MLVIIMEKFGYCHYVNVVSIDAAWFLSLYLFICRCEKQFSQYTCPRCNTR
YCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQ
EEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQ
RAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKS
EIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLR
LYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLR
HVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPR
KSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLAC
TGNRKDTLSVQERARPRGKMLIEEV*
| Relationships |
|---|
| The polypeptide, DCAR_009648, derives from mRNA, DCAR_009648. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A7J7GCQ1 (HIT-type domain-containing protein {ECO:0000259|PROSITE:PS51083})
HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 268/396 (67.68%), Postives = 323/396 (81.57%), Query Frame = 0
Query: 31 FICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
+CR C+KQFSQYTCPRCNTRYCSL CYKSH CTESFMR+NVVEE++QL+P+D KQKM+ IL+RFH++EE+DN DE DS SE IQKILSG EI V+DLS +EKK FQRAV SGELS++IEPWEPWWLKPSA+TI LS +G+RLVQP+ + E++AS + + +DQS IPPGPETPLPP+SKLS+T PSPLLAVHLVDIIYSYCFTLRLYNG+W +DPIGS LSVS VLGQGG+PETV EAVSHCLEQTCSP RH+GGLQFGLG+LDDV+ LLS+GG+ALVCLLCD QR+IQAAE ELKSEKPRKS++ E +G LK AERKV+F++CWVHEQ + W S+A++V+AEKS+ + G++ L ++ + RGK LIEEV
Sbjct: 23 IVCRVCQKQFSQYTCPRCNTRYCSLQCYKSHCLRCTESFMRENVVEEMRQLQPDDENKQKMLDILKRFHSEEEMDNMDE---------DDSTLSEETIQKILSGYEISVDDLSAEEKKHFQRAVASGELSKLIEPWEPWWLKPSARTISLSREGTRLVQPLAKQETVASPPDDLGSDQSYEIPPGPETPLPPISKLSSTEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDPIGSATVVLSVSSVLGQGGQPETVLEAVSHCLEQTCSPAFRHMGGLQFGLGVLDDVISLLSLGGSALVCLLCDLQRLIQAAEGELKSEKPRKSKKSEMRGKLKLAERKVFFILCWVHEQPGEAWSSLAAIVKAEKSSTMEFGGSKGVNLRMESKVETRGKALIEEV 409
Match: A0A5B6YGC7 ((Putative zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|EMBL:MPA30820.1}))
HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 247/396 (62.37%), Postives = 312/396 (78.79%), Query Frame = 0
Query: 31 FICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
FIC C+KQFS+YTCPRCNTRYCSL CYKSH CTESFMR+NVVEEL+QL+P+D TKQKM+ IL+RFH++E++++ DE DS SE I+KILSGG+I +DLS + KK FQRAV SGELS++IEPW+PWWLKPSA+TI LS++G++L+QP+V+ E++ S + E+DQ IP GPETPLPPV KLS+T PSPLLAV LVDIIYSYCFTLRLYNG+W +D +GS M LS+S VLGQGG+PETV EAVS CLEQTCSP R +GGLQFG GLLDDV+ LL +GG+A+VCLLCD R IQAAE+ELK EKP++ +RVE L+ AERK+++MMCWVHEQ + W S+A++V EK + + C GN T +++++A GK+LIEE+
Sbjct: 23 FICLVCQKQFSKYTCPRCNTRYCSLQCYKSHGLRCTESFMRENVVEELRQLQPDDETKQKMLDILKRFHSEEDMNSMDE---------DDSTSSEETIRKILSGGQISYDDLSAEGKKHFQRAVASGELSKLIEPWDPWWLKPSARTISLSQEGTQLIQPLVKQETVISPQDDTESDQLHDIPRGPETPLPPVRKLSSTEPSPLLAVSLVDIIYSYCFTLRLYNGDWQSDAVGSAMVILSLSSVLGQGGQPETVLEAVSQCLEQTCSPAFRDMGGLQFGFGLLDDVISLLYLGGSAIVCLLCDLWRFIQAAERELKLEKPKRLKRVEIGSKLRLAERKIFYMMCWVHEQPGEAWSSLAAIVRVEKDSAMDCGGNGSGTSTMEDKAT-MGKILIEEI 408
Match: A0A5N6R588 (HIT-type domain-containing protein {ECO:0000259|PROSITE:PS51083})
HSP 1 Score: 515.768 bits (1327), Expect = 1.381e-180
Identity = 248/396 (62.63%), Postives = 311/396 (78.54%), Query Frame = 0
Query: 31 FICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
IC C+KQFSQYTCPRCN+RYCSL CYKSHS CTESFMRDNVV EL Q++P+D TKQKM+ IL+R H++EE D+ DE D T + S+ +QKILSG ++ +DLS +EKK+FQRA+ SGELS+MIEPW+PWWLKPSA+TI LS++G++LVQP+ + E++ S E +E++ S IP GPE+PLPPVSKLS+T PSP+LAVHLVDI+YSYCFTLRLYNG+W +D +GS M LSVS VLGQGG+PETV EA+SHCLEQTCSP R +GGLQ GL L+DDV+ LLS+GG ALV LCD QR+IQA E+ELKSEKP+ SRRVE + LK AERK+YF+MCWVHEQ + W S+A+MV EKS+ + G+ K + + +A RG+ LIEE+
Sbjct: 23 IICHVCQKQFSQYTCPRCNSRYCSLRCYKSHSLRCTESFMRDNVVGELGQMQPDDETKQKMLDILKRLHSEEETDSMDE--DDT------TTLSDETVQKILSGDQVCFDDLSAEEKKQFQRALASGELSKMIEPWDPWWLKPSARTISLSKEGTQLVQPLDKKEALVSLEEDLESNPSSEIPHGPESPLPPVSKLSSTEPSPMLAVHLVDILYSYCFTLRLYNGDWQSDAVGSAMVVLSVSAVLGQGGQPETVLEALSHCLEQTCSPAYRQMGGLQLGLILIDDVISLLSLGGPALVYSLCDLQRLIQAGERELKSEKPKNSRRVEIRSKLKLAERKIYFIMCWVHEQPGEAWSSLAAMVGGEKSSAMDYEGS-KQPVKMSNKAETRGRALIEEI 409
Match: A0A251VIN3 ((Putative HIT-type Zinc finger family protein {ECO:0000313|EMBL:OTG34561.1}))
HSP 1 Score: 512.301 bits (1318), Expect = 4.448e-179
Identity = 243/395 (61.52%), Postives = 301/395 (76.20%), Query Frame = 0
Query: 32 ICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
ICR C+KQFSQYTCPRCNTRYCSL CYKSHS CTESFMRDNV+EE++QLEP D TKQKM+ IL+RFH++EE ++ D+ D + +S SE IQKI+SG EI +DLS +EKK FQRA+ SGELS++IEPWEPWWLKPSAKTI LS G++ VQPI +HE S D + PPGPET LPPV+KLS++ PSPLLA+HLVDI+YSYCFTLRLYNG+W +DP+ S L+VSL LGQ G+PETVSEA+S+CLEQTCSP RH+GG QFGLG++DDV LLS+GG L+C LCD RM+ A KE+K+EK R +R E K LKS ERKVYF++CWVHEQ ++ W S+A +V AEK+A + GN K + Q++ +GK++IEEV
Sbjct: 33 ICRVCQKQFSQYTCPRCNTRYCSLPCYKSHSLRCTESFMRDNVMEEMQQLEPGDDTKQKMLDILKRFHSEEEAESMDDDNDGS----AESALSEETIQKIMSGLEISFDDLSTEEKKHFQRAIASGELSKLIEPWEPWWLKPSAKTISLSRDGTQRVQPITKHEPDPS-------DLTYEFPPGPETALPPVNKLSSSEPSPLLAIHLVDILYSYCFTLRLYNGDWQSDPVDSATVVLTVSLALGQSGQPETVSEALSYCLEQTCSPAFRHMGGPQFGLGVIDDVASLLSLGGDGLICALCDLHRMLTAGLKEVKTEKVRNVKRTEMKAKLKSGERKVYFLICWVHEQPQEAWSSLADLVMAEKNATMGYMGNAKVSWKAQKKEDRKGKVIIEEV 416
Match: A0A5B6YGC6 ((Putative zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|EMBL:MPA30821.1}))
HSP 1 Score: 511.531 bits (1316), Expect = 9.279e-179
Identity = 250/396 (63.13%), Postives = 313/396 (79.04%), Query Frame = 0
Query: 31 FICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
FICR C+KQFSQYTCPRCNTRYCSL CYKSH CTESFMR+NVVEEL+QL+P+D TKQKM+ IL+RFH++E++++ DE DS SE I+KILSGG+I +DLS + KK FQRAV SGELS++IEPW+PWWLKPSA+TI LS++G++L+QP+V+ E++ S + E+DQ IP GPETPLPPV KLS+T PSPLLAV LVDIIYSYCFTLRLYNG+W +D +GS M LS+S VLGQGG+PETV EAVS CLEQTCSP R +GGLQFG GLLDDV+ LL +GG+A+VCLLCD R IQAAE+ELK EKP+K +RVE L+ AERK+++MMCWVHEQ + W S+A++V EK + + C GN T +++++A GK+LIEE+
Sbjct: 23 FICRVCQKQFSQYTCPRCNTRYCSLQCYKSHGLRCTESFMRENVVEELRQLQPDDETKQKMLDILKRFHSEEDMNSMDE---------DDSTLSEETIRKILSGGQISYDDLSAEGKKHFQRAVASGELSKLIEPWDPWWLKPSARTISLSQEGTQLIQPLVKQETVISPQDDTESDQLHDIPRGPETPLPPVRKLSSTEPSPLLAVSLVDIIYSYCFTLRLYNGDWQSDAVGSAMVILSLSSVLGQGGQPETVLEAVSQCLEQTCSPAFRDMGGLQFGFGLLDDVISLLYLGGSAIVCLLCDLWRFIQAAERELKLEKPKKLKRVEIGSKLRLAERKIFYMMCWVHEQPGEAWSSLAAIVRVEKDSAMDCGGNGSGTSTMEDKAT-MGKILIEEI 408
Match: A0A6J1AA07 ((zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|RefSeq:XP_021283601.1}))
HSP 1 Score: 510.76 bits (1314), Expect = 1.522e-178
Identity = 249/396 (62.88%), Postives = 305/396 (77.02%), Query Frame = 0
Query: 32 IC--RCEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
IC RC+KQFSQYTCPRCN+RYCSLHCYKSHS CTESFMR+NVVEEL+QL+P+D K+KM+ IL+RFH++EE DE D DS S+ IQKILSG E+ +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS G+RLVQPI E+ + +E++QS IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNG+W +D IGS M LS+S VLGQ G+PETV EA+S+CLEQTCSP RH+GGLQFGL L+DDV LLS+GG AL+C+L D QRMIQA E+ELKSEKPRK R+ E K LK AERKV+F+MCWVHEQ + W S+ +MV+AEKS+ + G K ++ +A +GK+LIEE+
Sbjct: 24 ICHVRCQKQFSQYTCPRCNSRYCSLHCYKSHSLGCTESFMRENVVEELRQLQPDDEIKRKMLEILKRFHSEEETHTVDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNQSSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGDWQSDAIGSAMVVLSISCVLGQAGQPETVREALSYCLEQTCSPAYRHIGGLQFGLVLVDDVATLLSLGGPALICMLFDLQRMIQAGEEELKSEKPRKLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKMENKAENKGKVLIEEM 411
Match: A0A061G415 ((HIT-type Zinc finger family protein {ECO:0000313|EMBL:EOY23937.1}))
HSP 1 Score: 508.834 bits (1309), Expect = 7.486e-178
Identity = 249/395 (63.04%), Postives = 302/395 (76.46%), Query Frame = 0
Query: 32 ICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
IC C+KQFSQYTCPRCN+RYCSLHCYKSHS CTESFMR+NVVEEL+QL+P+D K+KM+ IL+RFH++EE DE D DS S+ IQKILSG E+ +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS G+RLVQPI E+ + +E+++S IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNGEW +D IGS M LS+S VLGQ G+PETV EAVS+CLEQTCSP RH+GGLQFGL L+DDV LLS+GG AL+C+L D QRMIQA EKELKSEKPR R+ E K LK AERKV+F+MCWVHEQ + W S+ +MV+AEKS+ + G K + +A +GK+LIEE+
Sbjct: 24 ICHVCQKQFSQYTCPRCNSRYCSLHCYKSHSLRCTESFMRENVVEELRQLQPDDEIKRKMLEILKRFHSEEETHTLDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNESSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGEWQSDAIGSAMVVLSISCVLGQAGQPETVREAVSYCLEQTCSPAYRHIGGLQFGLALVDDVATLLSLGGPALICMLFDLQRMIQAGEKELKSEKPRMLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKRENKAENKGKVLIEEM 410
Match: A0A6J1AA60 ((zinc finger HIT domain-containing protein 2 isoform X2 {ECO:0000313|RefSeq:XP_021283609.1}))
HSP 1 Score: 508.834 bits (1309), Expect = 7.906e-178
Identity = 248/395 (62.78%), Postives = 304/395 (76.96%), Query Frame = 0
Query: 32 ICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
IC C+KQFSQYTCPRCN+RYCSLHCYKSHS CTESFMR+NVVEEL+QL+P+D K+KM+ IL+RFH++EE DE D DS S+ IQKILSG E+ +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS G+RLVQPI E+ + +E++QS IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNG+W +D IGS M LS+S VLGQ G+PETV EA+S+CLEQTCSP RH+GGLQFGL L+DDV LLS+GG AL+C+L D QRMIQA E+ELKSEKPRK R+ E K LK AERKV+F+MCWVHEQ + W S+ +MV+AEKS+ + G K ++ +A +GK+LIEE+
Sbjct: 24 ICHVCQKQFSQYTCPRCNSRYCSLHCYKSHSLGCTESFMRENVVEELRQLQPDDEIKRKMLEILKRFHSEEETHTVDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNQSSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGDWQSDAIGSAMVVLSISCVLGQAGQPETVREALSYCLEQTCSPAYRHIGGLQFGLVLVDDVATLLSLGGPALICMLFDLQRMIQAGEEELKSEKPRKLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKMENKAENKGKVLIEEM 410
Match: A0A7C9B1K1 (HIT-type domain-containing protein {ECO:0000259|PROSITE:PS51083})
HSP 1 Score: 508.064 bits (1307), Expect = 1.713e-177
Identity = 245/395 (62.03%), Postives = 305/395 (77.22%), Query Frame = 0
Query: 32 ICR-CEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
ICR C+KQFSQYTCPRCNTRYCSLHCYKSHS CTESFMRDNVV+ELKQL P++ +K+KM+ IL+RFH ++E ++S + + T SE IQK+LSGG+I +DL+ +EKK FQRA+ SGELS+MIEPWEPWWLKPSA+TI LS +G+RL+QPIV E +S + EN +P GPE PLPP+S+L++ PSPLLA+HLVDI+YSYCFTLRLYNG+W +D G+VM LSVS VLGQ +PE+V EAVS CLEQTCSP RHVGGLQFG ++DDV+ L S+GG ALVC LCD QR+IQAAE+ELKSEKPRK+ R E K LK+AERK+YF+MCW HEQ E+ W S++++V+AEK++ + C GNR E+ + K LIEEV
Sbjct: 26 ICRVCQKQFSQYTCPRCNTRYCSLHCYKSHSLRCTESFMRDNVVDELKQLRPDEESKKKMLEILKRFHAEDEEEDSMDEDEPT--------LSEETIQKVLSGGDINFDDLTVEEKKLFQRAMASGELSKMIEPWEPWWLKPSARTISLSREGTRLIQPIVGEEISSSNAGDFENKPESDVPAGPEAPLPPLSRLTSAEPSPLLAIHLVDILYSYCFTLRLYNGDWQSDACGAVMVILSVSSVLGQAAQPESVLEAVSCCLEQTCSPAFRHVGGLQFGFAVVDDVMSLFSLGGVALVCALCDLQRLIQAAERELKSEKPRKANRTEVKSKLKAAERKIYFIMCWAHEQPEEVWSSLSALVKAEKASAMECQGNRPLK---AEKPNNKSKTLIEEV 409
Match: A0A6P9EM48 ((zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|RefSeq:XP_035543717.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 4.445e-177
Identity = 240/397 (60.45%), Postives = 304/397 (76.57%), Query Frame = 0
Query: 31 FIC--RCEKQFSQYTCPRCNTRYCSLHCYKSHSRSCTESFMRDNVVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 425
IC RC+KQFSQYTCPRCN+RYCSLHCYKSHS CTESFMR+NVVEEL+Q++ ND TK+KM+ IL+RFH++EE ++ DE S SE +IQ+ILSG ++ +DLS EKK+FQRA+ SGELS+MIEPW+PWWLKP A+TI LS++G++L+Q + + E+ E +E++Q+ IPPGPE+PL P+SKLS+T PSPLLAVHLVDI+YSYCF LRLYNGEW +D IGS M LSVS VLG+G +PETV EA+SHCLEQ CSP RH+GGLQ GL L++DV+ LLS+GG ALVC LCD QR+IQ E+ELKSEKP+K RVE + LK A RK+YFMMCWVHEQ + W S+A+++ AEKS+ + G K + + RGK+L+EE
Sbjct: 23 IICHVRCQKQFSQYTCPRCNSRYCSLHCYKSHSLRCTESFMRENVVEELQQMQSNDETKRKMLDILKRFHSEEETESMDE---------DYSTVSEEIIQRILSGDQVDFDDLSAAEKKQFQRALASGELSKMIEPWDPWWLKPCARTISLSQEGTQLIQALDKQEASVLPQEDLESNQASEIPPGPESPLLPISKLSSTEPSPLLAVHLVDILYSYCFALRLYNGEWQSDTIGSAMVVLSVSSVLGEGRQPETVLEALSHCLEQICSPAYRHMGGLQLGLVLVEDVISLLSLGGPALVCSLCDLQRLIQTGERELKSEKPKKYTRVEIRSKLKLAGRKIYFMMCWVHEQPGEAWSSLAAILGAEKSSAVDYYGGSKQAVKTNNKGETRGKVLVEET 410
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7GCQ1 | E-Value: 0.000e+0, PID: 67.68 | HIT-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A5B6YGC7 | E-Value: 0.000e+0, PID: 62.37 | (Putative zinc finger HIT domain-containing protei... [more] |
| A0A5N6R588 | E-Value: 1.381e-180, PID: 62.63 | HIT-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A251VIN3 | E-Value: 4.448e-179, PID: 61.52 | (Putative HIT-type Zinc finger family protein {ECO... [more] |
| A0A5B6YGC6 | E-Value: 9.279e-179, PID: 63.13 | (Putative zinc finger HIT domain-containing protei... [more] |
| A0A6J1AA07 | E-Value: 1.522e-178, PID: 62.88 | (zinc finger HIT domain-containing protein 2 isofo... [more] |
| A0A061G415 | E-Value: 7.486e-178, PID: 63.04 | (HIT-type Zinc finger family protein {ECO:0000313|... [more] |
| A0A6J1AA60 | E-Value: 7.906e-178, PID: 62.78 | (zinc finger HIT domain-containing protein 2 isofo... [more] |
| A0A7C9B1K1 | E-Value: 1.713e-177, PID: 62.03 | HIT-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A6P9EM48 | E-Value: 4.445e-177, PID: 60.45 | (zinc finger HIT domain-containing protein 2 isofo... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |