32%), Query Frame = 0
Match: A0A6P5U390 ((cysteine-rich receptor-like protein kinase 3 {ECO:0000313|RefSeq:XP_021833787.1}))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 320/603 (53.07%), Postives = 418/603 (69.32%), Query Frame = 0
Query: 511 VAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILGYSEIHNEKVK----RQCHSVIHMIEVACSVV--------------------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASF-QEDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
V H+ R A +L C+ +T L ++RQ F+ ++L M ++T +++Q Y A NGT V+AF +C +DLSK DC +C CK ++ CL FQ GGR++ +DGC+LRYD + FF + + D C G F GN+S+ +++ LVRNL KN+GFSVG +G+ VYGL QCW F+N + CE+CL V ++GSC PK EG VLN+GCY+ + +N R+ ++I + A V EK+Q LA+V S+L FSYE+LE+AT YFHDSNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGI+HKN VKLLG S+TGPESLLVYEY+PNQSLHDYF K NVE L+W++RY I+LGTAEGL YLHE+S +RIIHRDIKLSNILLD++F PKI DFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N + +++ +L M W+ Y G+LC +DP+++ F +E+A R+L+IGLLC QASAELRP+MS VVKML+ N ++PQPTQPPF++S E
Sbjct: 17 VKTAHSDPRATEA-----ALMCTNETAL-MADRQTFVANFLATMDAVTPQIAVQRYAAVVNGTGNNTVYAFGECMKDLSKQDCDVCFAQCKTQILRCLPFQKATRGGRLF--YDGCYLRYDDFNFFNQSLSAQDTSVCGGTGFGGNQSVFKDNALRLVRNLSFVAPKNDGFSVGFVGQGNETVYGLAQCWEFVNGSACEECLADTVVRIGSCPPKAEGRVLNAGCYLRYSTQKFYSNNTSTAGNGGRRGLAIILAVTSAVFAVVLSIFSVAFFTRKKILKRRKEKKQLGPLLATVNKSQLNFSYEVLERATNYFHDSNKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDYFTVKNNVEPLRWELRYKIILGTAEGLAYLHEESKVRIIHRDIKLSNILLDEDFMPKIGDFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNCYIPNSVSILHMAWDLYGTGRLCSAVDPLLEGKFEEEEASRLLQIGLLCVQASAELRPAMSLVVKMLIENPEIPQPTQPPFLNSGSAE 611
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HUH2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN21113.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN21113.1}))
HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 324/596 (54.36%), Postives = 416/596 (69.80%), Query Frame = 0
Match: A0A2G9HUH2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN21113.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN21113.1}))
HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 324/596 (54.36%), Postives = 416/596 (69.80%), Query Frame = 0
Query: 515 HNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHIL----------------GYSEIHNEKVKRQCHSVIHMIEVACSVV-----------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASFQ-EDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFI 1075
H K+ + +L C +T +PS+RQ F+ ++L AM +++ +VS Q YG NGT V+AF +C +DLS+NDC LC CK + CL FQ + GGR++ +DGC+LRYD Y FF E S D C ++F GN+SL RESV ELVRN+ +G KN+GF G NKG+ VYGL QCW LN++DC KCLE V+++GSC PK EG VLN+GCY+ + G S + C ++ ++ +A + EK+Q LA VT SK FSYE LE+AT YFH+SNKLG+GGSG +YKG LP G+TVA+KR+ F+T QWA+H FNEVNLIS INHKN VKLLG S+TGPESLLVYEY+PNQSLH+Y F +K+V L W+ RY I+LGTAEGL +LHE SNLRIIHRDIKLSN+LL+++FTPKIADFGLAR+FP DKTH+S+A+AGTLGYMAPEY+ G+LTEK DVYSFGV+VIEVV G++ AFS+++ +L+ VWN GKL E +DP + F E A R+LKIGL+CAQA+AELRPSMS VVKML+ +Q++P+P QPPF+
Sbjct: 15 HIKQSFCDPRATEAALVCGNRTA-EPSDRQVFVANFLAAMDAISPAVSRQRYGVITNGTGNNTVYAFGECIKDLSQNDCNLCFAQCKTSILRCLPFQRLTKGGRLF--YDGCYLRYDDYMFFNESLSSVDRTVCGSDDFVGNRSLFRESVLELVRNVSDEGPKNDGFFTGFVNKGNLTVYGLGQCWEVLNRSDCVKCLENGVSRIGSCPPKVEGRVLNAGCYLRYSTTRFYNNSASDAPSGSGGGSHRRATILASTCGAIACLLFIAAISLFARKKIVKKRREKKQLGALLAIVTRSKTNFSYETLEEATNYFHNSNKLGQGGSGSVYKGILPSGQTVAVKRLFFNTTQWADHFFNEVNLISDINHKNLVKLLGCSITGPESLLVYEYVPNQSLHEYLFVRKDVPRLGWEERYKIILGTAEGLDFLHEKSNLRIIHRDIKLSNVLLEEDFTPKIADFGLARMFPEDKTHISTAVAGTLGYMAPEYLVRGKLTEKVDVYSFGVLVIEVVTGKRVNAFSQNSHSILQKVWNLNCSGKLIEAVDPSINGKFPVEGAIRMLKIGLICAQATAELRPSMSTVVKMLIGDQEIPRPKQPPFL 607
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DVN6 ((Uncharacterized protein {ECO:0000313|EMBL:THG07084.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 330/604 (54.64%), Postives = 416/604 (68.87%), Query Frame = 0
Match: A0A4S4DVN6 ((Uncharacterized protein {ECO:0000313|EMBL:THG07084.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 330/604 (54.64%), Postives = 416/604 (68.87%), Query Frame = 0
Query: 518 KRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGTV----FAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEISD--DEVFCA-GNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLP-KTEGSVLNSGCYVSH----ILGYSEIHNEKVKRQCHSVIHMIEVACSVV-----------------------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASFQE-DAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVEKIP 1084
K+ L A S T S RQ F++++L AM SLT ++ QSYGA GTV +AF +C +DLS+ DC LC K ++ CL FQ + GGR++ FDGC+LRYD Y FF E D C G++F GN+SLLRE+V ELV+NL V+G KN GF VG+ N+G VYGLVQCW F+N +DCE CLE V+ + SCLP K EG VLN+GCY+ + S+ + S + +I A S E++Q LA V S L FSYE LE+AT YFH SNKLG+GGSG +YKG LPDG+ VA+KR+ F+T+QW +H FNEVNLISGI+HKN VKLLG S+TGPESLLVYE++PNQSL+D+FF +K+V L+W++RY I+LGTAEGL YLHE+S LRI+HRDIKLSN+LLD +FTPKIADFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKAD+YSFGV+VIEVV G++N FSE++ +L+MVWN Y GKL E IDP ++ FQE +A R+L+IGL+C QA+AELRPSMS VVKM+ N ++P QPPF++S E P
Sbjct: 17 KQTLSDPRATQSALICTNTTAQSSARQAFVSNFLSAMDSLTPLITSQSYGAVIKGTVNTTVYAFGECLKDLSQTDCNLCFAQIKTQILKCLPFQRLIRGGRLF--FDGCYLRYDDYMFFNESLSGFDRTVCGNGDDFGGNQSLLRENVVELVKNLSVEGVKNGGFFVGSVNRGKLSVYGLVQCWEFVNGSDCESCLEKGVSGIVSCLPNKEEGRVLNAGCYLRYSTRKFYNNSDTDASQGNGGGRSHLAIILAATSAAVALLLTVAMISFITRKKIVKKRRERKQLGALLAIVNKSALNFSYETLERATNYFHHSNKLGQGGSGSVYKGILPDGQVVAVKRLFFNTRQWMDHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEFVPNQSLNDHFFVRKDVHRLRWELRYKIVLGTAEGLAYLHEESELRIVHRDIKLSNVLLDDDFTPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVTRGKLTEKADIYSFGVLVIEVVTGKRNNTFSENSYSILQMVWNLYGTGKLSEAIDPSLEGKFQEHEASRLLEIGLVCVQAAAELRPSMSMVVKMIKNENEIPLAMQPPFMNSVSTEISP 618
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5TL89 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4264332.1}))
HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 320/605 (52.89%), Postives = 415/605 (68.60%), Query Frame = 0
Match: A0A6J5TL89 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4264332.1}))
HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 320/605 (52.89%), Postives = 415/605 (68.60%), Query Frame = 0
Query: 511 VAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGA----AENGTVFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILG--YSE-IHNEKVKRQCHSVIHMIEVACSVV-----------------------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASF-QEDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
V H+ R A +L C+ +T L +ERQ F+ ++L M ++T +++Q Y A EN TV+AF +C +DLSK DC +C CK ++ CL FQ GGR++ +DGC+LRYD + FF + + D C F GN+S+ +++ LVRNL KN+GFSVG +G+ VYGL QCW F+N + CE+CL V ++GSC PK EG VLN+GCY+ + YS + H + +I S V EK+Q LA+V S+L F YE LE+AT YFHDSNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGI+HKN VKLLG S+TGPESLLVYEY+PNQSLHDYF K NV+ L+W++RY I+LGTAEGL YLHE+S +RIIHRDIKLSNILLD++F PKIADFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N + +++ +L M W+ Y G+LC +DP+++ F +E+A R+L+IGLLC QASAELRP+MS VVKML+ N ++PQPTQPPF++S E
Sbjct: 17 VKTAHSDPRATEA-----ALMCTNETAL-MAERQTFIANFLATMDAVTPQIAVQRYAAVVNGTENNTVYAFGECMKDLSKQDCDVCFAQCKTQILRCLPFQKATRGGRLF--YDGCYLRYDDFNFFNQSLSAQDTSVCGATGFGGNQSVFKDNALRLVRNLSFVAPKNDGFSVGFVGQGNETVYGLAQCWEFVNGSACEECLADTVVRIGSCPPKAEGRVLNAGCYLRYSTQKFYSNNTSTDAAGNGGHRGLSIILAVTSAVFAVVLSIFSVAFFTRKKILKRRKEKKQLGPLLATVNKSQLNFLYEDLERATNYFHDSNKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDYFTVKNNVDPLRWELRYKIILGTAEGLAYLHEESKVRIIHRDIKLSNILLDEDFMPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNCYIPNSVSILHMAWDLYGTGRLCSAVDPLLEGKFDEEEASRLLQIGLLCVQASAELRPAMSLVVKMLIENPEIPQPTQPPFLNSGSAE 613
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XAS4 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ23202.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 318/581 (54.73%), Postives = 412/581 (70.91%), Query Frame = 0
Match: M5XAS4 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ23202.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 318/581 (54.73%), Postives = 412/581 (70.91%), Query Frame = 0
Query: 511 VAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILGYSEIHNEKVKRQCHSVIHMI--EVACSVVEKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASF-QEDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
V H+ R A +L C+ +T L +ERQ F+ ++L M ++T +++Q Y AA NGT V+AF +C +DLSK DC +C CK ++ CL FQ GGR++ +DGC+LRYD + FF + + D C G F GN+S+ +++ LVRNL KN+GFSVG +G+ VYGL QCW F+N + CE+CL V ++GSC PK EG VLN+G I+ V SV ++ EK+Q LA+V S+L FSYE+LE+AT YFHDSNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGI+HK VKLLG S+TGPESLLVYEY+PNQSL+DYF K NVE L+W++RY I+LGTAEGL YLHE+S +RIIHRDIKLSNILLD++F PKIADFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N + +++ +L M W+ Y G+LC +DP+++ F +E+A R+L+IGLLC QASAELRP+MS VVKML+ N ++PQPTQPPF++S E
Sbjct: 17 VKTAHSDPRATEA-----ALMCTNETAL-MAERQTFVANFLATMDAVTPQIAVQRYAAAVNGTGNNTVYAFGECMKDLSKQDCDVCFAQCKTQILRCLPFQKATRGGRLF--YDGCYLRYDDFNFFNQSLSAQDTSVCGGTGFGGNQSVFKDNALRLVRNLSFVAPKNDGFSVGFVGQGNETVYGLAQCWEFVNGSACEECLADTVVRIGSCPPKAEGRVLNAGHRGLAIILAVTAAVFAVVLSIFSVAFFTRKKILKRRKEKKQLGPLLATVNKSQLNFSYEVLERATNYFHDSNKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISGIHHKKLVKLLGCSITGPESLLVYEYVPNQSLNDYFTVKNNVEPLRWELRYKIILGTAEGLAYLHEESKVRIIHRDIKLSNILLDEDFMPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNCYIPNSVSILHMAWDLYGTGRLCSAVDPLLEGKFDEEEASRLLQIGLLCVQASAELRPAMSLVVKMLIENPEIPQPTQPPFLNSGSAE 589
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251R2W0 ((Uncharacterized protein {ECO:0000313|EMBL:ONI30402.1}))
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 320/605 (52.89%), Postives = 418/605 (69.09%), Query Frame = 0
Match: A0A251R2W0 ((Uncharacterized protein {ECO:0000313|EMBL:ONI30402.1}))
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 320/605 (52.89%), Postives = 418/605 (69.09%), Query Frame = 0
Query: 511 VAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILG--YSE-IHNEKVKRQCHSVIHMI-----------------------EVACSVVEKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASF-QEDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
V H+ R A +L C+ +T L +ERQ F+ ++L M ++T +++Q Y AA NGT V+AF +C +DLSK DC +C CK ++ CL FQ GGR++ +DGC+LRYD + FF + + D C G F GN+S+ +++ LVRNL KN+GFSVG +G+ VYGL QCW F+N + CE+CL V ++GSC PK EG VLN+GCY+ + YS + H + +I ++ EK+Q LA+V S+L FSYE+LE+AT YFHDSNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGI+HK VKLLG S+TGPESLLVYEY+PNQSL+DYF K NVE L+W++RY I+LGTAEGL YLHE+S +RIIHRDIKLSNILLD++F PKIADFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N + +++ +L M W+ Y G+LC +DP+++ F +E+A R+L+IGLLC QASAELRP+MS VVKML+ N ++PQPTQPPF++S E
Sbjct: 17 VKTAHSDPRATEA-----ALMCTNETAL-MAERQTFVANFLATMDAVTPQIAVQRYAAAVNGTGNNTVYAFGECMKDLSKQDCDVCFAQCKTQILRCLPFQKATRGGRLF--YDGCYLRYDDFNFFNQSLSAQDTSVCGGTGFGGNQSVFKDNALRLVRNLSFVAPKNDGFSVGFVGQGNETVYGLAQCWEFVNGSACEECLADTVVRIGSCPPKAEGRVLNAGCYLRYSTQKFYSNNTSTDAAGNGGHRGLAIILAVTAAVFAVVLSIFSVAFFTRKKILKRRKEKKQLGPLLATVNKSQLNFSYEVLERATNYFHDSNKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISGIHHKKLVKLLGCSITGPESLLVYEYVPNQSLNDYFTVKNNVEPLRWELRYKIILGTAEGLAYLHEESKVRIIHRDIKLSNILLDEDFMPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNCYIPNSVSILHMAWDLYGTGRLCSAVDPLLEGKFDEEEASRLLQIGLLCVQASAELRPAMSLVVKMLIENPEIPQPTQPPFLNSGSAE 613
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RKP8 ((Cysteine-rich receptor-like protein kinase 3 {ECO:0000313|EMBL:EXB82555.1}))
HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 311/585 (53.16%), Postives = 408/585 (69.74%), Query Frame = 0
Match: W9RKP8 ((Cysteine-rich receptor-like protein kinase 3 {ECO:0000313|EMBL:EXB82555.1}))
HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 311/585 (53.16%), Postives = 408/585 (69.74%), Query Frame = 0
Query: 529 SLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGTVFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEIS--DDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSH-ILGYSEIHNEKVKRQCHSVIHMIEVACSVV---------------------------EKEQYDYLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFG-KKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASFQ-EDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
+L C+ T S+R F+ +YL AM ++T VS + + A NGTV+AF +C +DLS+ DC LC CK ++ C FQ L GR++ +DGC+LRYD + FF + S +D C +FAGN + R++V ELVRNL V+ + +GF VG+ +G+ V+GL QCW F+ + CE CL G V K+GSC+PK EG +LN+GCY+ + + + Q +S + + +V EK L +V SKL +SYE+LEKAT YFHDSNKLG+GGSG +YKG LPDG+TVAIKR+ F+T+QW +H F EVNLISGI HKN V+LLG S+TGPESLLVYEY+PNQSL D FG KKN L W++RY I+LGTAEGL YLHE+SNLRIIHRDIKLSNILLD+++ PKIADFGLARLFP DKTH+S+AIAGTLGYMAPEY+ G+L+EKAD+YSFGV+VIE++CGR+N +F++++ +L+MVWN Y GKL + +DP ++ +F E+A R+L+IGL+C QASAELRPSMS VVKML + ++PQPTQPPFI+S E
Sbjct: 30 ALICANTTASTSSQRATFIANYLAAMDAVTPLVSRKRFAAVVNGTVYAFGECMKDLSQRDCNLCFAQCKSQILRCFPFQKATLAGRLF--YDGCYLRYDDHDFFNQSSSIEDRTVCGPTDFAGNSRVFRDNVAELVRNLSVEAPRRDGFFVGSVTRGNVSVHGLAQCWEFVTGSACEYCLAGSVKKLGSCVPKEEGRLLNAGCYLRYSTKKFYDNSTSDDSGQGNSGNRPLAIILAVTSAGFALLLTLAAVAFFLRKGLLKKRREEKRLGALLDTVNKSKLNYSYEVLEKATNYFHDSNKLGQGGSGSVYKGVLPDGKTVAIKRLFFNTRQWVDHFFTEVNLISGICHKNLVELLGCSITGPESLLVYEYVPNQSLLDNLFGGKKNAPQLSWELRYKIILGTAEGLAYLHEESNLRIIHRDIKLSNILLDEDYAPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYIVRGKLSEKADIYSFGVLVIEIICGRKNNSFTQTSYSVLQMVWNLYGTGKLSDAVDPGLEGNFNSEEASRLLQIGLVCVQASAELRPSMSSVVKMLTESHEIPQPTQPPFINSASTE 612
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EC56 ((Full=PREDICTED: cysteine-rich {ECO:0000313|EMBL:VVA13373.1}))
HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 319/605 (52.73%), Postives = 416/605 (68.76%), Query Frame = 0
Match: A0A5E4EC56 ((Full=PREDICTED: cysteine-rich {ECO:0000313|EMBL:VVA13373.1}))
HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 319/605 (52.73%), Postives = 416/605 (68.76%), Query Frame = 0
Query: 511 VAAKHNKKRKLHANHADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHILG--YSE-IHNEKVKRQCHSVIHMI-----------------------EVACSVVEKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASF-QEDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
V H+ R A +L C+ +T L +ERQ F+ ++L M ++T +++Q Y AA NGT V+AF +C +DLSK DC +C CK ++ CL FQ GGR++ +DGC+LRYD + FF + + D C F GN+S+ +++ LVRNL KN+GFSVG +G+ VYGL QCW F+N + CE+CL V ++GSC PK EG VLN+GCY+ + YS + H + +I ++ EK+Q LA+V S+L FSYE+LE+AT YFHDSNKLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLISGI+HK VKLLG S+TGPESLLVYEY+PNQSL+DYF K NVE L+W++RY I+LGTAEGL YLHE+S +RIIHRDIKLSNILLD++F PKIADFGLARLFP DKTH+S+AIAGTLGYMAPEYV G+LTEKADVYSFGV+VIEVVCG++N + +++ +L M W+ Y G+LC +DP+++ F +E+A R+L+IGLLC QASAELRP+MS VVKML N ++PQPTQPPF++S E
Sbjct: 17 VKTAHSDPRATEA-----ALMCTNETAL-MAERQTFVANFLATMDAVTPQIAVQRYAAAVNGTGNNTVYAFGECMKDLSKQDCDVCFAQCKTQILRCLPFQKATRGGRLF--YDGCYLRYDDFNFFNQSLSAQDTSVCGRTGFGGNQSVFKDNALRLVRNLSFVAPKNDGFSVGFVGQGNETVYGLAQCWEFVNGSACEECLADTVVRIGSCPPKAEGRVLNAGCYLRYSTQKFYSNNTSTDAAGNGGHRGLAIILAVTAAVFAVVLSIFSVAFFTRKKILKRRKEKKQLGPLLATVNKSQLNFSYEVLERATNYFHDSNKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISGIHHKKLVKLLGCSITGPESLLVYEYVPNQSLNDYFTVKNNVEPLRWELRYKIILGTAEGLAYLHEESKVRIIHRDIKLSNILLDEDFMPKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEVVCGKRNNCYIPNSVSILHMAWDLYGTGRLCSAVDPLLEGKFDEEEASRLLQIGLLCVQASAELRPAMSLVVKMLTENPEIPQPTQPPFLNSGSAE 613
BLAST of DCAR_011680 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LA30 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p058790:mrna}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 316/589 (53.65%), Postives = 407/589 (69.10%), Query Frame = 0
Match: A0A7N2LA30 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p058790:mrna}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 316/589 (53.65%), Postives = 407/589 (69.10%), Query Frame = 0
Query: 526 ADTSLACSKKTVLDPSERQGFMTSYLLAMVSLTESVSMQSYGAAENGT----VFAFADCRRDLSKNDCILCVEHCKVKLHSCLFFQSVFLGGRVYNNFDGCFLRYDGYRFFGEI--SDDEVFCAGNEFAGNKSLLRESVGELVRNLGVKGAKNEGFSVGNYNKGDFQVYGLVQCWRFLNKTDCEKCLEGLVAKVGSCLPKTEGSVLNSGCYVSHI---LGYSEIHNEKVKRQ----------CHSVIHMIEVACSVV------------EKEQYD-YLASVTDSKLIFSYEMLEKATKYFHDSNKLGEGGSGHIYKGRLPDGRTVAIKRILFDTKQWAEHLFNEVNLISGINHKNHVKLLGYSVTGPESLLVYEYMPNQSLHDYFFGKKNVEALKWDVRYNILLGTAEGLMYLHEDSNLRIIHRDIKLSNILLDKEFTPKIADFGLARLFPHDKTHLSSAIAGTLGYMAPEYVFSGRLTEKADVYSFGVVVIEVVCGRQNYAFSESTIPLLEMVWNSYQKGKLCEEIDPVVKASFQ-EDAERVLKIGLLCAQASAELRPSMSKVVKMLMNNQQLPQPTQPPFISSRYVE 1081
+ +L C+ KT P +RQ +++++L AM ++T ++ Q Y A NGT V+AF +C +DL+KNDC LC CK ++ CL FQ GGR++ +DGC+LRYD Y FF E D+ C EF GN S+ +V +LV NL V+ K +GFSVG K + VYGL QCW F+N +DCE CL V+ + SC PK EG VLN+GCY+ + Y+ + Q S + ++ V +VV E+EQ LA+V +SKL +SYE+LEKAT YFH S KLG+GGSG +YKG LPDG+ VAIKR+ F+T+QW +H FNEVNLIS I+HKN VKLLG S+ GPESLLVYEY+PNQSLHDYF K+ ++ LKW+VRY I+LGTAEGL YLHE+ RIIHRDIKLSNILL+++FT KIADFGLARLFP DKTH+S+ IAGTLGY+APEYV G LTEKADVYSFG +VIEVV G++N F + + +++MVWN Y G++CE +DP ++ FQ E+A R+L+IGLLC QASAELRPSMS VVKML +NQ++PQPT PPF++S E
Sbjct: 26 TEAALICTNKTSPMP-QRQTYISNFLAAMTTVTPLIATQRYAAVVNGTGNTTVYAFGECMKDLTKNDCDLCFARCKTQILRCLPFQRAIRGGRLF--YDGCYLRYDDYYFFNEALSVQDKTVCGAQEFVGNGSVFSANVNQLVMNLSVEAPKFDGFSVGFVTKENVTVYGLAQCWEFVNGSDCEYCLANAVSNISSCTPKEEGRVLNTGCYLRYSTEKFYYNSTEPVRNSNQGSKLAITLAATSSALALLLVIATVVFIVRKNVLKRRGEREQLGPLLATVNNSKLNYSYEVLEKATNYFHHSKKLGQGGSGSVYKGVLPDGKVVAIKRLFFNTRQWVDHFFNEVNLISDIHHKNLVKLLGCSIAGPESLLVYEYVPNQSLHDYFSAKRKLQLLKWEVRYKIILGTAEGLAYLHEELETRIIHRDIKLSNILLEEDFTAKIADFGLARLFPEDKTHISTGIAGTLGYIAPEYVIRGILTEKADVYSFGALVIEVVSGKRNNTFFQYSHSIIQMVWNLYGIGRVCEAVDPALEGQFQEEEASRLLQIGLLCVQASAELRPSMSTVVKMLSDNQEIPQPTHPPFLNSSSAE 611
| Match Name | Stats | Description |
|---|---|---|
| A0A5N6R131 | E-Value: 0.000e+0, PID: 56.43 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8023... [more] |
| A0A6P5U390 | E-Value: 0.000e+0, PID: 53.07 | (cysteine-rich receptor-like protein kinase 3 {ECO... [more] |
| A0A2G9HUH2 | E-Value: 0.000e+0, PID: 54.36 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A4S4DVN6 | E-Value: 0.000e+0, PID: 54.64 | (Uncharacterized protein {ECO:0000313|EMBL:THG0708... [more] |
| A0A6J5TL89 | E-Value: 0.000e+0, PID: 52.89 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4264... [more] |
| M5XAS4 | E-Value: 0.000e+0, PID: 54.73 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ2320... [more] |
| A0A251R2W0 | E-Value: 0.000e+0, PID: 52.89 | (Uncharacterized protein {ECO:0000313|EMBL:ONI3040... [more] |
| W9RKP8 | E-Value: 0.000e+0, PID: 53.16 | (Cysteine-rich receptor-like protein kinase 3 {ECO... [more] |
| A0A5E4EC56 | E-Value: 0.000e+0, PID: 52.73 | (Full=PREDICTED: cysteine-rich {ECO:0000313|EMBL:V... [more] |
| A0A7N2LA30 | E-Value: 0.000e+0, PID: 53.65 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |