DCAR_012552

Resource Type: 
Polypeptide
Name: 
DCAR_012552
Identifier: 
DCAR_012552.mRNA-protein
Sequence: 
MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVN
EAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSS
SSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESL
SLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVK
YEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGL
TICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAECTRVVAKTPKME
ALYLQDAIRDDRHHSRDSSNSSSRSSLEVNSFEKPRVNGNPGFSEKNSIS
NDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDE
RDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYP
RTLSMPLDSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNL
ENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEA
GVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGL
LESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVD
KAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQL
CISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGS
GRGKT*
Sequence Length: 
756
Sequence Checksum: 
6ea9dde1d9e3a4d2152967b74729936b
View location in JBrowse: 
DCARv2_Chr3:48207932..48211225+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_012552, derives from mRNA, DCAR_012552.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B4N1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 982.63 bits (2539), Expect = 0.000e+0
Identity = 512/764 (67.02%), Postives = 618/764 (80.89%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            +K MP +  Y+N+AS LK LK +LD+VV+ K+ SDE LCKEC+ LD+AV EAREF+E+WSP+MSK  SVL  EPL++ +Q SS+ I  ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LK Q  G  P S++L  IIESLSLT++ ELLKES+ALEKERMKA   K +G+++ I+ +++LIS IRN +VK E FK+ING+++PLYFRCPLSL LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I   N ++CT  ++     E +  QD IR D    S  S++S+SRSSLEV N F+K + + +  FSE+ S    S ++ KFDHSSPEQS  HSRS S SS ++S  Y+PT S D SR SSK+++  +LSGEMTSEC +SS S +N   +P L+GKQYHSS  + E S  G+RNYPRTLS+P  D GS+DL   SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR  I  CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K ++AEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV++EYRIKIGRS AVKALV LL SGTLRGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE V+TGSQRGKENAA+ILLQLCI+SPKYCRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG  G+GK+
Sbjct:   39 LKTMPTEKSYKNMASFLKHLKPVLDDVVDYKIPSDEDLCKECQELDIAVKEAREFMESWSPKMSKIYSVLQSEPLVMKVQSSSLEICRILCILLQSSPSTSSLTGVQHCMQELQCMELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQINHIIDLISHIRNYMVKLENFKAINGVSIPLYFRCPLSLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDCTNNISAPSHSEDVSAQDLIRMDSFRCSLRSNDSTSRSSLEVGNGFQKQKTDVSFRFSEEESNGCRSRETEKFDHSSPEQSYIHSRSESTSSAVSSIDYLPTASIDVSRVSSKHENVSELSGEMTSECPASSPSNKNSGFSPWLSGKQYHSSKTMAEISGNGNRNYPRTLSLPSSDPGSDDLAETSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVTIGRCGAIAPLLSLLYSEVKLTQEHAVTALLNLSINENIKAMMAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLDEYRIKIGRSSAVKALVDLLGSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEAVDTGSQRGKENAASILLQLCINSPKYCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGALGKGKS 802
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJS3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 966.066 bits (2496), Expect = 0.000e+0
Identity = 518/763 (67.89%), Postives = 625/763 (81.91%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            +K MP Q  YRN+AS LK LK +LD++V+ K++SDE+LCKECE LD+AVNEAREF+E WSP+ SK CSVL  EPL++ IQ SS  I  ILCRLL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LKRQ+ G  P S++L  IIESLSLT++ ELLKES+ALEKERMKA   K +G+++ IS +++L+S IRNC+VK E FK+ING+++PLYFRCPLSL+LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I   N ++ T  ++ +   E +  QD IR D  HS  S +S+SRSSLEV N F+K +   +  FSE+ S    S ++ KFDHSSPEQS  HSRS S SS I+S  Y+PT S D SR SSK+++  +LSGEMTSEC +SS S ++   +P L+GKQYHSS  + E +  G+ NYPRTLS+P  D GS+DL   SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR II  CGAI PL+SLL+S+VK TQEHAVTALLNLSIN N+K +IAEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL SGTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+DP +EMVDKAVA+LANLSTV+EG LAIAR GGIP LVE+V+TGSQRGKENAA+ILLQLCI+SPK+CRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG  G+GK+
Sbjct:  409 LKTMPTQKSYRNMASLLKHLKSMLDDLVDYKITSDEVLCKECEELDIAVNEAREFMERWSPRASKICSVLQSEPLMMKIQSSSHEICRILCRLLQSSPSTSSLTSVQHCMQELQCLELERISEHIEESLKRQREGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQISHIIDLMSHIRNCMVKLERFKAINGVSIPLYFRCPLSLKLMLDPVIVASGQTYERASIQMWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDSTNNISASSHFEDVSAQDLIRMDSFHSSHSHDSTSRSSLEVGNGFQKQKNGVSFRFSEEESNGCRSRETEKFDHSSPEQSYVHSRSESTSSAISSIDYLPTTSIDVSRVSSKHENVSELSGEMTSECPASSPSNKDSGFSPWLSGKQYHSSKTMAEMAGNGNLNYPRTLSLPSSDPGSDDLAATSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVIIGRCGAIAPLLSLLHSEVKLTQEHAVTALLNLSINENIKAMIAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLGSGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMDPATEMVDKAVALLANLSTVSEGCLAIARAGGIPLLVEVVDTGSQRGKENAASILLQLCINSPKHCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAMGKGKS 1171
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B465 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 959.518 bits (2479), Expect = 0.000e+0
Identity = 495/764 (64.79%), Postives = 609/764 (79.71%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAI-RDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLDS-GSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            +K MP +  Y+N+AS LK LK +LD+VV+ K+ SDE LCKEC+ LD+AV EAREF+E+WSP+MSK  SVL  EPL++ +Q SS+ I  ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LK Q  G  P S++L  IIESLSLT++ ELLKES+ALEKERMKA   K +G+++ I+ +V+LIS IRNC+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPN TVKALIANWC+EN I   N + CT  ++     E +  QD I  D+ H S  S++S+SRSSLEV N F+K + + +  F++K S    S  + KFDHSSP+Q+  H RS S  S ++   YVP  S D SR SSK+++  +LSGEMTSEC +SS SK+N   +P L GKQ+HSS ++ E  + G+ NYPRTLS+P    G +DL + SHV+KL++DL++ S EVQT+A AELR+LAKH++ENR  I  CGAI PL+SLL S+VK TQEHAVTALLNLSIN N+K++IAEAG +EPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AV++LV LL SGT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE+V+TGS RGKENAA+ILLQLCI+SPK+CRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG  G+GK+
Sbjct:   39 LKTMPTEKSYKNMASFLKHLKPVLDDVVDYKIPSDEDLCKECQELDIAVKEAREFMESWSPKMSKIYSVLQSEPLVMKVQSSSLEICRILCILLQSSPSTSSLTGVQHCMQELQCMELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQINHIVDLISHIRNCMVKLESFKTINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNNTVKALIANWCKENNIKVSNTSNCTDNISAPSHSEDVPAQDPICMDNFHCSSHSNDSTSRSSLEVGNGFQKQKNDVSFRFNKKESNGCRSRRTEKFDHSSPKQTYTHRRSESTLSAVSCIDYVPATSVDVSRVSSKHENVGELSGEMTSECPASSPSKKNSGFSPWLLGKQFHSSKIMAELGSNGNHNYPRTLSLPSSELGCDDLVSTSHVEKLVEDLKSQSDEVQTSAAAELRFLAKHDMENRAAIGRCGAIAPLLSLLCSEVKLTQEHAVTALLNLSINENIKSMIAEAGAMEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVRSLVDLLGSGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEVVDTGSHRGKENAASILLQLCINSPKFCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGALGKGKS 802
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B6C6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}) (Fragment))

HSP 1 Score: 924.08 bits (2387), Expect = 0.000e+0
Identity = 481/726 (66.25%), Postives = 587/726 (80.85%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMP-LDSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAV 717
            +K MP Q  YRN+AS LK LK +LD+VV+ K+ SDE+LCKECE LD++VNEAREF+E+WSP+MSK CSVL  EPL++ IQ SS+ I  +LCRLL+SSPS+SSL+ VQHC Q+ QC EL++ISE IE++LK Q  G  P S++L  IIESLSLT++ ELLKES+ALEKER KA   K +G+++ I+ +V+LIS IRNC+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I   N ++CT  ++     E +  QD IR D    S  S++S+SRSSLEV N F+K + + +  FSE+ S    S ++ KFDHSSPEQS  HSRS S SS ++S  Y+PT S D SR SSK+++  +LSGEMTSEC +SS S +N   +P L+GKQYHSS  + E S  G+RNYPRTLS+P  D GS+DL   SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR  I  CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K ++AEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AV++LV LL SGT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE+V+TGS RGKENAA+ILLQLCI+SPK+CRLVLQEGAV
Sbjct:   39 LKTMPTQKSYRNMASLLKDLKSMLDDVVDYKIPSDEVLCKECEELDISVNEAREFMESWSPRMSKICSVLQSEPLVIKIQTSSLEICRLLCRLLQSSPSTSSLTGVQHCMQKLQCLELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERKKAQVNKMKGELDQINHIVDLISHIRNCMVKLESFKTINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDCTNNISAPSHSEDVSAQDLIRMDSFRCSSRSNDSTSRSSLEVGNGFQKQKTDVSFRFSEEESNGCRSRETEKFDHSSPEQSYIHSRSESTSSAVSSIDYLPTASIDVSRVSSKHENVSELSGEMTSECPASSPSNKNSGFSPWLSGKQYHSSKTMAEISGNGNRNYPRTLSLPSSDPGSDDLAETSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVTIGRCGAIAPLLSLLYSEVKLTQEHAVTALLNLSINENIKAMMAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVRSLVDLLGSGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEVVDTGSHRGKENAASILLQLCINSPKFCRLVLQEGAV 764
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C5R2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 479/763 (62.78%), Postives = 592/763 (77.59%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEK---NSISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLDS-GSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            +K MP +  Y+NIAS LK L+ +LD+VV+ K+ SDE+LCKECE LD+AV EAREF+E+WSP+MSK  SVL  EP +  IQ SS+ I  ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE I +++K Q  G  P S++L  IIESLSLT++ ELLKES+ALEKERMKA   K +G    I+ +++LIS IR+C+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWC+EN I   N ++CT  ++     E +  QD +      S   ++S+S SSL+V N F+K + +    FSE+      S  + K DHSSP+Q+  H R+ S  S ++S  Y+PT S D SR SS++++  +LSGE+TSEC SSS S +N   +P L G Q+H S  + E +   + NYPRTLS+P  + G +DL + S+VKK+++DL + S EVQT+A AELR+L+KHN+ENR  I  CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K++IAEAG +EPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL  GT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR G IP LVE+V+TGSQRGKENAA+ILLQLCI+S K+C LVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQRE   G+GK+
Sbjct:   25 LKTMPTEKSYKNIASLLKHLRPVLDDVVDCKIPSDEVLCKECEELDIAVKEAREFMESWSPKMSKIYSVLQSEPFVKKIQSSSLEICRILCFLLQSSPSTSSLTGVQHCMQELQCMELERISEHILESMKSQIEGTVPPSEHLLKIIESLSLTSNQELLKESMALEKERMKAEVNKMKGKQGQINHIIDLISHIRSCMVKLEGFKAINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCKENNIKVSNTSDCTDNISAPSHSEDVSAQDFL-----CSSHRNDSASTSSLKVGNGFQKQKNDVPFRFSEEEPSGCQSRGTEKCDHSSPKQTHIHRRNESNLSAVSSIDYLPTSSIDLSRVSSEHENVCELSGELTSECPSSSPSNKNSGFSPWLLGNQFHCSKTMAELAGNKNHNYPRTLSLPSSTLGCDDLVSISYVKKVVEDLESQSYEVQTSAAAELRFLSKHNMENRVTIGCCGAIVPLLSLLYSEVKLTQEHAVTALLNLSINENIKSMIAEAGAMEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLGLGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGAIPLLVEVVDTGSQRGKENAASILLQLCINSTKFCLLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREVAVGKGKS 782
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MJ10 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 476/763 (62.39%), Postives = 588/763 (77.06%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINL--AECTRVVAKTPKMEALYLQDAIRDDRH-HSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            MK MP Q  YR++  +LK+LK +LD VV+ K+ SDEILCKECE LD AVNE REF+ENWSP+MSK CSVL  EPLL+ I+ SS+ I HILCRLL+SS S+ SLS VQ+C QE QC + ++++E IE+A+  Q+  + P + +L  IIE L+LT + ELLKESI +EKER+ A   K++G+++ I Q+VNL+S IRNC+VK + F++ +G+ +P YFRCPLS  LMLDPVIVA+GQTYER+SIQ WLDHGLTICP TRQ L+HTNLIPNYTVKA+I+NWCEEN I    +E T  V+     +    QD IR D    S  +SNS SRSS EV N FEK + + +   + KNS    S ++ KF H SPEQS  HSRS SASS I+S  Y+P +S +  R SSK ++  +LSGE+T+EC  +S   +       L GK++ +  + VE +   + NY R  S+P  DSGS+++T+ SHVKKLI+DL++ S+EVQTTA  ELR LAKHN+ENR II  CGAI PL+SLL S++K+TQEHAVTALLNLSIN N K +IAEAG IEPLIHVL+TGN GA+EN+AAT+FS+SV+EEY++KIGRSGAVKALV LL  GTLRGKKDAATALFNLSI HENKARIVQAGAVK+LVKL+DP + MVDKAVA+LANLST+ EG LAI RE GIP LVEIVE+GSQRGKENAA++LLQLC++S KYC LVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG +G+GK+
Sbjct:   25 MKAMPIQKDYRDLVGALKLLKAVLDEVVDYKIPSDEILCKECEELDTAVNETREFMENWSPKMSKLCSVLWSEPLLMKIRSSSIDICHILCRLLQSSSSTISLSNVQNCMQELQCLKQERVTEYIEEAIISQRDNIVPCTKHLLKIIEFLNLTPNQELLKESICVEKERINAQVNKAKGELDQIYQIVNLVSHIRNCMVKIQRFEARSGVPIPSYFRCPLSSELMLDPVIVASGQTYERSSIQKWLDHGLTICPKTRQTLTHTNLIPNYTVKAMISNWCEENNIKTYNSERTEFVSVPSLSDHASPQDLIRTDSSPFSLHNSNSMSRSSHEVGNGFEKQKNDASSRLNGKNSNGFQSRETEKFYHPSPEQSYIHSRSESASSAISSVDYMPPVSDEVPRISSKRENVNELSGEITTECLDTSPQCKEPGFPSWLPGKKFDNLKIEVEVAGNINHNYLRANSLPFSDSGSDEVTSASHVKKLIEDLKSQSNEVQTTAAEELRLLAKHNMENRVIIGQCGAIAPLVSLLSSEMKRTQEHAVTALLNLSINENNKAMIAEAGAIEPLIHVLKTGNDGAKENSAATLFSLSVLEEYKVKIGRSGAVKALVDLLHLGTLRGKKDAATALFNLSILHENKARIVQAGAVKYLVKLMDPATGMVDKAVALLANLSTIGEGRLAIGREEGIPLLVEIVESGSQRGKENAASVLLQLCLNSSKYCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 787
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HZL0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 883.634 bits (2282), Expect = 0.000e+0
Identity = 463/764 (60.60%), Postives = 578/764 (75.65%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLA---ECTRVVAKTPKMEALYLQDAI-RDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            +K MP Q   RN+   LK+LK +LD+VV  K+ SDEIL KECE LD+AVNEAREF+ENW P+MSK  SVL  E L++ IQ SS+ I  ILCRLL SSPS S+L+ +QHC Q+ Q  E K+ISE IE AL+ Q+  + P +  L+ IIESLSLT+  ELLKES+A+E+ERM A   K+  +++ I+Q+V L+S IR+C+V+   F++ING+ +P YFRCPLSL LM+DPVIVA+GQTYER+SIQ WLD GL ICP TRQ L+H NLIPNYTVKALI NWCEEN I L+   E T +      ++ +  QD I  D    S  SSN +SRSSLEV N  EK +V+ +  F  + S    S +  K +  SPEQS  HSR+ S SS ++S   +PT S++ SR S+K ++   LSGE+TSEC +S S+ R++  +P  +GKQ+HSS   VE  + G    PR LS+P  D   +DLTT+SHV+KL++DL++ S+E+QT A +ELR LAKHN+ENR II  CGAI PL+ LLYS+VKQTQE+AVTALLNLSIN   K IIAEAG IE LIHVL++GN+GA+EN+AAT+FS+SV+EEY+ KIG SGAVKALV LL SGTLRGKKDAATALFNLSI HENK RI+QAGAVK+LV+L++P + MVDKAVA+LANLS ++EG  AI REGGIP LVE+VETGS RGKENAA+ILLQLCI+SPK+C LVLQEGA+PPLV LSQSGT RAKEKAQQLL HFRNQREG + +GK+
Sbjct:   25 LKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNGIEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTASTELSRISNKQENGTGLSGEITSECHASPSN-RDLEFSPWFSGKQFHSSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 787
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PP79 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 876.7 bits (2264), Expect = 0.000e+0
Identity = 455/758 (60.03%), Postives = 579/758 (76.39%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAECTR----VVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLD-SGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREG 748
            +K +P    Y N+ S LK+LK +LD+VV+ K+ SD+ L KECE LD+ VNEAREF+E+WS +MSK CSVL  E L++ +Q SS  I  I+ RLL+S PS+S  + VQ    E QC +L+++SE IE+ALK Q+ G AP S+ L+ IIESL LTA+ ELLKESIALEKER  A   K++G+I+ I+ ++ L+S +R+C+VK E F+++NG+ VP YFRCPLSL LM DPVIVA+GQTY+R SIQ WLD+GL ICP +RQMLSHTNLIPNYTVKALIANWC++N I  +        +     + E    QD I  +    S  S++S+SRSSLEV N F+K +++ +  FSE+ S    S ++  FD SS EQS  HSR+ SASS +++  ++P   +  SR SSK+++  ++SGE+ SEC++SS S +N   +P+L+ K +HSS  + E ++ G+ NY +T S+P   SG +D+TT SHV+KL++DL++ S+ VQT+A AELR+LAKHN ENR II   GAI  L+SLLYS+VK TQEHAVTA+LNLSIN NVK  IAEAG IEPLIHVL TG+SGA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL  GTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+DP +EMVDKAVA+LANLST+TEG  AI R GGIP LVEI+ETGS RGKENA++IL QLCI++ K+CRLVLQEGAVPPLV LSQ+GT RAKEKAQQLL HFRNQREG
Sbjct:   40 IKTVPTHKSYGNMVSLLKLLKPVLDDVVDDKIPSDDGLYKECEELDIIVNEAREFVESWSLKMSKICSVLKSEELVMKMQHSSQEICRIVRRLLQSLPSTSCFTGVQ----ELQCLKLERVSECIEEALKSQREGRAPPSEQLTRIIESLGLTANQELLKESIALEKERTMAQVNKAKGEIDQINNIIELMSHVRDCMVKVENFRAMNGVCVPSYFRCPLSLELMFDPVIVASGQTYDRASIQKWLDNGLYICPKSRQMLSHTNLIPNYTVKALIANWCDQNHIKFSNTLERNNTITPAVSQSENAPCQDLIHTESFRCSSHSNDSTSRSSLEVGNEFQKLKIDASFRFSEEESNGCRSRETENFDLSSSEQSYVHSRTESASSVVSTIDFLPAAPTYVSRISSKHENGSEVSGEIISECEASSPSYKNSEFSPNLSEKLFHSSKTMAEVASNGNSNYRKTFSLPSSKSGCDDVTTTSHVEKLVEDLKSQSNAVQTSAAAELRFLAKHNTENRVIIGCSGAIALLLSLLYSEVKLTQEHAVTAVLNLSINENVKAKIAEAGAIEPLIHVLRTGSSGAQENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLHMGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMDPTTEMVDKAVALLANLSTITEGCTAIVRAGGIPVLVEIIETGSNRGKENASSILFQLCINNKKFCRLVLQEGAVPPLVALSQTGTPRAKEKAQQLLSHFRNQREG 793
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSE2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 462/755 (61.19%), Postives = 575/755 (76.16%), Query Frame = 0
 
Query:    1 MKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAEC-TRVVAKTP---KMEALYLQDAIRDDRHHSRDSSN-SSSRSSLEV-NSFEKPRVNGNPGFSEKNSISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLD-SGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREG 748
            +K +P Q   RN+AS LK+LK +LDNVV+ K+ SDE L KECE LD AVNEAREF+E+WS +MSK CSVL  E L++ +Q SS+ I  I+C+LL+SSPSSS  + VQHC QE QC +L+++SE IE+ALK Q  G    S+ L+ IIESL LTA  ELLKESIALEKERM A   K++GDI+ I+ ++ L+  IR+C+VK E F+ +NG+ VP YFRCPLSL LMLDPVIVA+GQTY+R SIQ WLD+GL ICP TRQMLSHTNLIPNYTVKALIA+WCE+N I  +    R  A TP   + E    QD +  +       SN S+SRSSLEV N F+K +   N         S ++  FDHSS EQS  HSR+ SASS ++S  ++P  S+D SR S K+++  ++SGE+ SEC +SS   +N   +P+L+ K ++ S  + E ++ G+ NYPRT S+P   SG +D+TT SHV+KL++DL++ S+ VQT+ATAELR+LAKHN ENR II   GAI  L+SLLYS++K TQEHAVTALLNLSIN NVK  IAEAG I PLIHVL TG+SGA+ENAAA +FS+SV++EYRIKIGRS AVKALV LL  GTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+D  +EMVDKAVA+LANLST+ EG  AI R GG+P L+E++ETGS RGKENA++IL QLCI++ K+CRLVLQEGAVPPLV LSQ+GT RAKEKAQQLL HFR+QREG
Sbjct:   40 IKTVPTQKSCRNMASLLKLLKPVLDNVVDDKIPSDEDLYKECEELDTAVNEAREFVESWSSKMSKICSVLKSEELVMKMQCSSLDICRIVCQLLQSSPSSSCFTGVQHCMQELQCLKLERVSEFIEEALKSQSEGRVLPSEQLTRIIESLGLTAYQELLKESIALEKERMMAQVNKAKGDIDQINSIIELMLHIRDCMVKVENFRVMNGVYVPSYFRCPLSLELMLDPVIVASGQTYDRASIQKWLDNGLYICPKTRQMLSHTNLIPNYTVKALIASWCEQNHIKFSNILERNNAITPVISQSENAPCQDLVHTESFRCYSHSNDSASRSSLEVGNEFQKLKSKPN------GCRSRETENFDHSSHEQSYVHSRTESASSAVSSIDFLPAASTDVSRISGKHENASEVSGEIISECAASSPLYKNSELSPNLSEKLFNCSKTMAEVASKGNSNYPRTFSLPSSKSGCDDVTTTSHVEKLVEDLKSQSNAVQTSATAELRFLAKHNTENRVIIGCSGAIASLLSLLYSEIKLTQEHAVTALLNLSINENVKAKIAEAGAIAPLIHVLRTGSSGAQENAAAALFSLSVLDEYRIKIGRSSAVKALVDLLHMGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMD--TEMVDKAVALLANLSTIAEGCKAIVRAGGMPLLLEVIETGSNRGKENASSILFQLCINNTKFCRLVLQEGAVPPLVALSQTGTPRAKEKAQQLLSHFRSQREG 786
[Close]
BLAST of DCAR_012552 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438KD52 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 457/748 (61.10%), Postives = 569/748 (76.07%), Query Frame = 0
 
Query:   17 LKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLA---ECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 755
            LK+LK +LD+VV  K+ SDEIL KECE LD+AVNEAREF+ENW P+MSK  SVL  E L++ IQ SS+ I  ILCRLL SSPS S+L+ +QHC Q+ Q  E K+ISE IE AL+ Q+  + P +  L+ IIESLSLT+  ELLKES+A+E+ERM A   K+  +++ I+Q+V L+S IR+C+V+   F++ING+ +P YFRCPLSL LM+DPVIVA+GQTYER+SIQ WLD GL ICP TRQ L+H NLIPNYTVKALI NWCEEN I L+   E T +      ++ +  QD I  D    S  SSN +SRSSLEV N  EK +V+ +  F  + S    S +  K    SPEQS  HSR+ S SS ++S   +PT S++ SR S+K ++   LSGE+TSEC +S S+ R++  +P  +GKQ+HSS   VE  + G    PR LS+P  D   +DLTT+SHV+KL++DL++ S+E+QT A +ELR LAKHN+ENR II  CGAI PL+ LLYS+VKQTQE+AVTALLNLSIN   K IIAEAG IE LIHVL++GN+GA+EN+AAT+FS+SV+EEY+ KIG SGAVKALV LL SGTLRGKKDAATALFNLSI HENK RI+QAGAVK+LV+L++P + MVDKAVA+LANLS ++EG  AI REGGIP LVE+VETGS RGKENAA+ILLQLCI+SPK+C LVLQEGA+PPLV LSQSGT RAKEKAQQLL HFRNQREG + +GK+
Sbjct:    5 LKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNGIEKLKVDVSTRFGGEESNVCKSREPEKLVRQSPEQSYIHSRTESTSSAVSSIDSLPTASTELSRISNKQENGTGLSGEITSECHASPSN-RDLEFSPWFSGKQFHSSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 751
Match NameStatsDescription
A0A5B7B4N1E-Value: 0.000e+0, PID: 67.02RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A5J5BJS3E-Value: 0.000e+0, PID: 67.89RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A5B7B465E-Value: 0.000e+0, PID: 64.79RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A5B7B6C6E-Value: 0.000e+0, PID: 66.25RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A5J5C5R2E-Value: 0.000e+0, PID: 62.78RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A7N2MJ10E-Value: 0.000e+0, PID: 62.39RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
F6HZL0E-Value: 0.000e+0, PID: 60.60RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A2R6PP79E-Value: 0.000e+0, PID: 60.03RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A2R6QSE2E-Value: 0.000e+0, PID: 61.19RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]
A0A438KD52E-Value: 0.000e+0, PID: 61.10RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.