Resource Type:
Polypeptide
Name:
DCAR_012486
Identifier:
DCAR_012486.mRNA-protein
Sequence:
MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHD
GSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWN
HQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKS
VIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD*
Sequence Length:
192
Sequence Checksum:
69dad79d8e25493724b3741c146de813
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_012486, derives from mRNA, DCAR_012486. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BJZ9 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_010277470.1}))
HSP 1 Score: 333.569 bits (854), Expect = 6.265e-114
Identity = 156/191 (81.68%), Postives = 175/191 (91.62%), Query Frame = 0
HSP 2 Score: 78.1814 bits (191), Expect = 8.088e-15
Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 0
HSP 3 Score: 72.7886 bits (177), Expect = 6.977e-13
Identity = 48/171 (28.07%), Postives = 88/171 (51.46%), Query Frame = 0
Match: A0A1U8BJZ9 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_010277470.1}))
HSP 1 Score: 333.569 bits (854), Expect = 6.265e-114
Identity = 156/191 (81.68%), Postives = 175/191 (91.62%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDET+RVWD KTG+ VHVIQAHS PVTSV +NRDGS+IVSGSHDG+CKIWD ++G C+K LIDDK PAVSFAKFSPNGKFILVATLDDTLKLWN+ G+FLKIYTGH+NR YCIT TFSVTNG IVSGSEDKCVY+WDLQGK+++QKLEGHTDTV+SV+CHPTEN IASAGLD DRTI+IWVQD
Sbjct: 126 LIVSGSFDETIRVWDVKTGRCVHVIQAHSEPVTSVHFNRDGSIIVSGSHDGNCKIWDADTGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLDDTLKLWNYSAGRFLKIYTGHVNRVYCITSTFSVTNGKYIVSGSEDKCVYLWDLQGKNMVQKLEGHTDTVISVTCHPTENKIASAGLDKDRTIKIWVQD 316
HSP 2 Score: 78.1814 bits (191), Expect = 8.088e-15
Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+T+ VW ++T + + HS V+ + ++ D I S S D + +IWD +G CVK L + V F+P I+ + D+T+++W+ +TG+ + + H + +T +G+ IVSGS D IWD + ++ L + V P I A LD T+++W
Sbjct: 42 LLASSSLDKTLIVWCSQTLNPLSRLIGHSEGVSDLAWSSDSHYICSASDDRTLRIWDARTGDCVKTL-RGHSGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGRCVHVIQAH---SEPVTSVHFNRDGSIIVSGSHDGNCKIWDADTGTCLKTLIDDKVPAVSFAKFSPNGKFILVA--TLDDTLKLW 224
HSP 3 Score: 72.7886 bits (177), Expect = 6.977e-13
Identity = 48/171 (28.07%), Postives = 88/171 (51.46%), Query Frame = 0
Query: 21 VVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+V + AH+ V+ V ++ DGSL+ S S D + +W +++ + LI + VS +S + +I A+ D TL++W+ +TG +K GH +C+ IVSGS D+ + +WD++ + ++ H++ V SV + ++I S D + +IW D
Sbjct: 20 LVRTLTAHTRAVSCVKFSNDGSLLASSSLDKTLIVWCSQTLNPLSRLI-GHSEGVSDLAWSSDSHYICSASDDRTLRIWDARTGDCVKTLRGHSGFVFCVNFN---PQSNLIVSGSFDETIRVWDVKTGRCVHVIQAHSEPVTSVHFNRDGSIIVSGSHDGN--CKIWDAD 184
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B784 ((Putative WD repeat-containing protein 5 {ECO:0000313|EMBL:MPA64840.1}))
HSP 1 Score: 332.798 bits (852), Expect = 9.367e-114
Identity = 159/191 (83.25%), Postives = 173/191 (90.58%), Query Frame = 0
HSP 2 Score: 80.4925 bits (197), Expect = 1.113e-15
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 0
HSP 3 Score: 65.855 bits (159), Expect = 1.991e-10
Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 0
Match: A0A5B7B784 ((Putative WD repeat-containing protein 5 {ECO:0000313|EMBL:MPA64840.1}))
HSP 1 Score: 332.798 bits (852), Expect = 9.367e-114
Identity = 159/191 (83.25%), Postives = 173/191 (90.58%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDETVRVWD KTG+ VHVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG +K LIDDK PA SFAKFSPNGKFILVATLDDTLKLWN+ TGKFLKIYTGH+NR YCIT TFSVTNG IVSGSEDKCVY+WDLQGK+++QKLEGH+DTV+SVSCHPT N IASAGLD DRT+RIWVQD
Sbjct: 123 LIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDAGSGAILKTLIDDKVPAASFAKFSPNGKFILVATLDDTLKLWNYSTGKFLKIYTGHVNRVYCITSTFSVTNGKYIVSGSEDKCVYLWDLQGKTMVQKLEGHSDTVISVSCHPTVNKIASAGLDGDRTVRIWVQD 313
HSP 2 Score: 80.4925 bits (197), Expect = 1.113e-15
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+T+ VW T +V + HS V+ + ++ D I S S D + +IWD + CVK L T V F+P I+ + D+T+++W+ +TG+ + + H + +T +G+ IVSGS D IWD ++++ L + P I A LD T+++W
Sbjct: 39 LLASSSLDKTLIVWSTDTLALVSRLVGHSEGVSDLAWSSDSHYICSASDDRTLRIWDARAADCVKTL-RGHTDFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGRSVHVIRAH---SMPVTSVHFNRDGSLIVSGSHDGSCKIWDAGSGAILKTLIDDKVPAASFAKFSPNGKFILVA--TLDDTLKLW 221
HSP 3 Score: 65.855 bits (159), Expect = 1.991e-10
Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 25 IQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+ AH+ V+ V ++ DG L+ S S D + +W ++ V L+ + VS +S + +I A+ D TL++W+ + +K GH + +C+ IVSGS D+ V +WD++ + + H+ V SV + ++I S D + +IW
Sbjct: 21 LTAHNRAVSCVKFSNDGHLLASSSLDKTLIVWSTDTLALVSRLV-GHSEGVSDLAWSSDSHYICSASDDRTLRIWDARAADCVKTLRGHTDFVFCVNFN---PQSNLIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGS--HDGSCKIW 178
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6I9R5 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIT01290.1}))
HSP 1 Score: 332.798 bits (852), Expect = 9.876e-114
Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 0
HSP 2 Score: 77.7962 bits (190), Expect = 1.023e-14
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 0
HSP 3 Score: 70.4774 bits (171), Expect = 4.135e-12
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 0
HSP 4 Score: 61.6178 bits (148), Expect = 5.640e-9
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 0
Match: A0A1J6I9R5 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIT01290.1}))
HSP 1 Score: 332.798 bits (852), Expect = 9.876e-114
Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDET+RVWD KTGK HVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 122 LIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGVCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTLRVWVQD 312
HSP 2 Score: 77.7962 bits (190), Expect = 1.023e-14
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWD 145
+ S S D+T+ VW +T + + HS V+ + ++ D S I S S D + +IWD + +CVK L T V F+P I+ + D+T+++W+ +TGK + H + +T +G+ IVSGS D IWD
Sbjct: 38 LFASASLDKTLIVWSTQTLNQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTL-RGHTGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGKSNHVIRAH---SMPVTSVHFNRDGSLIVSGSHDGSCKIWD 178
HSP 3 Score: 70.4774 bits (171), Expect = 4.135e-12
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 0
Query: 65 KVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
K ++ T AVS KFS NG+ A+LD TL +W+ QT L GH + ++ ++ + I S S+D+ + IWD + ++ L GHT V V+ +P N+I S D TIR+W
Sbjct: 17 KKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLNQLSRLVGH---SEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNLIVSGS--FDETIRVW 135
HSP 4 Score: 61.6178 bits (148), Expect = 5.640e-9
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 0
Query: 24 VIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
V+ H++ V+ V ++ +G L S S D + +W ++ + L+ + VS +S + +I A+ D TL++W+ + + +K GH +C+ IVSGS D+ + +WD++ + H+ V SV + ++I S D + +IW
Sbjct: 19 VLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLNQLSRLV-GHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFN---PQSNLIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGS--HDGSCKIW 177
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4A1Y1 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016470610.1}))
HSP 1 Score: 332.028 bits (850), Expect = 1.597e-113
Identity = 155/191 (81.15%), Postives = 171/191 (89.53%), Query Frame = 0
HSP 2 Score: 80.1073 bits (196), Expect = 1.650e-15
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 0
HSP 3 Score: 69.3218 bits (168), Expect = 1.184e-11
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 0
HSP 4 Score: 60.8474 bits (146), Expect = 1.151e-8
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 0
Match: A0A1S4A1Y1 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016470610.1}))
HSP 1 Score: 332.028 bits (850), Expect = 1.597e-113
Identity = 155/191 (81.15%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
IVSGSFDET+RVWD KTGK HVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 121 FIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGGCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTVRVWVQD 311
HSP 2 Score: 80.1073 bits (196), Expect = 1.650e-15
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL 155
+ S S D+T+ VW +T + + HS V+ + ++ D S I S S D + +IWD + +CVK L T V F+P FI+ + D+T+++W+ +TGK + H + +T +G+ IVSGS D IWD ++ L
Sbjct: 37 LFASASLDKTLIVWSTQTLTQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTL-RGHTGFVFCVNFNPQSNFIVSGSFDETIRVWDVKTGKSNHVIRAH---SMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGGCLKTL 187
HSP 3 Score: 69.3218 bits (168), Expect = 1.184e-11
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 0
Query: 65 KVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
K ++ T AVS KFS NG+ A+LD TL +W+ QT L GH + ++ ++ + I S S+D+ + IWD + ++ L GHT V V+ +P N I S D TIR+W
Sbjct: 16 KKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLTQLSRLVGH---SEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNFIVSGS--FDETIRVW 134
HSP 4 Score: 60.8474 bits (146), Expect = 1.151e-8
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 0
Query: 24 VIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
V+ H++ V+ V ++ +G L S S D + +W ++ + L+ + VS +S + +I A+ D TL++W+ + + +K GH +C+ IVSGS D+ + +WD++ + H+ V SV + ++I S D + +IW
Sbjct: 18 VLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLTQLSRLV-GHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFN---PQSNFIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGS--HDGSCKIW 176
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PF81 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6120132.1}))
HSP 1 Score: 331.643 bits (849), Expect = 2.837e-113
Identity = 155/190 (81.58%), Postives = 172/190 (90.53%), Query Frame = 0
HSP 2 Score: 77.411 bits (189), Expect = 1.282e-14
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 0
HSP 3 Score: 72.7886 bits (177), Expect = 7.460e-13
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 0
Match: A0A5N6PF81 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6120132.1}))
HSP 1 Score: 331.643 bits (849), Expect = 2.837e-113
Identity = 155/190 (81.58%), Postives = 172/190 (90.53%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQ 190
+IVSGSFDET+RVWD KTGK HVI+AHS+PVTSV +NRDGSLIVSGSHDGSCKIWD +G C+K LIDDK PAVSF KFSPNGKFILVATLDD LKLWN+ GKFLK+YTGH+N+TYCITPTFSVTNG IVSGSED CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMIASAGL DRTIRIW+Q
Sbjct: 127 LIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGSHDGSCKIWDTVTGTCLKTLIDDKVPAVSFTKFSPNGKFILVATLDDNLKLWNYSAGKFLKMYTGHVNKTYCITPTFSVTNGKYIVSGSEDHCVYIWDLQGKNLLQKLEGHTDTVISVNCHPTENMIASAGLTNDRTIRIWIQ 316
HSP 2 Score: 77.411 bits (189), Expect = 1.282e-14
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSV---TNGTCIVSGSEDKCVYIWD-LQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+T+ +W+A+T ++ + H+ V+ + ++ D I S S D + +IWD + +CVK L T V FS + I+ + D+T+++W+ +TGK T H+ R + + P SV +G+ IVSGS D IWD + G + ++ V P I A LD +++W
Sbjct: 43 LLASASLDKTLILWNAETLTLISRLTGHTAGVSDLAWSSDSHYICSASDDKTLRIWDASATECVKTL-RGHTDFVFCVNFSVHSNLIVSGSFDETIRVWDVKTGK-----TNHVIRAHSL-PVTSVHFNRDGSLIVSGSHDGSCKIWDTVTGTCLKTLIDDKVPAVSFTKFSPNGKFILVA--TLDDNLKLW 225
HSP 3 Score: 72.7886 bits (177), Expect = 7.460e-13
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 0
Query: 62 KCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+ VK L ++ AVS KFS NGK + A+LD TL LWN +T + TGH T ++ ++ I S S+DK + IWD ++ L GHTD V V+ N+I S D TIR+W
Sbjct: 20 RLVKTLTGHQS-AVSSVKFSNNGKLLASASLDKTLILWNAETLTLISRLTGH---TAGVSDLAWSSDSHYICSASDDKTLRIWDASATECVKTLRGHTDFVFCVNFSVHSNLIVSGS--FDETIRVW 140
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6K540 ((Uncharacterized protein {ECO:0000313|EMBL:PLY70196.1}))
HSP 1 Score: 331.643 bits (849), Expect = 3.380e-113
Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 0
HSP 2 Score: 76.2554 bits (186), Expect = 3.390e-14
Identity = 54/192 (28.12%), Postives = 95/192 (49.48%), Query Frame = 0
HSP 3 Score: 69.707 bits (169), Expect = 8.437e-12
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 0
Match: A0A2J6K540 ((Uncharacterized protein {ECO:0000313|EMBL:PLY70196.1}))
HSP 1 Score: 331.643 bits (849), Expect = 3.380e-113
Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQ 190
+IVSGSFDET+RVWD KTGK HVI+AHS+PVTSV +NRDGSLIVSGSHDGSCKIWD +G C+K LIDDK PAVSF KFSPNGKFILVATLDD LKLWN+ TGKFLK+YTGH+N+ YCITPTFSVTNG IVSGSED CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMIASAGL DRTIRIWVQ
Sbjct: 127 LIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVATLDDNLKLWNYSTGKFLKMYTGHVNKKYCITPTFSVTNGKYIVSGSEDHCVYIWDLQGKNLLQKLEGHTDTVISVNCHPTENMIASAGLLGDRTIRIWVQ 316
HSP 2 Score: 76.2554 bits (186), Expect = 3.390e-14
Identity = 54/192 (28.12%), Postives = 95/192 (49.48%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSV---TNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+++ +W+A+ ++ + H+ V+ + ++ D I S S D + +IWD + +CVK L T V FS + I+ + D+T+++W+ +TGK T H+ R + + P SV +G+ IVSGS D IWD + ++ L + V P I A LD +++W
Sbjct: 43 LLASASLDKSLILWNAENLTLISRLNGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTL-RGHTDFVFCVNFSVHSNLIVSGSFDETIRVWDVKTGK-----TNHVIRAHSL-PVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVA--TLDDNLKLW 225
HSP 3 Score: 69.707 bits (169), Expect = 8.437e-12
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 20 KVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++V + AH V+ V ++ G L+ S S D S +W+ E+ + L + T VS +S + +I A+ D TL++W+ + + +K GH + +C+ FSV + IVSGS D+ + +WD++ + H+ V SV + ++I S D + +IW
Sbjct: 20 RLVKTLTAHQSAVSCVKFSNSGKLLASASLDKSLILWNAENLTLISRL-NGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTLRGHTDFVFCV--NFSV-HSNLIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGS--HDGSCKIW 182
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PKX1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4112500.1}))
HSP 1 Score: 331.643 bits (849), Expect = 3.380e-113
Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 0
HSP 2 Score: 76.2554 bits (186), Expect = 3.390e-14
Identity = 54/192 (28.12%), Postives = 95/192 (49.48%), Query Frame = 0
HSP 3 Score: 69.707 bits (169), Expect = 8.437e-12
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 0
Match: A0A6S7PKX1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4112500.1}))
HSP 1 Score: 331.643 bits (849), Expect = 3.380e-113
Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQ 190
+IVSGSFDET+RVWD KTGK HVI+AHS+PVTSV +NRDGSLIVSGSHDGSCKIWD +G C+K LIDDK PAVSF KFSPNGKFILVATLDD LKLWN+ TGKFLK+YTGH+N+ YCITPTFSVTNG IVSGSED CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMIASAGL DRTIRIWVQ
Sbjct: 127 LIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVATLDDNLKLWNYSTGKFLKMYTGHVNKKYCITPTFSVTNGKYIVSGSEDHCVYIWDLQGKNLLQKLEGHTDTVISVNCHPTENMIASAGLLGDRTIRIWVQ 316
HSP 2 Score: 76.2554 bits (186), Expect = 3.390e-14
Identity = 54/192 (28.12%), Postives = 95/192 (49.48%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSV---TNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+++ +W+A+ ++ + H+ V+ + ++ D I S S D + +IWD + +CVK L T V FS + I+ + D+T+++W+ +TGK T H+ R + + P SV +G+ IVSGS D IWD + ++ L + V P I A LD +++W
Sbjct: 43 LLASASLDKSLILWNAENLTLISRLNGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTL-RGHTDFVFCVNFSVHSNLIVSGSFDETIRVWDVKTGK-----TNHVIRAHSL-PVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVA--TLDDNLKLW 225
HSP 3 Score: 69.707 bits (169), Expect = 8.437e-12
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 20 KVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++V + AH V+ V ++ G L+ S S D S +W+ E+ + L + T VS +S + +I A+ D TL++W+ + + +K GH + +C+ FSV + IVSGS D+ + +WD++ + H+ V SV + ++I S D + +IW
Sbjct: 20 RLVKTLTAHQSAVSCVKFSNSGKLLASASLDKSLILWNAENLTLISRL-NGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTLRGHTDFVFCV--NFSV-HSNLIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGS--HDGSCKIW 182
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FU13 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930394.1}))
HSP 1 Score: 330.487 bits (846), Expect = 7.480e-113
Identity = 156/191 (81.68%), Postives = 173/191 (90.58%), Query Frame = 0
HSP 2 Score: 82.4185 bits (202), Expect = 2.158e-16
Identity = 53/189 (28.04%), Postives = 93/189 (49.21%), Query Frame = 0
HSP 3 Score: 66.6254 bits (161), Expect = 1.089e-10
Identity = 43/164 (26.22%), Postives = 80/164 (48.78%), Query Frame = 0
HSP 4 Score: 53.9138 bits (128), Expect = 3.044e-6
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0
Match: A0A7J7FU13 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930394.1}))
HSP 1 Score: 330.487 bits (846), Expect = 7.480e-113
Identity = 156/191 (81.68%), Postives = 173/191 (90.58%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDETVRVWD KTG+ VHVI+AHSMPVTSV +NRDGSLIVSGS DGSCKIWD +G C+K LIDDK PAVSFAKFSPNGKFILVATLDDTLKLWN+ TGKFLKIYTGH NR YC+T TFSVTNG IVSGSEDK VY+WDLQGK+++QKL+GH+DTV+SV+CHPTEN IASAGLD D+TIRIWVQD
Sbjct: 122 LIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGSRDGSCKIWDAATGSCLKTLIDDKVPAVSFAKFSPNGKFILVATLDDTLKLWNYSTGKFLKIYTGHANRAYCVTSTFSVTNGKYIVSGSEDKSVYLWDLQGKNMVQKLDGHSDTVISVTCHPTENKIASAGLDGDKTIRIWVQD 312
HSP 2 Score: 82.4185 bits (202), Expect = 2.158e-16
Identity = 53/189 (28.04%), Postives = 93/189 (49.21%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+ + VW ++T ++ + HS V+ + ++ D I S S D + +IWD+ + +CVK L T V F+P I+ + D+T+++W+ +TG+ + + H + +T +G+ IVSGS D IWD S ++ L + V P I A LD T+++W
Sbjct: 38 LLASASLDKKLIVWSSQTLTLISRLDGHSDGVSDLAWSSDSHYICSASDDRTLRIWDSRAAECVKTL-RGHTDFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGRSVHVIRAH---SMPVTSVHFNRDGSLIVSGSRDGSCKIWDAATGSCLKTLIDDKVPAVSFAKFSPNGKFILVA--TLDDTLKLW 220
HSP 3 Score: 66.6254 bits (161), Expect = 1.089e-10
Identity = 43/164 (26.22%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 25 IQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+ H V+ V ++ DG+L+ S S D +W +++ + L D + VS +S + +I A+ D TL++W+ + + +K GH + +C+ IVSGS D+ V +WD++ + + H+ V SV + ++I S D + +IW
Sbjct: 20 LTGHQRAVSCVKFSNDGTLLASASLDKKLIVWSSQTLTLISRL-DGHSDGVSDLAWSSDSHYICSASDDRTLRIWDSRAAECVKTLRGHTDFVFCVNFN---PQSNLIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGS--RDGSCKIW 177
HSP 4 Score: 53.9138 bits (128), Expect = 3.044e-6
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0
Query: 100 NHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
NH+ + LK TGH C+ FS +GT + S S DK + +W Q ++I +L+GH+D V ++ + I SA DRT+RIW
Sbjct: 10 NHRPYRHLKTLTGHQRAVSCVK--FS-NDGTLLASASLDKKLIVWSSQTLTLISRLDGHSDGVSDLAWSSDSHYICSAS--DDRTLRIW 93
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HLE2 ((Conserved WD40 repeat-containing protein {ECO:0000313|EMBL:PIN18253.1}))
HSP 1 Score: 330.487 bits (846), Expect = 8.732e-113
Identity = 156/191 (81.68%), Postives = 169/191 (88.48%), Query Frame = 0
HSP 2 Score: 83.9593 bits (206), Expect = 5.656e-17
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 0
HSP 3 Score: 67.781 bits (164), Expect = 4.125e-11
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 0
Match: A0A2G9HLE2 ((Conserved WD40 repeat-containing protein {ECO:0000313|EMBL:PIN18253.1}))
HSP 1 Score: 330.487 bits (846), Expect = 8.732e-113
Identity = 156/191 (81.68%), Postives = 169/191 (88.48%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDETVRVWD KTGK VHVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG +K LIDDK PAVSFAKFSPNGKFILVATLDDTLKLWN+ GKFLK YTGH+NR YCI PTFSVT IVSGSED CVY+WDLQGK+++QKLEGHTDTV+SVSCHPT NMI SAGLD DRT+R+WVQD
Sbjct: 125 LIVSGSFDETVRVWDVKTGKAVHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGSLLKTLIDDKVPAVSFAKFSPNGKFILVATLDDTLKLWNYSAGKFLKTYTGHVNRVYCIMPTFSVTGEKYIVSGSEDNCVYLWDLQGKNLVQKLEGHTDTVISVSCHPTVNMIVSAGLDNDRTLRVWVQD 315
HSP 2 Score: 83.9593 bits (206), Expect = 5.656e-17
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+ S S DET+ V+ +T + + HS V + ++ D + I S S D + +IWD +G+CVK L T V F+P I+ + D+T+++W+ +TGK + + H + +T +G+ IVSGS D IWD S+++ L + V P I A LD T+++W
Sbjct: 41 LFASASLDETIIVYSTETLTQISHLIGHSKGVCDLAWSSDSTYICSASDDRTLRIWDARAGECVKTL-KGHTDFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGKAVHVIRAH---SMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGSLLKTLIDDKVPAVSFAKFSPNGKFILVA--TLDDTLKLW 223
HSP 3 Score: 67.781 bits (164), Expect = 4.125e-11
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 0
Query: 64 VKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+K ++ + T AVS KFS NG A+LD+T+ +++ +T + GH ++ C S + T I S S+D+ + IWD + ++ L+GHTD V V+ +P N+I S D T+R+W
Sbjct: 19 LKKILTNHTRAVSSVKFSNNGMLFASASLDETIIVYSTETLTQISHLIGH-SKGVCDLAWSS--DSTYICSASDDRTLRIWDARAGECVKTLKGHTDFVFCVNFNPQSNLIVSGS--FDETVRVW 138
BLAST of DCAR_012486 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803NYA6 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:cds.evm.model.02.2650}))
HSP 1 Score: 329.717 bits (844), Expect = 1.576e-112
Identity = 152/191 (79.58%), Postives = 176/191 (92.15%), Query Frame = 0
HSP 2 Score: 78.1814 bits (191), Expect = 7.401e-15
Identity = 53/191 (27.75%), Postives = 91/191 (47.64%), Query Frame = 0
HSP 3 Score: 64.6994 bits (156), Expect = 5.699e-10
Identity = 42/171 (24.56%), Postives = 87/171 (50.88%), Query Frame = 0
Match: A0A803NYA6 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:cds.evm.model.02.2650}))
HSP 1 Score: 329.717 bits (844), Expect = 1.576e-112
Identity = 152/191 (79.58%), Postives = 176/191 (92.15%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 191
+IVSGSFDET+R+W+ KTGK +H I+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD+ +G C+K LIDDK PAVSFAKFSPNGKFILVATL+DTLKLWN+ TGKFLKIY+GH+N+TYCIT TFSVTNG IVSGSEDKCVY+WDLQ K+++Q+LEGHTDTV+SVSCHPTEN IASAGL+ D+T+RIWVQD
Sbjct: 124 LIVSGSFDETIRIWEVKTGKCLHSIKAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDSATGACLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSTGKFLKIYSGHVNKTYCITSTFSVTNGKYIVSGSEDKCVYLWDLQHKNMVQRLEGHTDTVISVSCHPTENKIASAGLEGDKTVRIWVQD 314
HSP 2 Score: 78.1814 bits (191), Expect = 7.401e-15
Identity = 53/191 (27.75%), Postives = 91/191 (47.64%), Query Frame = 0
Query: 1 MIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNES--GKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKL-EGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
++ S S D+T+ +W + ++H + HS ++ + ++ D I S S D + +IWD S G+CVK L + V F+P I+ + D+T+++W +TGK L H + +T +G+ IVSGS D IWD + ++ L + V P I A L+ T+++W
Sbjct: 38 LLASASLDKTIAIWSSSALTLLHRLVGHSEGISDLSWSSDSHYICSASDDRTLRIWDARSAKGECVKTL-RGHSDLVFCVNFNPQSNLIVSGSFDETIRIWEVKTGKCLHSIKAH---SMPVTSVHFNRDGSLIVSGSHDGSCKIWDSATGACLKTLIDDKVPAVSFAKFSPNGKFILVA--TLNDTLKLW 222
HSP 3 Score: 64.6994 bits (156), Expect = 5.699e-10
Identity = 42/171 (24.56%), Postives = 87/171 (50.88%), Query Frame = 0
Query: 20 KVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQT--GKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 188
+ + ++AH ++ V ++ DG+L+ S S D + IW + + + L+ + +S +S + +I A+ D TL++W+ ++ G+ +K GH + +C+ IVSGS D+ + IW+++ + ++ H+ V SV + ++I S D + +IW
Sbjct: 15 RYLKTLRAHERSISCVKFSNDGTLLASASLDKTIAIWSSSALTLLHRLV-GHSEGISDLSWSSDSHYICSASDDRTLRIWDARSAKGECVKTLRGHSDLVFCVNFN---PQSNLIVSGSFDETIRIWEVKTGKCLHSIKAHSMPVTSVHFNRDGSLIVSGS--HDGSCKIW 179
| Match Name | Stats | Description |
|---|---|---|
| A0A1U8BJZ9 | E-Value: 6.265e-114, PID: 81.68 | (COMPASS-like H3K4 histone methylase component WDR... [more] |
| A0A5B7B784 | E-Value: 9.367e-114, PID: 83.25 | (Putative WD repeat-containing protein 5 {ECO:0000... [more] |
| A0A1J6I9R5 | E-Value: 9.876e-114, PID: 81.15 | (Compass-like h3k4 histone methylase component wdr... [more] |
| A0A1S4A1Y1 | E-Value: 1.597e-113, PID: 81.15 | (COMPASS-like H3K4 histone methylase component WDR... [more] |
| A0A5N6PF81 | E-Value: 2.837e-113, PID: 81.58 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6120... [more] |
| A0A2J6K540 | E-Value: 3.380e-113, PID: 82.11 | (Uncharacterized protein {ECO:0000313|EMBL:PLY7019... [more] |
| A0A6S7PKX1 | E-Value: 3.380e-113, PID: 82.11 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4112... [more] |
| A0A7J7FU13 | E-Value: 7.480e-113, PID: 81.68 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5930... [more] |
| A0A2G9HLE2 | E-Value: 8.732e-113, PID: 81.68 | (Conserved WD40 repeat-containing protein {ECO:000... [more] |
| A0A803NYA6 | E-Value: 1.576e-112, PID: 79.58 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |