Resource Type:
Polypeptide
Name:
DCAR_009640
Identifier:
DCAR_009640.mRNA-protein
Sequence:
MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLP
GGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRL
WLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLN
LRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDH
LVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIY
PGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCS
EMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGS
IKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCS
LKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEP
GWTAAHDMELSFIEPGQSSQHTANCNSSVYF*
Sequence Length:
482
Sequence Checksum:
4873e2cb404a773f71463de5cd34fb8d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_009640, derives from mRNA, DCAR_009640. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A8C8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527163.1}))
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 393/483 (81.37%), Postives = 438/483 (90.68%), Query Frame = 0
Match: A0A5J5A8C8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527163.1}))
HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 393/483 (81.37%), Postives = 438/483 (90.68%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTA--NCNSSVYF 481
M NGLP+L RVKLTDLIA+EGLPSD+Y+LS++TLSQSLA YSAAIIQLP DGALL SCLESAR YFH +PSYPSAD+ H NDSREWCKTSGY+ D +LW ETYD+RPGLTPT P++E EFPPAGL+DIF LLGKAARDILDAIS+YLNLRSS FTEILDN+PLRN ++SSSVLSV CH RPSFQG QHH+LTTQED LVMFSD +H VDKSL+SL+KSDKAGLHVRD++GRWVLVDGDLGP+EAI+YPGLALYQATAGYVSPAL+RT+I N QG M GRCS++FKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+SH TDQLFNR NFPSF+F AQDGS+KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LK+CENHIH +DSPCA+ RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS IEPGQ SQH+A NCNSSV F
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGLPSDSYKLSVSTLSQSLAQYSAAIIQLPTSDGALLRSCLESARFYFHQRPSYPSADMIHSNDSREWCKTSGYFTDPQLWQETYDFRPGLTPTEPNNEMEFPPAGLADIFALLGKAARDILDAISFYLNLRSSPFTEILDNIPLRNREVSSSVLSVCCHARPSFQGAQHHNLTTQEDGQLVMFSDHDHLVDKSLISLVKSDKAGLHVRDFHGRWVLVDGDLGPQEAIVYPGLALYQATAGYVSPALHRTEIDNLQGNMYGRCSLTFKLMPKSMTSLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSHPTDQLFNRPNFPSFNFPTAQDGSMKPMLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCENHIHTLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTATHDMELSLIEPGQPSQHSANCNCNSSVQF 483
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A0I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523458.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 387/481 (80.46%), Postives = 434/481 (90.23%), Query Frame = 0
Match: A0A5J5A0I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523458.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 387/481 (80.46%), Postives = 434/481 (90.23%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCNSSVYF 481
M NGLP+L RVKLTDLI +EG+PSD+Y+LS++TLSQSLA YSAAIIQLP DGALL SCLESARLYFH +PSYPSAD+ H ++SREWCKTSGYYAD +LWLETYD+RPGLTPT P++E EFPPAGL DIF LLGKAARDILDAIS+YLNLRSS FTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED L+MFS+ EHQVDKSL+SL+KSDKAGLHVRD +GRW+LVDGDLGP+EAI+YPGLALYQATAGYVSPAL RT+IGN QG M GRCSV+FK MPKS+ SLNCSEMRAAGHGVE+QFQ+PV VDDFMQ+SH TDQLFNR NFPSF+F AQDG +KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+ R++IGWPPGVPFVHPHDLPN+AKIGFLETYEPGW A H+MELS IEPGQ SQH+ANCNS V F
Sbjct: 1 MAGNGLPSLGRVKLTDLITSEGIPSDSYKLSVSTLSQSLAQYSAAIIQLPSSDGALLRSCLESARLYFHQRPSYPSADMIHSSESREWCKTSGYYADPQLWLETYDFRPGLTPTEPNNEMEFPPAGLVDIFALLGKAARDILDAISFYLNLRSSPFTEILDNVPLRNQEISSSVLSVCCHARPSFQGAQHHNLTTQEDGQLIMFSEHEHQVDKSLISLVKSDKAGLHVRDCHGRWILVDGDLGPQEAIVYPGLALYQATAGYVSPALNRTEIGNMQGNMYGRCSVAFKFMPKSMTSLNCSEMRAAGHGVEAQFQLPVLVDDFMQRSHPTDQLFNRHNFPSFNFPTAQDGCMKPLLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKECESHIHTLDSPCANIRIQIGWPPGVPFVHPHDLPNRAKIGFLETYEPGWMATHNMELSLIEPGQRSQHSANCNSPVQF 481
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YJD3 ((Uncharacterized protein {ECO:0000313|EMBL:KVI10226.1}))
HSP 1 Score: 819.691 bits (2116), Expect = 0.000e+0
Identity = 388/478 (81.17%), Postives = 424/478 (88.70%), Query Frame = 0
Match: A0A103YJD3 ((Uncharacterized protein {ECO:0000313|EMBL:KVI10226.1}))
HSP 1 Score: 819.691 bits (2116), Expect = 0.000e+0
Identity = 388/478 (81.17%), Postives = 424/478 (88.70%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCNSS 478
M NG PTL RVKLTDLIA+EGLPSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF KP+YP A++ HINDSREWCKTSGY AD +LW E+YDYRPGLT +E E PPAGL+DIFVLLGKAARDILDAIS+YLNLRS AFTEILDN+PLRN +ISSSVLSV CH RPSFQG QH +LTTQED LVMFSD EHQVDKSL+SLIKSDKAGLH+RD+NGRWVLVDGDLGPEEAI+YPGLALY ATAGYVSPAL+RTDIGN G MCGRCS+SFKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PV VDDFMQ+SHS DQLFNR +FPSFSF AQDGS+KP M++KKNNSRCKPLPPSKRLRLEAQRVLKERVQD+AD+K IKLRFC+LKECE+HIH +DSPCA+ R+EIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS IE GQSSQH NCN S
Sbjct: 22 MAGNGPPTLGRVKLTDLIASEGLPSDTYKLSVSTLSQSLAQYSAAIIQLPPSDGALLRCCLESARPYFTQKPAYPPANMIHINDSREWCKTSGYSADPQLWQESYDYRPGLTSIENHNEIELPPAGLADIFVLLGKAARDILDAISFYLNLRSCAFTEILDNIPLRNREISSSVLSVGCHARPSFQGGQHQNLTTQEDGQLVMFSDREHQVDKSLISLIKSDKAGLHIRDFNGRWVLVDGDLGPEEAIVYPGLALYHATAGYVSPALHRTDIGNLHGNMCGRCSISFKLMPKSMTSLNCSEMRAAGHGVEAQFQVPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQDGSMKPLMKRKKNNSRCKPLPPSKRLRLEAQRVLKERVQDMADKKGIKLRFCTLKECESHIHTLDSPCANIRLEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELSLIEAGQSSQHAENCNYS 499
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H8S4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948967.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 383/479 (79.96%), Postives = 432/479 (90.19%), Query Frame = 0
Match: A0A7J7H8S4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948967.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 383/479 (79.96%), Postives = 432/479 (90.19%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTA--NCNS 477
M NGLP+L RVKL+DLI +EGLPSD Y+LS++TLSQSLA YSAAIIQLP D ALL SCLESARLYFH +PSYPSAD+ H N+SREWCKTSGYYAD +LW ETYD+RPGLTP P++E EF P+GL+DIFVLLGKAARDILDAIS+YLNLRSS FTEILDNVPLRN +ISSS+LS+ CH RPSFQG QHH+LTTQED LVMFS+ E QVDKSL+SL+KSDKAGLH+RD++GRWVLVD DLGP+EAI+YPGLALYQATAGYVSPAL+RT+IGN QG + GRCS+SFKLMPKS+ SLNCSEMRAAGH VE+QFQ+PVPVDDFMQ+SH TDQLFNRQ+F SF+F AQDGS+KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+ RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS I+PGQ SQH+A NCNS
Sbjct: 1 MAGNGLPSLGRVKLSDLIPSEGLPSDLYKLSVSTLSQSLAQYSAAIIQLPPTDAALLRSCLESARLYFHQRPSYPSADMIHTNNSREWCKTSGYYADPQLWQETYDFRPGLTPMEPNNEMEFAPSGLADIFVLLGKAARDILDAISFYLNLRSSPFTEILDNVPLRNREISSSLLSICCHARPSFQGAQHHNLTTQEDGQLVMFSEHEQQVDKSLISLVKSDKAGLHIRDFHGRWVLVDEDLGPQEAIVYPGLALYQATAGYVSPALHRTEIGNLQGNLFGRCSLSFKLMPKSMTSLNCSEMRAAGHDVEAQFQLPVPVDDFMQRSHPTDQLFNRQSFSSFNFPAAQDGSMKPLLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKECESHIHTLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTATHDMELSLIDPGQPSQHSANQNCNS 479
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SWX7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI21777.3}))
HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 381/476 (80.04%), Postives = 426/476 (89.50%), Query Frame = 0
Match: D7SWX7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI21777.3}))
HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 381/476 (80.04%), Postives = 426/476 (89.50%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCN 476
M N LP+L RVKL DLIA EGLPSD+Y+LS++TLSQSLA YSAAIIQ P DGALL S L+SA LYFH + SYP+AD+ H N+SREWCKTSGYYAD + W ETYD+RPGLTP +S EFPPAGL DIF LLGKAARDILDAIS+YLNLRSS FTEILDNVPLR+ +ISSSVLSV C+GRPSFQG QHH+LTTQED LVMFSD EHQVDKSL++L+KSDKAGLHVRD++GRWVLVDGDLGP+EAI+YPGLALYQATAGYV PAL+RT+I N QG M GRCS++FKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+SH T+QLFNR NFPSF+F AQDGS+KP MR++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+TRMEIGWPPGVPFVHPHDLPNKAKIGFLE YEPGWTA HDMELS IEPGQ+SQH+ANCN
Sbjct: 1 MAGNSLPSLGRVKLCDLIACEGLPSDSYKLSVSTLSQSLAQYSAAIIQFPSSDGALLRSGLDSAHLYFHQRASYPAADMIHNNESREWCKTSGYYADPQQWQETYDFRPGLTPPESNSGLEFPPAGLPDIFSLLGKAARDILDAISFYLNLRSSPFTEILDNVPLRSREISSSVLSVCCYGRPSFQGPQHHNLTTQEDGQLVMFSDHEHQVDKSLITLVKSDKAGLHVRDFHGRWVLVDGDLGPQEAIVYPGLALYQATAGYVGPALHRTEISNMQGNMYGRCSLAFKLMPKSMTSLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSHPTEQLFNRNNFPSFNFPTAQDGSMKPLMRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCNLKECESHIHTLDSPCANTRMEIGWPPGVPFVHPHDLPNKAKIGFLEAYEPGWTATHDMELSLIEPGQASQHSANCN 476
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QCX7 ((Protein SCARECROW like {ECO:0000313|EMBL:PSS05981.1}) (Fragment))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 374/476 (78.57%), Postives = 426/476 (89.50%), Query Frame = 0
Match: A0A2R6QCX7 ((Protein SCARECROW like {ECO:0000313|EMBL:PSS05981.1}) (Fragment))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 374/476 (78.57%), Postives = 426/476 (89.50%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCN 476
M NGLP+L RVKL+DLI +EGLPSD+Y+LS++TLSQSLA YSAAIIQL D ALL S LESARLYF+ +PSYP++D+ H NDSREWCKTSGYY+D +LW ETYD+RPGLTPT P++E EFPPAGL DIF ++GKAARDILDAIS+YLNLRSSAFTEILDNVP+RN +ISSSVLS+ CH RPSFQG QHH+LTTQED LVMFS+ EHQVDKSL+SL+KSDKAGL++RD++G WVLVDGDLGP+EAI+YPGLALYQATAGYVSPALYRT+IGN +M GRCS+ FKLMPKS+ SLNCSEMRAAGHGVE QFQIPVPVDDFMQ+SH TDQLFNR NFPSF+F AQDGS+KP +R++KNN RCKPLPPSKRLRLEAQRVLK+RVQDIAD+K IKLRFC LKECE+HIH +DSPCA+ R+EIGWP GVPFVHPHDLPNKAKIGFLE YEPGWTA +DMELS I+PGQ SQH+ANCN
Sbjct: 1 MAGNGLPSLGRVKLSDLIPSEGLPSDSYKLSVSTLSQSLAQYSAAIIQLAPTDAALLRSSLESARLYFNQRPSYPTSDMIHTNDSREWCKTSGYYSDPQLWQETYDFRPGLTPTEPNNEMEFPPAGLVDIFSIIGKAARDILDAISFYLNLRSSAFTEILDNVPMRNREISSSVLSICCHARPSFQGAQHHNLTTQEDGQLVMFSEHEHQVDKSLISLVKSDKAGLYIRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYVSPALYRTEIGNLPSSMFGRCSLVFKLMPKSMTSLNCSEMRAAGHGVEPQFQIPVPVDDFMQRSHPTDQLFNRHNFPSFNFPVAQDGSMKPLLRRRKNNGRCKPLPPSKRLRLEAQRVLKQRVQDIADKKGIKLRFCPLKECESHIHTLDSPCANIRLEIGWPTGVPFVHPHDLPNKAKIGFLEAYEPGWTATNDMELSLIDPGQPSQHSANCN 476
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MJ55 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99575.1}))
HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 377/471 (80.04%), Postives = 423/471 (89.81%), Query Frame = 0
Match: A0A2J6MJ55 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99575.1}))
HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 377/471 (80.04%), Postives = 423/471 (89.81%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQH 471
M NGLP+L RVKLTDLIA+EG+PSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF+ KP YPS+D+ HI+DSREWCKTSGY AD +LW E+YDYRPGLT T P+++ E PP+GL+DIF+LLGKAARDILDAIS+YLNLRS AFTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED LVMF+D EHQVDKSL+S+IKSDKAGLH+RD+NGRWVLVDGDLGP+EAI+YPGLALY ATAGYVSPAL+RTDI + G M GRCSVS+KLMPKS+ SLNCSEMRAAGHGVE+QFQIPV VDDFMQ+SHS DQLFNR +FPSFSF AQ+GSIKP M++KKN++RCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFCSLKECE+HIH +DSPC + R+EIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMEL+ IE GQSSQH
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGIPSDTYKLSVSTLSQSLAQYSAAIIQLPPTDGALLRCCLESARPYFNQKPPYPSSDMIHIDDSREWCKTSGYTADPQLWQESYDYRPGLTSTEPNNDIELPPSGLTDIFMLLGKAARDILDAISFYLNLRSCAFTEILDNVPLRNREISSSVLSVGCHARPSFQGAQHHNLTTQEDGQLVMFTDHEHQVDKSLVSIIKSDKAGLHIRDFNGRWVLVDGDLGPQEAIMYPGLALYHATAGYVSPALHRTDINSLHGGMYGRCSVSYKLMPKSMTSLNCSEMRAAGHGVEAQFQIPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQEGSIKPLMKRKKNSTRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCSLKECESHIHTLDSPCGNIRLEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELTLIETGQSSQH 471
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PMN4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4107241.1}))
HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 422/471 (89.60%), Query Frame = 0
Match: A0A6S7PMN4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4107241.1}))
HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 422/471 (89.60%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQH 471
M NGLP+L RVKLTDLIA+EG+PSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF+ KP YPS+D+ HI+DSREWCKTSGY AD +LW E+YDYRPGLT T P+++ E PP+GL+DIF+LLGKAARDILDAIS+YLNLRS AFTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED LVMF+D EHQVDKSL+S+IKSDKAGLH+RD+NGRWVLVDGDLGP+EAI+YPGLALY ATAGYVSPAL+RTDI + G M GRCSVS+KLMPKS+ SLNCSEMRAAGHGVE+QFQIPV VDDFMQ+SHS DQLFNR +FPSFSF AQ+GSIKP M++KKN++RCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFCSLKECE+HIH +DSPC + R+EIGWP GVPFVHPHDLPNKAKIGFLETYEPGWTA HDMEL+ IE GQSSQH
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGIPSDTYKLSVSTLSQSLAQYSAAIIQLPPTDGALLRCCLESARPYFNQKPPYPSSDMIHIDDSREWCKTSGYTADPQLWQESYDYRPGLTSTEPNNDIELPPSGLTDIFMLLGKAARDILDAISFYLNLRSCAFTEILDNVPLRNREISSSVLSVGCHARPSFQGAQHHNLTTQEDGQLVMFTDHEHQVDKSLVSIIKSDKAGLHIRDFNGRWVLVDGDLGPQEAIMYPGLALYHATAGYVSPALHRTDINSLHGGMYGRCSVSYKLMPKSMTSLNCSEMRAAGHGVEAQFQIPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQEGSIKPLMKRKKNSTRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCSLKECESHIHTLDSPCGNIRLEIGWPAGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELTLIETGQSSQH 471
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CDT7 ((Uncharacterized protein {ECO:0000313|EMBL:TMX05833.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 369/476 (77.52%), Postives = 422/476 (88.66%), Query Frame = 0
Match: A0A6N2CDT7 ((Uncharacterized protein {ECO:0000313|EMBL:TMX05833.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 369/476 (77.52%), Postives = 422/476 (88.66%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCN 476
M NGLP L RVKL+DL+ EGLPSD+Y+LS++TLSQSLA YSAAIIQL DGALL S LESARLYF HKPSYP+AD+ H +DSREWCKTSGY+AD + W ETYD+RPGLTP+ P +E EFPPAGL+DIF LLG+AARDILDAIS+YLNLRSS FTEILDNVPLRN + SSSVLSV CH RPSFQG QHH LTTQED HL MFSD EHQVD+SL++++KSD+ GLHVRD++G WVLVDGDLGP+EAI+YPGLALYQATAGY+SPAL+RTDIGN QG++ GRCS+SFKLMPKS+ +LNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+ STDQL NR NFP+F+F QDGS+KP MR++K+NSR KPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LK+CE+HI ++DSPC + RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGW+A HDMELS I+PGQ SQHT NCN
Sbjct: 1 MAGNGLPALGRVKLSDLVPLEGLPSDSYKLSVSTLSQSLAQYSAAIIQLSTSDGALLRSSLESARLYFQHKPSYPAADVIHSDDSREWCKTSGYHADPQQWQETYDFRPGLTPSEPTTEIEFPPAGLADIFSLLGRAARDILDAISFYLNLRSSPFTEILDNVPLRNRETSSSVLSVCCHARPSFQGAQHHGLTTQEDGHLGMFSDHEHQVDRSLVTIVKSDRPGLHVRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQR--STDQLLNRSNFPTFNFPTVQDGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTTNCN 474
BLAST of DCAR_009640 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SBQ2 ((uncharacterized protein LOC113689673 {ECO:0000313|RefSeq:XP_027063209.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 368/466 (78.97%), Postives = 419/466 (89.91%), Query Frame = 0
Match: A0A6P6SBQ2 ((uncharacterized protein LOC113689673 {ECO:0000313|RefSeq:XP_027063209.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 368/466 (78.97%), Postives = 419/466 (89.91%), Query Frame = 0
Query: 11 RVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTANCN 476
RVKL+DL+ +EGLPSD+Y+LS++TLSQSLA YSAAIIQLP D ALL SCLESARLYF+ KPSYPSAD+ H +D REWCKTSGY AD +LW E YD+RPGLTP P +E EF PAGL DIF LLGKAARDILDAIS++LNLRSS FTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED LVMFSD EHQVD+SL++L+KSDKAGLHVRD++GRWVLVDGDLGP+EAI+YPGLALYQATAGY+SPA++R DIGN QG + GRCS++FKLMPKS+ +LNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+ STDQ+ +R NFP+F+F AQDGS+KP ++K+KN+SRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECENHIH++DSPCA+ RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGW+A HDMELS IEPGQ SQH ANCN
Sbjct: 14 RVKLSDLVPSEGLPSDSYKLSVSTLSQSLAQYSAAIIQLPASDAALLRSCLESARLYFNQKPSYPSADVIHPDDLREWCKTSGYRADPQLWQEIYDFRPGLTPADPTNEMEFAPAGLLDIFALLGKAARDILDAISFFLNLRSSPFTEILDNVPLRNREISSSVLSVCCHARPSFQGAQHHNLTTQEDGQLVMFSDQEHQVDRSLITLVKSDKAGLHVRDFHGRWVLVDGDLGPQEAIVYPGLALYQATAGYISPAMHRPDIGNLQGNIFGRCSLAFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQR--STDQVLSRNNFPTFTFPTAQDGSMKPIIKKRKNSSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKECENHIHSLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIEPGQPSQHMANCN 477
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A8C8 | E-Value: 0.000e+0, PID: 81.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
| A0A5J5A0I1 | E-Value: 0.000e+0, PID: 80.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A103YJD3 | E-Value: 0.000e+0, PID: 81.17 | (Uncharacterized protein {ECO:0000313|EMBL:KVI1022... [more] |
| A0A7J7H8S4 | E-Value: 0.000e+0, PID: 79.96 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5948... [more] |
| D7SWX7 | E-Value: 0.000e+0, PID: 80.04 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2177... [more] |
| A0A2R6QCX7 | E-Value: 0.000e+0, PID: 78.57 | (Protein SCARECROW like {ECO:0000313|EMBL:PSS05981... [more] |
| A0A2J6MJ55 | E-Value: 0.000e+0, PID: 80.04 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9957... [more] |
| A0A6S7PMN4 | E-Value: 0.000e+0, PID: 79.83 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4107... [more] |
| A0A6N2CDT7 | E-Value: 0.000e+0, PID: 77.52 | (Uncharacterized protein {ECO:0000313|EMBL:TMX0583... [more] |
| A0A6P6SBQ2 | E-Value: 0.000e+0, PID: 78.97 | (uncharacterized protein LOC113689673 {ECO:0000313... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |