DCAR_011713 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_011713

Identifier:

DCAR_011713.mRNA-protein

Sequence:

MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAE
KDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDL
FYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQ
IEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDL
TDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNS
NWHPFKQVFKDEKLQVYMQMATCEHYEECCKARALVVQFAREIDYKNEKL
FEMERRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSL
LEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREK
LIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYA
PGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLN
PRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAH
WHPFKRVTIDGKLQTSSRWN*

Sequence Length:

571

Sequence Checksum:

4bec128954a14375d1b25dd98d990787

View location in JBrowse:

DCARv2_Chr3:39521464..39531468+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_011713, derives from mRNA, DCAR_011713.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I3H6 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 321.627 bits (823), Expect = 6.322e-104
Identity = 157/266 (59.02%), Postives = 221/266 (83.08%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQV 266
            ME +++EEL++AR LV+SLAK+VD KNQ+LWE+E K +E ST LGRM++EKDKLH++FAEEMRKM+FI  ++E+LK+E EC+++ +    +ENEKL QDL ++++ELEQQ  +L+K++A+ ++E K  LAEKEKLK+Q  +E DY++  QI+ L  ELAEK ++++DME LNQTLI++EHMSN +LQEARK+L+NVLPD+ D++ +G+KRMGEV+QKPFQD CLQ+FS E+ E+++ME SSLWQ KV +S+W PF+Q+ KD KLQV
Sbjct:    1 MENEVIEELRRARSLVMSLAKDVDVKNQRLWEMECKCDETSTTLGRMISEKDKLHQAFAEEMRKMEFIGLQNEKLKHELECQMRNMHFMRLENEKLKQDLVHQRQELEQQTKDLEKQKAQVDLEHKNLLAEKEKLKTQNLIEDDYSLNVQIDALKEELAEKVDDMHDMETLNQTLILREHMSNVELQEARKKLINVLPDVLDTTTIGIKRMGEVDQKPFQDVCLQRFSDEDWEVKSMEQSSLWQEKVKDSSWQPFRQMTKDGKLQV 266

HSP 2 Score: 124.79 bits (312), Expect = 2.428e-29
Identity = 101/306 (33.01%), Postives = 168/306 (54.90%), Query Frame = 0

Query:  274 EHYEECCKARALVVQFAREIDYKNEKLFEME-----------RRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSL-INREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQTSS 567
            E  EE  +AR+LV+  A+++D KN++L+EME           R + E++K  QA+ EE      KME +  + EKL   LE  Q +++     +  +NEKLK +   Q++       +L++Q  DL  QK+ + +  + L+ E+E     ++K     ED     D S+  +   +++    + DD +                 E+LN+TL+++E MSN ELQ+AR ++I  L  +L+  ++  IKRMGEV++K FQ++C Q  + EDWE +S    SLW+ +V+D+ W PF+++T DGKLQ  +
Sbjct:    4 EVIEELRRARSLVMSLAKDVDVKNQRLWEMECKCDETSTTLGRMISEKDKLHQAFAEEMR----KMEFIGLQNEKLKHELE-CQMRNM---HFMRLENEKLKQDLVHQRQ-------ELEQQTKDLEKQKAQVDLEHKNLLAEKE-----KLKTQNLIED-----DYSLNVQIDALKEELAEKVDDMHD---------------METLNQTLILREHMSNVELQEARKKLINVLPDVLDTTTI-GIKRMGEVDQKPFQDVCLQRFSDEDWEVKSMEQSSLWQEKVKDSSWQPFRQMTKDGKLQVGT 268

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BC66 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 311.997 bits (798), Expect = 2.002e-99
Identity = 155/265 (58.49%), Postives = 210/265 (79.25%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            M+ +++ E ++AR LVVSLAKEVD KNQ+LWE+ER  +E S  L RM+AEKD+LH+++ +EMRKMQFI  ++E+LK + EC+++K+   G+ENEKL  +L  ++KELEQ+  EL+KREAE  +ERK  L EKEKLK+Q P+E DY +T Q++DL  +LAEK +EL+DME LNQTLI++E MSN +LQEARKEL+NV+ D+ D + VGVKRMGEV+QKPFQDACL K+S E+ E+R+MEL S WQ  V++ +WHPFK+  +D KLQ
Sbjct:    1 MDNEVLNEFQKARSLVVSLAKEVDVKNQRLWEMERNCSETSATLDRMIAEKDRLHQAYVDEMRKMQFIGLQNEKLKCKLECQMEKMHFIGLENEKLKNELESQRKELEQRAKELEKREAENNLERKNLLVEKEKLKAQNPVESDYGLTIQMDDLREDLAEKVDELHDMETLNQTLILRERMSNHELQEARKELINVVRDVLDGATVGVKRMGEVDQKPFQDACLHKYSSEDWEVRSMELCSFWQENVSDPSWHPFKKTIEDGKLQ 265

HSP 2 Score: 127.102 bits (318), Expect = 1.159e-29
Identity = 101/297 (34.01%), Postives = 152/297 (51.18%), Query Frame = 0

Query:  281 KARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKD-------KMELLKKEVEKLVKVLEETQYKSLLEQKKLLA-KNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPG-----KDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            KAR+LVV  A+E+D KN++L+EMER   E          E +RL         KM+ +  + EKL   LE       +E+   +  +NEKLK E ESQ+K                                   +L +R K L++ E    L+  +++ +++K++  +   SD           +D  EK+  EL   E+LN+TL+++E MSN ELQ+AR E+I  +  +L+  +V  +KRMGEV++K FQ+ C    ++EDWE +S  LCS W+  V D  WHPFK+   DGKLQ
Sbjct:   11 KARSLVVSLAKEVDVKNQRLWEMERNCSETSATLDRMIAEKDRLHQAYVDEMRKMQFIGLQNEKLKCKLE-----CQMEKMHFIGLENEKLKNELESQRK-----------------------------------ELEQRAKELEKREAENNLERKNLLVEKEKLKAQNPVESDYGLTIQMDDLREDLAEKV-DELHDMETLNQTLILRERMSNHELQEARKELINVVRDVLDGATV-GVKRMGEVDQKPFQDACLHKYSSEDWEVRSMELCSFWQENVSDPSWHPFKKTIEDGKLQ 265

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BJR6 ((Putative domain XH {ECO:0000313|EMBL:MPA69152.1}) (Fragment))

HSP 1 Score: 314.309 bits (804), Expect = 2.427e-99
Identity = 155/265 (58.49%), Postives = 209/265 (78.87%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            M  ++++E ++AR LVVSLAKEVD KNQ+LWE+ERK +E S  LGRM+AEKD++H+++ EEMRKMQFI  ++E+L Y+ EC++KK+   G +NEKL  +L  ++KE+EQ+  EL+KREA+  +ERK  L EKEKLK+Q P+  DY++ FQI+ L   LAEK +ELNDME L+QTLI++E MSN +LQEARKEL+NVLPD+ D + VGVKRMGEV+QKPFQDACL K+S E+ E+R++EL S WQ  V + +WHPFK+  +D KLQ
Sbjct:   74 MNDEVLKEFQKARSLVVSLAKEVDVKNQRLWEMERKCDETSATLGRMIAEKDRMHQAYVEEMRKMQFIGLQNEKLNYQLECQMKKMHFIGQQNEKLKNELESQRKEVEQRAKELEKREAQNNLERKDLLVEKEKLKAQNPVGSDYSLIFQIDALRENLAEKVDELNDMETLSQTLILRERMSNHELQEARKELINVLPDVLDGATVGVKRMGEVDQKPFQDACLHKYSNEDWEVRSVELCSFWQQNVGDPSWHPFKKTIEDGKLQ 338

HSP 2 Score: 131.339 bits (329), Expect = 1.179e-30
Identity = 103/304 (33.88%), Postives = 159/304 (52.30%), Query Frame = 0

Query:  267 YMQMATCEHYEECCKARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKK---LCGRLDADLKEQGYDLMVQKSSLINREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTY---APGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            Y+     E  +E  KAR+LVV  A+E+D KN++L+EMER+ DE          E +R+           +  V+ + + Q+  L        +NEKL Y+ E Q K     G+ +  LK +   L  Q+  +  R K + +RE Q N               KD  + +++ K ++P  +     +   A  ++  EK+  EL   E+L++TL+++E MSN ELQ+AR E+I  L  +L+  +V  +KRMGEV++K FQ+ C    + EDWE +S  LCS W++ V D  WHPFK+   DGKLQ
Sbjct:   70 YLVQMNDEVLKEFQKARSLVVSLAKEVDVKNQRLWEMERKCDETSATLGRMIAEKDRMH----------QAYVEEMRKMQFIGL--------QNEKLNYQLECQMKKMHFIGQQNEKLKNE---LESQRKEVEQRAKELEKREAQNNLE------------RKDLLVEKEKLKAQNPVGSDYSLIFQIDALRENLAEKV-DELNDMETLSQTLILRERMSNHELQEARKELINVLPDVLDGATV-GVKRMGEVDQKPFQDACLHKYSNEDWEVRSVELCSFWQQNVGDPSWHPFKKTIEDGKLQ 338

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I3S3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5959579.1}))

HSP 1 Score: 321.242 bits (822), Expect = 4.024e-96
Identity = 157/266 (59.02%), Postives = 221/266 (83.08%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQV 266
            ME +++EEL++AR LV+SLAK+VD KNQ+LWE+E K +E ST LGRM++EKDKLH++FAEEMRKM+FI  ++E+LK+E EC+++ +    +ENEKL QDL ++++ELEQQ  +L+K++A+ ++E K  LAEKEKLK+Q  +E DY++  QI+ L  ELAEK ++++DME LNQTLI++EHMSN +LQEARK+L+NVLPD+ D++ +G+KRMGEV+QKPFQD CLQ+FS E+ E+++ME SSLWQ KV +S+W PF+Q+ KD KLQV
Sbjct:  608 MENEVIEELRRARSLVMSLAKDVDVKNQRLWEMECKCDETSTTLGRMISEKDKLHQAFAEEMRKMEFIGLQNEKLKHELECQMRNMHFMRLENEKLKQDLVHQRQELEQQTKDLEKQKAQVDLEHKNLLAEKEKLKTQNLIEDDYSLNVQIDALKEELAEKVDDMHDMETLNQTLILREHMSNVELQEARKKLINVLPDVLDTTTIGIKRMGEVDQKPFQDVCLQRFSDEDWEVKSMEQSSLWQEKVKDSSWQPFRQMTKDGKLQV 873

HSP 2 Score: 236.113 bits (601), Expect = 5.975e-65
Identity = 215/673 (31.95%), Postives = 346/673 (51.41%), Query Frame = 0

Query:    5 LVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQF--------IEQKSEQLKYESECKIKKIQSNGVENEK-------------------LIQDLFYKQKELEQQKSE---------------------------LDKREA-EFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQV-----------FKDEKL---------QVY--MQMATCE---------H------------YEECCKARALVVQFAREIDYKNEKLFEME-----------RRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSL-INREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQTSS 567
            + EE ++  +LV +L   ++ KN+ L E+E KF+E S +L +++ EKD+LH+S+ EE++K+Q         I    E+LK + E +  +++  G E EK                    I++   +   +EQQK++                           LD ++A E E+E+   L     + + +  +GD  +  ++E +   L EK  + +D+E LNQTLI+KE +SND+LQEARKEL+N L ++     +GVKRMGE++ KPF +A  +K+S  EAE RAMEL SLW   + +  WHPFK V            +DEKL         +VY  + MA  E         H             EE  +AR+LV+  A+++D KN++L+EME           R + E++K  QA+ EE      KME +  + EKL   L E Q +++     +  +NEKLK +   Q++       +L++Q  DL  QK+ + +  + L+ E+E     ++K     ED     D S+  +   +++    + DD +                 E+LN+TL+++E MSN ELQ+AR ++I  L  +L+  ++  IKRMGEV++K FQ++C Q  + EDWE +S    SLW+ +V+D+ W PF+++T DGKLQ  +
Sbjct:  247 MAEEAQKTSKLVSNLTNLIEVKNRNLVEMESKFSETSNSLNKLMEEKDRLHQSYNEEIKKIQLSAREHFQKIFNDHEKLKLQLESQKGELELRGKELEKRDVQSENERRKLSEEIEKNAIKNSSLQMAAMEQQKADENVLKLAEDQKRQKEDLHTRIIQLEKQLDAKQALELEIEQ---LRGTLNVMNHMVDDGDLEVLKKVEGMHKMLREKEGDFDDLEALNQTLIVKERLSNDELQEARKELINGLKEMPKIDNIGVKRMGELDNKPFHEAMKRKYSAAEAEERAMELCSLWDEYLRDPEWHPFKVVTVNGKSQGVIDTEDEKLKGLKNEFGEEVYDALTMALTEINEYNPSGRHLQFFQLKMENEVIEELRRARSLVMSLAKDVDVKNQRLWEMECKCDETSTTLGRMISEKDKLHQAFAEEMR----KMEFIGLQNEKLKHEL-ECQMRNM---HFMRLENEKLKQDLVHQRQ-------ELEQQTKDLEKQKAQVDLEHKNLLAEKE-----KLKTQNLIED-----DYSLNVQIDALKEELAEKVDDMHD---------------METLNQTLILREHMSNVELQEARKKLINVLPDVLDTTTI-GIKRMGEVDQKPFQDVCLQRFSDEDWEVKSMEQSSLWQEKVKDSSWQPFRQMTKDGKLQVGT 875

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RTE5 ((Factor of DNA methylation like {ECO:0000313|EMBL:PSS33302.1}))

HSP 1 Score: 301.212 bits (770), Expect = 2.542e-95
Identity = 152/274 (55.47%), Postives = 213/274 (77.74%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEG-DYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQVYMQMATC 273
            ME +++EEL++ARRL +SLAKEVD KN +LWE+ERK +E    LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I    ++NEKL  DL  +++ELEQQ  EL+K +A+ ++E++  L EKEKLK+Q   EG DY++  QI+ L  ELAEK ++LNDME LNQTLI++EHMSN +LQ+ARKEL++VLP++ D++ +GVKRMGEV+QKPFQD C Q+FS E+ E+R++E SSLWQ  V + +W PF+++ KD KLQ  +    C
Sbjct:    1 MENEILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHFMRLQNEKLKDDLLNQRQELEQQAKELEKHKAKVDLEKQNLLVEKEKLKAQNLFEGDDYSLNIQIDALKEELAEKADDLNDMENLNQTLILREHMSNVELQDARKELISVLPNVLDTTTIGVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQEIIDEDDC 274

HSP 2 Score: 121.324 bits (303), Expect = 1.289e-27
Identity = 98/299 (32.78%), Postives = 160/299 (53.51%), Query Frame = 0

Query:  274 EHYEECCKARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKD-------KMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSL-INREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            E  EE  +AR L +  A+E+D KN +L+EMER+ DE          E +RL         KME +  + EKL K+  E Q +++     +  +NEKLK +  +Q++       +L++Q  +L   K+ + + ++ L+ E+E     + + L E +D  +      +++E         ++DD               L   E+LN+TL+++E MSN ELQDAR E+I  L  +L+  ++  +KRMGEV++K FQ++C Q  + EDWE +S    SLW+  V+D  W PF+++  DGKLQ
Sbjct:    4 EILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKL-KLELECQMRNI---HFMRLQNEKLKDDLLNQRQ-------ELEQQAKELEKHKAKVDLEKQNLLVEKE---KLKAQNLFEGDDYSLNIQIDALKEE------LAEKADD---------------LNDMENLNQTLILREHMSNVELQDARKELISVLPNVLDTTTI-GVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQ 266

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PLB5 ((Factor of DNA methylation like {ECO:0000313|EMBL:PSR93113.1}))

HSP 1 Score: 301.212 bits (770), Expect = 3.399e-95
Identity = 150/266 (56.39%), Postives = 211/266 (79.32%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGD-YNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            ME +++EEL++ARRL +SLAKEVD KN +LWE+ERK +E S  LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I S  ++NEKL  DL  ++ ELEQQ  EL+K+ A+ ++E++    EKEKLK+Q   EGD Y++  +I+ L  ELAEK ++LNDME LN+TLI++EHMSN +LQ+ARKEL+NVLP++ D++ +GVKRMGEV+QKPFQD C Q+F+ E+ E+R++E SSLWQ  V + +W PF+++ KD KLQ
Sbjct:    1 MENEILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDEMSATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHSMRLQNEKLKDDLLSQRLELEQQAKELEKQNAKVDLEKQNLHVEKEKLKAQNLFEGDNYSLNIKIDVLKEELAEKVDDLNDMETLNRTLILREHMSNVELQDARKELINVLPNVLDTTTIGVKRMGEVDQKPFQDVCSQRFTGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQ 266

HSP 2 Score: 127.102 bits (318), Expect = 1.170e-29
Identity = 104/304 (34.21%), Postives = 160/304 (52.63%), Query Frame = 0

Query:  274 EHYEECCKARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKD-------KMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSL-INREKL----IFERE-CQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            E  EE  +AR L +  A+E+D KN +L+EMER+ DE          E +RL         KME +  + EKL K+  E Q +++     +  +NEKLK +  SQ+    +   +L++Q   + ++K +L + +EKL    +FE +   LN +I +L+E                +KV+D                       L   E+LN+TL+++E MSN ELQDAR E+I  L  +L+  ++  +KRMGEV++K FQ++C Q  T EDWE +S    SLW+  V+D  W PF+++  DGKLQ
Sbjct:    4 EILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDEMSATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKL-KLELECQMRNI---HSMRLQNEKLKDDLLSQRLELEQQAKELEKQNAKVDLEKQNLHVEKEKLKAQNLFEGDNYSLNIKIDVLKEE-------------LAEKVDD-----------------------LNDMETLNRTLILREHMSNVELQDARKELINVLPNVLDTTTI-GVKRMGEVDQKPFQDVCSQRFTGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQ 266

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DKC6 ((XH/XS domain-containing protein {ECO:0000313|EMBL:GFS37039.1}))

HSP 1 Score: 298.13 bits (762), Expect = 5.215e-94
Identity = 151/274 (55.11%), Postives = 212/274 (77.37%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEG-DYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQVYMQMATC 273
            ME +++EEL++ARRL  SLAKEVD KN +LWE+ERK +E    LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I    ++NEKL  DL  +++ELEQQ  EL+K +A+ ++E++  L EKEKLK+Q   EG DY++  QI+ L  ELAEK ++LNDME LNQTLI++EHMSN +LQ+ARKEL++VLP++ D++ +GVKRMGEV+QKPFQD C Q+FS E+ E+R++E SSLWQ  V + +W PF+++ KD KL+  +    C
Sbjct:    1 MENEILEELQRARRLAKSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHFMRLQNEKLKDDLLNQRQELEQQAKELEKHKAKVDLEKQNLLVEKEKLKAQNLFEGDDYSLNIQIDALKEELAEKADDLNDMENLNQTLILREHMSNVELQDARKELISVLPNVFDTTTIGVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLREIIDEDDC 274

HSP 2 Score: 116.316 bits (290), Expect = 6.259e-26
Identity = 97/303 (32.01%), Postives = 162/303 (53.47%), Query Frame = 0

Query:  274 EHYEECCKARALVVQFAREIDYKNEKLFEMERRMDE-----------REKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSL-INREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            E  EE  +AR L    A+E+D KN +L+EMER+ DE           +++  QA+ EE      KME +  + EKL K+  E Q +++     +  +NEKLK +  +Q++       +L++Q  +L   K+ + + ++ L+ E+E     + + L E +D  +      +++E         ++DD               L   E+LN+TL+++E MSN ELQDAR E+I  L  + +  ++  +KRMGEV++K FQ++C Q  + EDWE +S    SLW+  V+D  W PF+++  DGKL+
Sbjct:    4 EILEELQRARRLAKSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMR----KMEFIGLQNEKL-KLELECQMRNI---HFMRLQNEKLKDDLLNQRQ-------ELEQQAKELEKHKAKVDLEKQNLLVEKE---KLKAQNLFEGDDYSLNIQIDALKEE------LAEKADD---------------LNDMENLNQTLILREHMSNVELQDARKELISVLPNVFDTTTI-GVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLR 266

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LVZ7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7149038.1}))

HSP 1 Score: 294.278 bits (752), Expect = 2.597e-91
Identity = 155/298 (52.01%), Postives = 208/298 (69.80%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAE---------------------------------EMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            ME ++VEEL++ R L +SLAKEVD KNQ+LWELERK++E S  LGRM+AEKD+LH++FA+                                 EMRKM+FI  ++E+LK E EC+++ +    ++NEKL  DL  + +ELEQQ  EL+K+  + ++ERK  LAEKEKLK Q   E DY++  Q++ L  ELAEK ++L+DME LNQTLI++EHMSN +LQ+ARKEL+NVLP++ D   +GVKRMGEV+QKPFQD CLQ+FS E+ E+RA+E SSLWQ KV +  W PFK++ KD KLQ
Sbjct:   59 MENEIVEELRRTRTLAMSLAKEVDVKNQRLWELERKYDETSATLGRMIAEKDRLHQAFADGISCSLQMLEMFLLYHRAGYRSYFPSLTYQVLAEMRKMEFIGVQNEKLKLELECQMRNMHFMRLQNEKLKDDLVNQSQELEQQAKELEKQRGKVDLERKNLLAEKEKLKDQNGFEDDYSLNIQLDALKEELAEKVDDLHDMETLNQTLILREHMSNVELQDARKELINVLPNVLDIVTIGVKRMGEVDQKPFQDVCLQRFSGEDWEVRAVEQSSLWQEKVKDPGWQPFKKMTKDGKLQ 356

HSP 2 Score: 122.865 bits (307), Expect = 1.270e-27
Identity = 101/310 (32.58%), Postives = 165/310 (53.23%), Query Frame = 0

Query:  274 EHYEECCKARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLK----DKMELLKKEVEKLV--------KVLEETQYKSLLEQKK---LLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPGKDA--EEKLRK--ELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            E  EE  + R L +  A+E+D KN++L+E+ER+ DE          E +RL     D +    + +E  +               Y+ L E +K   +  +NEKLK E E Q     R    ++ Q   L   K  L+N+ +       +L ++ K L++   +  L+  +++ +++K++D +    D +     DA  EE   K  +L   E+LN+TL+++E MSN ELQDAR E+I  L  +L+  ++  +KRMGEV++K FQ++C Q  + EDWE ++    SLW+ +V+D  W PFK++T DGKLQ
Sbjct:   62 EIVEELRRTRTLAMSLAKEVDVKNQRLWELERKYDETSATLGRMIAEKDRLHQAFADGISCSLQMLEMFLLYHRAGYRSYFPSLTYQVLAEMRKMEFIGVQNEKLKLELECQM----RNMHFMRLQNEKL---KDDLVNQSQ-------ELEQQAKELEKQRGKVDLERKNLLAEKEKLKDQNGFEDDYSLNIQLDALKEELAEKVDDLHDMETLNQTLILREHMSNVELQDARKELINVLPNVLDIVTI-GVKRMGEVDQKPFQDVCLQRFSGEDWEVRAVEQSSLWQEKVKDPGWQPFKKMTKDGKLQ 356

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LWQ5 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 288.5 bits (737), Expect = 3.330e-90
Identity = 146/262 (55.73%), Postives = 201/262 (76.72%), Query Frame = 0

Query:    5 LVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDS-SVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            +V EL++AR LVV+LA+EVD KNQ++WE+ER   E S+ L  M+AEKD+++ +F+EEMRKMQ I Q++ +LK E EC+I  +     E+EKL  ++  ++KELEQ+ +EL KRE++ + ER  F  EKEK+ +Q P E DY+M+  I  L   L EK EEL+DM+ LNQTLI++EHMSN++LQ ARKEL+NVLP + +S +++G+KRMGEV QKPFQD C+QKFS ++ E+R++ELSSLWQ KVNN NWHPFKQV +D K+Q
Sbjct:    6 MVSELRKARGLVVNLAREVDLKNQRIWEMERHNEEISSRLNSMIAEKDRMNHAFSEEMRKMQVIGQQNAKLKTELECQISSMHLLVQESEKLKDEVACQRKELEQKTNELQKRESQLDNERASFYIEKEKI-AQNPYESDYSMSVHINGLRDRLTEKEEELHDMDNLNQTLILREHMSNNELQAARKELINVLPQILESNTIIGLKRMGEVAQKPFQDVCMQKFSAQDWELRSVELSSLWQDKVNNPNWHPFKQVVRDGKMQ 266

HSP 2 Score: 132.109 bits (331), Expect = 2.315e-31
Identity = 100/290 (34.48%), Postives = 152/290 (52.41%), Query Frame = 0

Query:  281 KARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREKLIFERECQ---LNKRIKMLQETEDRQVLKDTSI-MRKEQKVEDP-SCNRSDDTYAPG-KDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            KAR LVV  ARE+D KN++++EMER  +E      +   E +R+                  EE +   ++ Q+     N KLK E E Q                 L+VQ+S     EKL  E  CQ   L ++   LQ+ E +   +  S  + KE+  ++P   + S   +  G +D   +  +EL   ++LN+TL+++E MSN ELQ AR E+I  L  +L   ++  +KRMGEV +K FQ++C Q  +A+DWE +S  L SLW+ +V + +WHPFK+V  DGK+Q
Sbjct:   12 KARGLVVNLAREVDLKNQRIWEMERHNEEISSRLNSMIAEKDRMNHAFS-------------EEMRKMQVIGQQ-----NAKLKTELECQIS------------SMHLLVQES-----EKLKDEVACQRKELEQKTNELQKRESQLDNERASFYIEKEKIAQNPYESDYSMSVHINGLRDRLTEKEEELHDMDNLNQTLILREHMSNNELQAARKELINVLPQILESNTIIGLKRMGEVAQKPFQDVCMQKFSAQDWELRSVELSSLWQDKVNNPNWHPFKQVVRDGKMQ 266

[Close]

BLAST of DCAR_011713 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JQY9 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 286.189 bits (731), Expect = 2.152e-89
Identity = 152/265 (57.36%), Postives = 205/265 (77.36%), Query Frame = 0

Query:    2 EKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPD-LTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQ 265
            E  LV EL++AR L V LA+EVD KNQ+LWE+ER   E S+ L  M+AEKD+++ SF+EEMRKMQ +  ++ +LK E EC++ K+     E+EKL +++ Y++KELE + +ELDKRE++ E+ERK F  EKEK+ +Q PL+ +Y M+  I DL  +LAEK EEL+DM++LNQTLI++EHMSN++LQ ARKEL+NVLP  L  +S++G+KRMGEV QKPFQD CLQ++S ++ EMR++ELSSLWQ KVN  NWHPFKQ  KD KLQ
Sbjct:    3 EGKLVSELRKARSLAVGLAREVDMKNQRLWEMERHSEEISSRLHSMIAEKDRMNHSFSEEMRKMQVLGSQNTKLKTELECQLSKMHVLFQESEKLKEEVAYQRKELELRANELDKRESQLEIERKSFYKEKEKI-AQNPLDSEYGMSVLINDLREKLAEKEEELHDMDILNQTLILREHMSNNELQAARKELINVLPQVLEGTSIIGLKRMGEVAQKPFQDVCLQRYSSQDWEMRSVELSSLWQDKVNTPNWHPFKQAVKDGKLQ 266

HSP 2 Score: 120.553 bits (301), Expect = 2.311e-27
Identity = 98/301 (32.56%), Postives = 151/301 (50.17%), Query Frame = 0

Query:  270 MATCEHYEECCKARALVVQFAREIDYKNEKLFEMERRMDEREKEFQAYKEENERLKDKMELLKKEVEKLVKVLEETQYKSLLEQKKLLAKNEKLKYEFESQKKLCGRLDADLKEQGYDLMVQKSSLINREKLIFERECQLNKRIKMLQETEDRQVLKDTSIMRKEQKVEDPSCNRSDDTYAPG------KDAEEKLRKELEYFESLNKTLMIKESMSNRELQDARNEVIEGLEGMLNPRSVFCIKRMGEVNRKVFQEICQQSCTAEDWEEQSATLCSLWERRVRDAHWHPFKRVTIDGKLQ 564
            MA  +   E  KAR+L V  ARE+D KN++L+EMER  +E      +   E +R+        +E+ K+               + L ++N KLK E E Q      L  + ++   ++  Q+  L  R   + +RE QL        E E +   K+     KE+  ++P     D  Y         ++   +  +EL   + LN+TL+++E MSN ELQ AR E+I  L  +L   S+  +KRMGEV +K FQ++C Q  +++DWE +S  L SLW+ +V   +WHPFK+   DGKLQ
Sbjct:    1 MAEGKLVSELRKARSLAVGLAREVDMKNQRLWEMERHSEEISSRLHSMIAEKDRMNHS---FSEEMRKM---------------QVLGSQNTKLKTELECQLSKMHVLFQESEKLKEEVAYQRKELELRANELDKRESQL--------EIERKSFYKE-----KEKIAQNPL----DSEYGMSVLINDLREKLAEKEEELHDMDILNQTLILREHMSNNELQAARKELINVLPQVLEGTSIIGLKRMGEVAQKPFQDVCLQRYSSQDWEMRSVELSSLWQDKVNTPNWHPFKQAVKDGKLQ 266


Match Name	Stats	Description
A0A7J7I3H6	E-Value: 6.322e-104, PID: 59.02	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A5J5BC66	E-Value: 2.002e-99, PID: 58.49	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A5B7BJR6	E-Value: 2.427e-99, PID: 58.49	(Putative domain XH {ECO:0000313\|EMBL:MPA69152.1})... [more]
A0A7J7I3S3	E-Value: 4.024e-96, PID: 59.02	(Uncharacterized protein {ECO:0000313\|EMBL:KAF5959... [more]
A0A2R6RTE5	E-Value: 2.542e-95, PID: 55.47	(Factor of DNA methylation like {ECO:0000313\|EMBL:... [more]
A0A2R6PLB5	E-Value: 3.399e-95, PID: 56.39	(Factor of DNA methylation like {ECO:0000313\|EMBL:... [more]
A0A7J0DKC6	E-Value: 5.215e-94, PID: 55.11	(XH/XS domain-containing protein {ECO:0000313\|EMBL... [more]
A0A834LVZ7	E-Value: 2.597e-91, PID: 52.01	(Uncharacterized protein {ECO:0000313\|EMBL:KAF7149... [more]
A0A5N6LWQ5	E-Value: 3.330e-90, PID: 55.73	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A2J6JQY9	E-Value: 2.152e-89, PID: 57.36	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.