Resource Type:
Polypeptide
Name:
DCAR_012079
Identifier:
DCAR_012079.mRNA-protein
Sequence:
MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIA
EVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTE
ELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDY
QAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLS
ALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVG
RLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGE
VCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQY
DKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEI
FGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGS
IWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPW
L*
Sequence Length:
502
Sequence Checksum:
9715e75e15148a9d116a3961d4a9b637
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_012079, derives from mRNA, DCAR_012079. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R4F0 ((Aldehyde dehydrogenase family 2 member like {ECO:0000313|EMBL:PSS20880.1}))
HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 379/501 (75.65%), Postives = 438/501 (87.43%), Query Frame = 0
Match: A0A2R6R4F0 ((Aldehyde dehydrogenase family 2 member like {ECO:0000313|EMBL:PSS20880.1}))
HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 379/501 (75.65%), Postives = 438/501 (87.43%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M ESNG L IPEIKFTKLFING FV S+SGKTFETIDPRT EVIA+++EG KEDVDLAVKAAR+AFD GPWPR G+ R +IMMK A+LIDEN EELA LD IDAGKL+ GK +DIP AAET RY+AGAA KIHG+TLKMS+++Q YTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+P+GV+NV+ G+GP AGAA++SHMD+DKV FTGST VGRLVMQAAA+SNLK V+LELGGKSP+IIFDDA +DKA LAL+G L+NKGE+C A SRVFVQEGIY++F+KKL EK K+WVVGDPFDP +QGPQ++KKQ+D+ILSYIEHGKREGA LLTGGKP G KGYYIEPTIFTDVKDDM+IAKEEIFGPVMS++KFKT EE IKRANAT YGL AG++TNNLN ANTVSRSIRAG IWINCY+ FD D P+GGYK SG+GRD+G +GL++YL VK V TP+Y++PWL
Sbjct: 1 MGAESNGSLKCLSEIPEIKFTKLFINGKFVDSISGKTFETIDPRTGEVIAKIAEGDKEDVDLAVKAAREAFDCGPWPRLPGSARGKIMMKFAELIDENAEELATLDCIDAGKLFDWGKKVDIPSAAETLRYFAGAAGKIHGETLKMSSEHQGYTLREPIGVVGHIIPWNFPSTMFLMKVSPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPNGVINVITGFGPTAGAAISSHMDIDKVSFTGSTEVGRLVMQAAAMSNLKPVSLELGGKSPLIIFDDANIDKATDLALLGILFNKGEICVAGSRVFVQEGIYDEFVKKLTEKAKTWVVGDPFDPKVRQGPQVDKKQFDRILSYIEHGKREGATLLTGGKPCGHKGYYIEPTIFTDVKDDMVIAKEEIFGPVMSLMKFKTVEEAIKRANATKYGLAAGIVTNNLNIANTVSRSIRAGVIWINCYFAFDNDCPYGGYKSSGFGRDLGKQGLDQYLQVKAVVTPVYDSPWL 501
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A288W8F8 ((ALDH12 {ECO:0000313|EMBL:ARU08110.1}))
HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 381/496 (76.81%), Postives = 434/496 (87.50%), Query Frame = 0
Match: A0A288W8F8 ((ALDH12 {ECO:0000313|EMBL:ARU08110.1}))
HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 381/496 (76.81%), Postives = 434/496 (87.50%), Query Frame = 0
Query: 6 NGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
NG +P+IKFTKLFING FV S+SGKTFETIDPR EVIAE++EG KEDVDLAVKAAR+AFD+GPWPR G++RR+IMMK ADLIDENT+ELA LD IDAGKL++L K +DIPGAAET RYYAGAADKIHG+TLKMST Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SHMD+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SR+FVQEGIY++FL KL++K K+WVVGDPFDP S QGPQ++KKQYD+ILSYIEHGK+EGA L GGKP KGYYIEPTIFTDV D+M IAKEEIFGPVMS+ KFKT EE IKRANAT YGL AGV+TNN+N ANTV+RSIRAG+IWINCY+ FDRD+P+GGYKMSG+GRDMGM+GL+KYL VK VATPIYN+PWL
Sbjct: 8 NGSSDSHVKVPQIKFTKLFINGEFVDSVSGKTFETIDPRNGEVIAEIAEGGKEDVDLAVKAAREAFDHGPWPRLPGSERRKIMMKFADLIDENTQELATLDAIDAGKLFYLCKIMDIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHMDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRIFVQEGIYDKFLIKLKQKVKNWVVGDPFDPTSHQGPQVDKKQYDRILSYIEHGKKEGATLFHGGKPCDGKGYYIEPTIFTDVTDEMTIAKEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNNINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLAVKAVATPIYNSPWL 503
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3A2 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027072789.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 384/505 (76.04%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A6P6T3A2 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027072789.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 384/505 (76.04%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIEHGK+EGA L GGKP KGYYIEPTIFTDV D+M IA+EEIFGPVMS+ KFKT EE IKRANAT YGL AGV+TNN+N ANTV+RSIRAG+IWINCY+ FDRD+P+GGYKMSG+GRDMGM+GL+KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSHVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGGKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFFLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIEHGKKEGATLFHGGKPCDRKGYYIEPTIFTDVTDEMKIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNNINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DTC8 ((Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS41000.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 375/497 (75.45%), Postives = 434/497 (87.32%), Query Frame = 0
Match: A0A7J0DTC8 ((Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS41000.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 375/497 (75.45%), Postives = 434/497 (87.32%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYN 497
M ESNG L IPEIKFTKLFING FV S+SGKTFETIDPRT EVIA+++EG KEDVDLAVKAAR+AFD GPWPR G+ R +IMMK A+LIDEN EELA LD IDAGKL+ GK +DIPGAAET RY+AGAA KIHG+TLKMS+++Q YTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+P+GV+NV+ G+GP AGAA++SHMD+DKV FTGST VGRLVMQAAA+SNLK V+LELGGKSP+IIFDDA +DKA LAL+G L+NKGE+C A SRVFVQEGIY++F+KKL EK K+WVVGDPFDP +QGPQ++KKQ+D+IL+YIEHGKREGA LLTGGKP G KGYYIEPTIFTDVKDDM+IAKEEIFGPVMS++KFKT EE IKRANAT YGL AG++T+NLN ANTVSRSIRAG IWINCY+ FD D PFGGYK SG+GRD+G +GL++YL VK V TP ++
Sbjct: 1 MGAESNGSLKCLSEIPEIKFTKLFINGKFVDSISGKTFETIDPRTGEVIAKIAEGDKEDVDLAVKAAREAFDCGPWPRLPGSARGKIMMKFAELIDENAEELATLDCIDAGKLFDWGKKVDIPGAAETLRYFAGAAGKIHGETLKMSSEHQGYTLREPIGVVGHIIPWNFPSTMFLMKVSPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPNGVINVITGFGPTAGAAISSHMDIDKVSFTGSTEVGRLVMQAAAMSNLKPVSLELGGKSPLIIFDDANIDKATDLALLGILFNKGEICVAGSRVFVQEGIYDEFVKKLTEKAKTWVVGDPFDPKVRQGPQVDKKQFDRILTYIEHGKREGATLLTGGKPCGHKGYYIEPTIFTDVKDDMVIAKEEIFGPVMSLMKFKTVEEAIKRANATKYGLAAGILTDNLNIANTVSRSIRAGVIWINCYFAFDNDCPFGGYKSSGFGRDLGKQGLDQYLQVKAVVTPTFD 497
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H1G5 ((Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345.1}) (1.2.1.5 {ECO:0000313|EMBL:PIN11345.1}))
HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0
Identity = 381/496 (76.81%), Postives = 429/496 (86.49%), Query Frame = 0
Match: A0A2G9H1G5 ((Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345.1}) (1.2.1.5 {ECO:0000313|EMBL:PIN11345.1}))
HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0
Identity = 381/496 (76.81%), Postives = 429/496 (86.49%), Query Frame = 0
Query: 6 NGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
NG + +P+IKFTKLFING FV S+SG TFETIDPRTEEVIA ++EG KEDVDLAV+AAR+AFD+GPWPR G +RRRIM+K ADLIDEN EELAALDT+DAGKL+ LGK +++P AAET RYYAGAADKIHG TLKMS + Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCT++VKPAEQTPLSAL+YAHLAKLAG+P+GV+NVV GYG AGAA++SHMD+DKV FTGST VGRL+MQAAA SNLK VTLELGGKSPIIIF+DA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL EK KSWVVGDPFDPN QGPQ +KKQYDKILS+IE GK+EGA LLTGGK KGYYIEPTIFTDV DDM IAKEEIFGPVMS+LKFKT EEVIKRANAT YGL AGV+TN+LN ANTVSRSIRAG IWINCY+ FD+D P+GGYKMSG+GRD GME L YL VK+VA PIYN+PWL
Sbjct: 5 NGSEKPQISVPKIKFTKLFINGQFVDSISGNTFETIDPRTEEVIANIAEGDKEDVDLAVRAAREAFDSGPWPRLPGCERRRIMLKFADLIDENVEELAALDTLDAGKLHILGKTLEVPSAAETIRYYAGAADKIHGSTLKMSRELQGYTLREPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTVVVKPAEQTPLSALYYAHLAKLAGIPNGVLNVVTGYGHTAGAAISSHMDIDKVSFTGSTEVGRLIMQAAATSNLKPVTLELGGKSPIIIFNDADVDKVADLALQGTLFNKGEICVAGSRVFVQEGIYDKFLAKLSEKVKSWVVGDPFDPNVHQGPQADKKQYDKILSFIELGKKEGATLLTGGKACDMKGYYIEPTIFTDVADDMTIAKEEIFGPVMSVLKFKTVEEVIKRANATKYGLAAGVMTNDLNIANTVSRSIRAGVIWINCYFAFDKDLPYGGYKMSGFGRDSGMESLNSYLQVKSVAMPIYNSPWL 500
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SG73 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027065155.1}))
HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 383/505 (75.84%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A6P6SG73 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027065155.1}))
HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 383/505 (75.84%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG+KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EPVGVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIE GK+EGA L GGKP KGYYIEPTIFTDV D+M IA+EEIFGPVMS+ KFKT EE IKRANAT YGL AGV+TN++N ANTV+RSIRAG+IWINCY+ FDRD+P+GGYKMSG+GRDMGM+GL+KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSRVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGNKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFSLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPVGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIELGKKEGATLFHGGKPGDRKGYYIEPTIFTDVTDEMTIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNDINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U6V3 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 383/505 (75.84%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A068U6V3 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 383/505 (75.84%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG+KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EPVGVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIE GK+EGA L GGKP KGYYIEPTIFTDV D+M IA+EEIFGPVMS+ KFKT EE IKRANAT YGL AGV+TN++N ANTV+RSIRAG+IWINCY+ FDRD+P+GGYKMSG+GRDMGM+GL+KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSRVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGNKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFFLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPVGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIELGKKEGATLFHGGKPGDRKGYYIEPTIFTDVTDEMTIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNDINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022Q963 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 377/499 (75.55%), Postives = 433/499 (86.77%), Query Frame = 0
Match: A0A022Q963 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 377/499 (75.55%), Postives = 433/499 (86.77%), Query Frame = 0
Query: 4 ESNGKLTVKEM-IPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
E NGK + IP+IKFT+LFING FV S+SGK FETIDPRT EVIA+++EG K+DVDLAV AAR+AFD+GPWPR G++RR+I++K ADLI+EN ELA LD ID GKL+ + K DIPGAAET RY+AGAADKIHG TLKMS + YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV GYG AGAA++SHMDVDK+ FTGST VGRLVMQAAA SNLK V LELGGKSP I+FDD ++DK HLALIG L+NKGE+C A SRVFVQEGIY++FL KL EK K+WVVGDPFDPN+ QGPQ++KKQY++ILSYIEHGK+EGA LLTGGKPLG KGYYIEPTIFTDV+DDM IAKEEIFGPVMS++KFKT EEVIKRANAT YGL AGV+TNNLN ANTVSRSIRAG IW+NCY+ FDRD P+GGYKMSG+GRDMGME L+ YL VK+VA PI+++PWL
Sbjct: 3 EQNGKHEEYLLNIPKIKFTQLFINGDFVDSISGKKFETIDPRTGEVIAKIAEGDKQDVDLAVNAAREAFDHGPWPRLPGSERRKILLKFADLIEENINELAGLDAIDGGKLFSMAKMGDIPGAAETIRYFAGAADKIHGSTLKMSRELHGYTLREPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGYGHSAGAAISSHMDVDKISFTGSTEVGRLVMQAAAASNLKPVCLELGGKSPFIVFDDVDVDKIAHLALIGTLFNKGEICVAGSRVFVQEGIYDEFLVKLLEKVKTWVVGDPFDPNTHQGPQVDKKQYERILSYIEHGKKEGATLLTGGKPLGGKGYYIEPTIFTDVEDDMTIAKEEIFGPVMSVMKFKTVEEVIKRANATKYGLAAGVMTNNLNIANTVSRSIRAGVIWVNCYFAFDRDLPYGGYKMSGFGRDMGMESLDAYLQVKSVAMPIHDSPWL 501
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AC89 ((Putative aldehyde dehydrogenase family 2 member C4 {ECO:0000313|EMBL:MPA53508.1}) (1.2.1.68 {ECO:0000313|EMBL:MPA53508.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 376/501 (75.05%), Postives = 433/501 (86.43%), Query Frame = 0
Match: A0A5B7AC89 ((Putative aldehyde dehydrogenase family 2 member C4 {ECO:0000313|EMBL:MPA53508.1}) (1.2.1.68 {ECO:0000313|EMBL:MPA53508.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 376/501 (75.05%), Postives = 433/501 (86.43%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M +SNG IP+IKFTKLFING FV S+SGKTFETIDPRT + IA V+EG KEDVDLAV+AAR+AFD+GPWPR SG R RIMMK ADLIDEN EELAALDTIDAGKL+ GKA+DIP AA RYYAGAADKIHG TLKMS++ QAYTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+ AHLAKLAG+PDGV+NV+ GYG AGAA++SHMD+D V FTGST VGR+VMQAAA SNLK V+LELGGKSP+IIFDDA+++KA LAL+G YNKGE+CAASSRVFVQEGIY+ F+K L EK K+WVVGDPFDP QGPQ +KKQ++KILSYIEHGKREGA LL+GGK GEKGYYI+PTIFTDV D+M+IAK+EIFGPVMS++KFKT +EVIKRAN T YGL AG++TN+LN ANTVSRSIRAG IWINCY+ FD+D P+GGYKMSG+GRD+G+E L+KYL VK+V TPIYN+PWL
Sbjct: 1 MAVQSNGSSEYLNKIPQIKFTKLFINGEFVDSISGKTFETIDPRTGDAIARVAEGDKEDVDLAVEAARNAFDHGPWPRLSGTARGRIMMKFADLIDENVEELAALDTIDAGKLFSWGKAMDIPLAAAILRYYAGAADKIHGATLKMSSELQAYTLREPIGVVGHIIPWNFPSSMFFMKVSPALAAGCTMVVKPAEQTPLSALYNAHLAKLAGIPDGVINVITGYGSTAGAAISSHMDIDMVSFTGSTEVGRIVMQAAATSNLKTVSLELGGKSPLIIFDDADVNKAADLALLGIRYNKGEICAASSRVFVQEGIYDVFVKLLAEKAKTWVVGDPFDPTVHQGPQTDKKQFEKILSYIEHGKREGATLLSGGKACGEKGYYIKPTIFTDVMDNMLIAKDEIFGPVMSLMKFKTIDEVIKRANGTRYGLAAGIVTNDLNVANTVSRSIRAGVIWINCYFAFDKDCPYGGYKMSGFGRDLGLEALDKYLQVKSVVTPIYNSPWL 501
BLAST of DCAR_012079 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UAY7 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 803.127 bits (2073), Expect = 0.000e+0
Identity = 375/501 (74.85%), Postives = 433/501 (86.43%), Query Frame = 0
Match: A0A2C9UAY7 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 803.127 bits (2073), Expect = 0.000e+0
Identity = 375/501 (74.85%), Postives = 433/501 (86.43%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKEEIFGPVMSILKFKTTEEVIKRANATTYGLVAGVITNNLNTANTVSRSIRAGSIWINCYYVFDRDTPFGGYKMSGYGRDMGMEGLEKYLHVKTVATPIYNTPWL 501
M G +NG IP IKFTKLFING F+ S+SGKTFETIDPRT +VIA ++EG KEDVDLAVKAAR+AFD+GPWPR SGA R RIMMK ADLID+N EELAALDTIDAGKLY GKA+DIP AA RYYAGAADKIHG+ LKMS + Q YTL EP+GVVGHIIPWNFP+ +F KV+PALAAGCTM+VKPAEQTPLSALFYAHLAKLAG+PDGV+NVV GYGP AGAA+ SHMD+DKV FTGST VGR VM+AAA SNLKQV+LELGGKSP++IFDDA+++ A LAL+G LYNKGE+CAASSRV+VQEGIY++ ++KL EK K+WVVGDPFDPN +QGPQ++K+Q++KILSYIEHGKREGA LLTGGKPL EKGY+IEPTIFTDVK+DM+IAK+EIFGPVMS++KFKT EE I+ AN T YGL AG++T +LN ANT+SRSIRAG IWINCY+ FDRD P+GGYKMSG+GR GME L KYL VK+V TPIYN+PWL
Sbjct: 13 MAGLTNGSSHFHINIPTIKFTKLFINGEFLDSVSGKTFETIDPRTGDVIARIAEGDKEDVDLAVKAAREAFDHGPWPRMSGAARARIMMKYADLIDQNIEELAALDTIDAGKLYGWGKAVDIPSAANHLRYYAGAADKIHGEVLKMSRELQGYTLREPIGVVGHIIPWNFPSSLFFSKVSPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGIPDGVINVVTGYGPTAGAAIASHMDIDKVSFTGSTEVGRSVMKAAATSNLKQVSLELGGKSPLLIFDDADINTAADLALLGILYNKGEICAASSRVYVQEGIYDELVQKLVEKAKAWVVGDPFDPNVRQGPQVDKQQHEKILSYIEHGKREGATLLTGGKPLFEKGYFIEPTIFTDVKEDMLIAKDEIFGPVMSLMKFKTVEEAIESANNTRYGLAAGIVTKDLNVANTISRSIRAGIIWINCYFAFDRDCPYGGYKMSGFGRGYGMEALHKYLQVKSVVTPIYNSPWL 513
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6R4F0 | E-Value: 0.000e+0, PID: 75.65 | (Aldehyde dehydrogenase family 2 member like {ECO:... [more] |
| A0A288W8F8 | E-Value: 0.000e+0, PID: 76.81 | (ALDH12 {ECO:0000313|EMBL:ARU08110.1})[more] |
| A0A6P6T3A2 | E-Value: 0.000e+0, PID: 76.04 | (aldehyde dehydrogenase family 2 member C4-like {E... [more] |
| A0A7J0DTC8 | E-Value: 0.000e+0, PID: 75.45 | (Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS4... [more] |
| A0A2G9H1G5 | E-Value: 0.000e+0, PID: 76.81 | (Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345... [more] |
| A0A6P6SG73 | E-Value: 0.000e+0, PID: 75.84 | (aldehyde dehydrogenase family 2 member C4-like {E... [more] |
| A0A068U6V3 | E-Value: 0.000e+0, PID: 75.84 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A022Q963 | E-Value: 0.000e+0, PID: 75.55 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A5B7AC89 | E-Value: 0.000e+0, PID: 75.05 | (Putative aldehyde dehydrogenase family 2 member C... [more] |
| A0A2C9UAY7 | E-Value: 0.000e+0, PID: 74.85 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |