Resource Type:
Polypeptide
Name:
DCAR_011279
Identifier:
DCAR_011279.mRNA-protein
Sequence:
MFHEPVRDYSRTSFSPAWALEGQEVEGVDTKGDLNSLDRQTDESVGLNGA
HVNSVEGNDIANNNDDKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAK
TPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS
SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMG
IYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFF
LDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLS
TNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDS
EISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFN
TLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAA
VQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPN
LYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNN
FGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYIS
GLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSK
LAGIPRRGKPFDRRELYAPETML*
Sequence Length:
674
Sequence Checksum:
f07aea524730c9d94a0153f8fddc30f1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_011279, derives from mRNA, DCAR_011279. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A7J2 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177} (Fragment))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 439/593 (74.03%), Postives = 521/593 (87.86%), Query Frame = 0
Match: A0A5B7A7J2 (PPR_long domain-containing protein {ECO:0000259|Pfam:PF17177} (Fragment))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 439/593 (74.03%), Postives = 521/593 (87.86%), Query Frame = 0
Query: 81 KERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDSSSV-GPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVR-AYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
KE+SKR+DVRAL L+ AKT DDVEEVLKD E+PL+VYSS+IR FG++ +DSA+AL WLKRK+KD++ + GPNLFIYNSLLG +KQ+ + E +K+++DMA EG+ PNIVTYNTLMGIYL +GR V+ALNLFEEI+ KGL SPASYSTAL A+RRLE+GFGALKF++++REKY+ ++G D++EDW+ EFAKLENF VRICYQV R WLV +NLS+NVLKL +MDKA +QTG+ E+ERLVWACTREEHY V KELYNRIR+MDS ISLSVCNH+IWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFN LLTAA+K+GIWRWGVRLLNKME+KG+KPGSREWNAVL+ACSKASETSAAVQIF+RM+E GEKPT++SYGALLSALEKGKLYDEAL+VW+HM+K+ VEPNLYAYTIM SIYA QGKF IVDSIIQ+MI+ +EPTVVTFNAIIS CARNN G +AYEWF RMKVH++ PNEV+YEMLIEALT DGKPRLAY++Y+R A+ LNLS KAYDAV++S++ Y +TIDV ++GPRP E+KKKVQIRKN+SEF LA +PRR KPFD +E+Y P+T
Sbjct: 1 KEKSKRVDVRALAWSLRFAKTSDDVEEVLKDKAELPLRVYSSMIRGFGKDKKLDSAMALVEWLKRKRKDTNGLLGPNLFIYNSLLGAVKQSENFGEVDKVINDMAMEGVHPNIVTYNTLMGIYLEQGREVEALNLFEEIQNKGLSPSPASYSTALLAFRRLEEGFGALKFYVELREKYQKGDIGKDVDEDWEKEFAKLENFTVRICYQVMRCWLVNDENLSSNVLKLLTEMDKAAIQTGRTEHERLVWACTREEHYTVVKELYNRIREMDSGISLSVCNHVIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNILLTAARKKGIWRWGVRLLNKMEDKGLKPGSREWNAVLVACSKASETSAAVQIFRRMVEQGEKPTIVSYGALLSALEKGKLYDEALKVWEHMIKVGVEPNLYAYTIMASIYASQGKFNIVDSIIQDMISFGVEPTVVTFNAIISGCARNNMGSAAYEWFHRMKVHDISPNEVTYEMLIEALTKDGKPRLAYELYLRGAHNECLNLSSKAYDAVVQSSQVYGATIDVSALGPRPPEKKKKVQIRKNLSEFCNLADVPRRSKPFDTKEIYTPQT 593
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H814 ((Pentatricopeptide repeat (PPR-like) superfamily protein {ECO:0000313|EMBL:GFZ19085.1}))
HSP 1 Score: 920.228 bits (2377), Expect = 0.000e+0
Identity = 441/673 (65.53%), Postives = 540/673 (80.24%), Query Frame = 0
Match: A0A7J0H814 ((Pentatricopeptide repeat (PPR-like) superfamily protein {ECO:0000313|EMBL:GFZ19085.1}))
HSP 1 Score: 920.228 bits (2377), Expect = 0.000e+0
Identity = 441/673 (65.53%), Postives = 540/673 (80.24%), Query Frame = 0
Query: 4 EPVRDYSRTSFSPAWALEGQEVEGVDTKGDLNSLDRQTDESVGLNGAHVNSVEGND---IANNND---DKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKD--SSSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYA 668
EP +D R S + W LE Q + + + LD + G N A+ + V+ + +A N + ++++D + GK+RS R+DVR+L L+ A+T DVEEVLKD E+PLQVYS++IR FG++ + SA+AL WLK KKKD S+S+GPNLFI+NSLLG +KQ+ +++E EK+++DMAAEG+ PN+VTYNTLMGIY+ +GR V+ALNLFEEI+ KGL S ASYST L AYRRLEDGFGALKF+L+++EKY+N E+G D EDW+ EFAKLENF+V+ C V R+WLVK+DNL+TNVLKL +MD+AGLQTG+ EYERL+WACTREEHY VAKELY+RIR+ SEISLSVCNH+IWLMGKAKKWWAALE+YEDLL+KGPKPNNMSYELVVSHFN LLTAA+KRGIWRWG+RLL+KM+EKG+KPGSREWNAVL+ACSKASETSAA+Q+FKRM+E GEKPT+ISYGALLSALEKGKLYDEA +VW HM+K+ VEPNLYAYTI+ SIY Q KF IVDSII+EM IEPTVVT+NAIIS CA NN GG AYEWF +M+V N+ PNE++YEMLIEALT DGKP+LAYD Y+RA GLNL+ KAYDAVI+S++ Y +TIDV MGPRP ER+KKVQIRK SEFS LA +PRR +P R+E Y
Sbjct: 82 EPNKDPFRASKALTWTLEAQAITSEFVEQNSGPLDGTS----GKNNANCDHVDRDTKLVLAKNENGIVNEIEDEKGINNGEVGKKRSGRVDVRSLAWSLRFARTAKDVEEVLKDKGELPLQVYSTMIRGFGKDKRISSAMALVQWLKEKKKDANSTSIGPNLFIFNSLLGAVKQSQQFEEVEKVLNDMAAEGVVPNVVTYNTLMGIYIEQGRGVEALNLFEEIRRKGLSPSSASYSTTLVAYRRLEDGFGALKFYLELKEKYRNGEIGRDGGEDWENEFAKLENFMVQTCCHVMRRWLVKSDNLNTNVLKLLTEMDRAGLQTGRVEYERLMWACTREEHYIVAKELYSRIRERGSEISLSVCNHVIWLMGKAKKWWAALEIYEDLLEKGPKPNNMSYELVVSHFNILLTAARKRGIWRWGIRLLDKMQEKGLKPGSREWNAVLVACSKASETSAAMQVFKRMVEQGEKPTIISYGALLSALEKGKLYDEARRVWDHMIKVGVEPNLYAYTILASIYTAQRKFNIVDSIIREMGVYGIEPTVVTYNAIISGCAYNNMGGEAYEWFHKMRVQNISPNEITYEMLIEALTKDGKPKLAYDFYLRAQNEGLNLASKAYDAVIQSSQIYGATIDVSIMGPRPPEREKKVQIRKEQSEFSNLADVPRRSEPLLRKETYT 750
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6JG04 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:OIT05945.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 444/670 (66.27%), Postives = 529/670 (78.96%), Query Frame = 0
Match: A0A1J6JG04 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:OIT05945.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 444/670 (66.27%), Postives = 529/670 (78.96%), Query Frame = 0
Query: 5 PVRDYSRTSFSPAWAL-EGQEVEGVDTKGDLNSLDRQTDESVGLNG-AHVNSVEGNDIANNNDDKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
P R + SF P++AL + E + +D S T E G+ G V E + +N DD D I+ +E+ G+ + +++DVRAL L KT D+V+EVLKD E+PLQVYSS+IR FG++ + SA+AL WL+R+ KD+ S+ N+FIYNSLLG +K+ GKY+ +K+M DM +EG+ PN+VTYNTLM IY+ +GR ++ALNLF+E+ KGL SPA+YSTAL AYRRLEDG GA+ FF++ REKY+N E+GN E+W YEF KLENF +RICYQV RQWLVK +N STNVLKL DMDKA LQ AEYERLVWACTREEHY VAKELYNRIR+ D+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AAKKRGIWRWGVRLLNKMEEKG+KP SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+KM VEPNLYAYTIM SIY QGKF IVDSII+EM+++ EPTVVTFNAIIS CARN G AYEWF RMK N+ PNEVSYEMLIEAL NDGKPRLAY++Y +A GL LS KAYDAVI SA+ Y ++ID+ +GPRP E+KK+VQIRKN+SEF +A +PRR + FDR E++ +T
Sbjct: 75 PFRRGKKDSFGPSFALTQASEEQVIDCDVIKQSSQSFTREKGGVEGFGCVQLEEKRVLTHNYDDDDCDVKIE-EEEVGRVKGEKVDVRALAQSLHFVKTADEVDEVLKDKVELPLQVYSSMIRGFGKDKKLHSAMALVKWLRRRSKDNIGSITLNVFIYNSLLGAIKEAGKYEFVDKVMDDMVSEGVDPNVVTYNTLMRIYIEQGRELEALNLFKEMSKKGLFPSPATYSTALFAYRRLEDGLGAIAFFVNTREKYQNGEIGNIEEENWGYEFPKLENFTIRICYQVMRQWLVKGENSSTNVLKLLTDMDKARLQPSCAEYERLVWACTREEHYVVAKELYNRIRERDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAAKKRGIWRWGVRLLNKMEEKGLKPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKMGVEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVSTGFEPTVVTFNAIISGCARNGMGSVAYEWFHRMKTQNITPNEVSYEMLIEALVNDGKPRLAYELYAKALNEGLCLSTKAYDAVISSAQAYGASIDLSILGPRPPEKKKRVQIRKNLSEFCNIADVPRRSRHFDREEIFTAQT 743
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3D9X8 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHU27792.1}))
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 425/597 (71.19%), Postives = 507/597 (84.92%), Query Frame = 0
Match: A0A2G3D9X8 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHU27792.1}))
HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 425/597 (71.19%), Postives = 507/597 (84.92%), Query Frame = 0
Query: 76 KEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
+E+ G+ + + +DVRAL L + D+V+EVLKD E+PLQVYSS+IR FG++ ++SA+AL WL+R+ KD+ SV N+FIYNSLLG +K+ GKY +K+M+DM +EG++PN+VTYNTLM IY+ +GR ++ALNLF E+ K L SPASYSTAL AYRRLEDGFGA+ FF++ REKY+N E+GN E+W+YEFAKLE+FI+RICYQV RQWLVK + STN+LKL DMDKA LQT +AEYERLVWACTREEHY VAKELYNRIR+MD+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AAKKRGIWRWGVRLLNKMEEKG++P SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+K+ +EPNLYAYTIM SIY QGKF IVDSII+EM+++ +EPTVVTFNAIISACARN G AYEWF+RMK N+ PNEVSYEMLIEAL NDGKPRLAY++YVRA GL+LS KAYDAVI SA+ Y +TID+ +GPRP E+KK+VQIRK++SEF +A +PRR +PFDR E++ T
Sbjct: 143 EEEAGRVKGENVDVRALAQSLHFVRNADEVDEVLKDKVELPLQVYSSMIRGFGKDKKLNSAMALVEWLRRRSKDNIGSVSLNVFIYNSLLGAIKEAGKYNFVDKVMNDMVSEGVEPNVVTYNTLMRIYIEQGRELEALNLFREMPKKRLFPSPASYSTALFAYRRLEDGFGAITFFVETREKYQNGEIGNIEEENWEYEFAKLEDFIIRICYQVMRQWLVKGEKASTNILKLLTDMDKARLQTSRAEYERLVWACTREEHYVVAKELYNRIREMDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAAKKRGIWRWGVRLLNKMEEKGLRPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKVGIEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVSTGVEPTVVTFNAIISACARNGMGSVAYEWFQRMKTQNITPNEVSYEMLIEALANDGKPRLAYELYVRAISEGLSLSTKAYDAVILSAQAYGATIDLSILGPRPPEKKKRVQIRKSLSEFCNIADVPRRSRPFDREEIFTART 739
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1AY72 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400032853}))
HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 438/669 (65.47%), Postives = 529/669 (79.07%), Query Frame = 0
Match: M1AY72 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400032853}))
HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 438/669 (65.47%), Postives = 529/669 (79.07%), Query Frame = 0
Query: 5 PVRDYSRTSFSPAWALEGQEVEGVDTKGDLNSLDRQTDESVGLNGAHVNSVEGNDIANNNDDKLQDHSIKGKED-FGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
P R + SF+ A E +++ K + S T G+ G +E NN + D + +ED G+ + +++DVRAL L KT D+V+EVLKD E+PLQVYSS+IR FG++ ++SA+AL WL+R+ KD+ S+ N+FIYNSLLG +K+ GKY +K+M DM +EG+QPN+VTYNTLM IY+ +GR ++ALNLF + KGL SPASYSTAL AYRRLEDGFGA+ FF++ REKY+N E+GN E+W+ EFAKLENFIVRICYQV RQWLVK +N +TNVLKL DMD+A LQ +AEYERLVWACTREEH+ VAKELYNRIR+ D+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AA+KRGIWRWGVRLLNKMEEKG+KP SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+K+ +EPNLYAYTIM SIY QGKF IVDSII+EM+T+ +EPTVVTFNAIIS CARN AYEWF+RMK N+ PNEVSYEMLIEAL NDGKPRLAY++YVRA GL+LS KAYDAVI S + Y ++ID+ +GPRP E+KK+VQIRK++SEF +A +PRR +PFDR E++ +T
Sbjct: 72 PFRPQKKDSFALTQASEEKDIHCDVVKQNSQSF---TSGEGGVEGFTCVQLEEKGNLTNNIEYDDDGDVGNEEDEAGRVKGEKVDVRALAQSLHFVKTADEVDEVLKDKIELPLQVYSSMIRGFGKDKKLNSAMALVEWLRRRSKDNIGSISLNVFIYNSLLGAIKEAGKYDFVDKVMDDMVSEGVQPNVVTYNTLMRIYIEQGRELEALNLFRLMPKKGLSPSPASYSTALFAYRRLEDGFGAITFFVETREKYQNGEIGNIEEENWEDEFAKLENFIVRICYQVMRQWLVKGENANTNVLKLLTDMDRARLQLSRAEYERLVWACTREEHHVVAKELYNRIRERDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAARKRGIWRWGVRLLNKMEEKGLKPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKVGIEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVTTGVEPTVVTFNAIISGCARNGMESVAYEWFQRMKTQNITPNEVSYEMLIEALANDGKPRLAYELYVRALTEGLSLSTKAYDAVISSTQAYGASIDLSILGPRPPEKKKRVQIRKSLSEFCNIADVPRRSRPFDREEIFTAQT 737
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XIQ2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT57373.1}))
HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0
Identity = 438/672 (65.18%), Postives = 534/672 (79.46%), Query Frame = 0
Match: A0A2G2XIQ2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT57373.1}))
HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0
Identity = 438/672 (65.18%), Postives = 534/672 (79.46%), Query Frame = 0
Query: 2 FHEPVRDYSRTSFSPAWALEGQEVEGVD-TKGDLNSLDRQTDESVGLNGAHVNSVEGNDIANNNDDKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
F P +D+ SF+ A A + +E T+G+ + T + G ++VE DI + +E+ G+ + +++DVRAL L + D+V+EVLKD E+PLQVYSS+IR FG++ ++SA+AL WL+R+ D+ SV N+FIYNSLLG +K+ GKY +K+M+DM +EG++PN+VTYNTLM IY+ +GR ++ALNLF E+ K L SPASYSTAL AYRRLEDGFGA+ FF++ REKY+N E+GN E+W+YEFAKLE+FI+RICYQV RQW+VK + STN+LKL DMDKA LQ +AEYERLVWACTREEHY VAKELYNRIR+MD+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AAKKRGIWRWGVRLLNKMEEKG++P SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+K+ +EPNLYAYTIM SIY QGKF IVDSII+EM+++ +EPTVVTFNAIISACARN G AYEWF+RMK N+ PNEVSYEMLIEAL NDGKPRLAY++YVRA GL+LS KAYDAVI SA+ Y +TID+ +GPRP E+KK+VQIRK++SEF +A +PRR +PFDR E++ T
Sbjct: 76 FRLPKKDFLGPSFAVAQASDVREQNSQSFTRGE-RGVGALTCVELEEKGDLSHNVEFGDIGSE------------EEEAGRVKGEKVDVRALAQSLHFVRNADEVDEVLKDKVELPLQVYSSMIRGFGKDKKLNSAMALVEWLRRRSNDNIGSVSLNVFIYNSLLGAIKEAGKYNFVDKVMNDMVSEGVEPNVVTYNTLMRIYIEQGRELEALNLFREMPKKRLFPSPASYSTALFAYRRLEDGFGAITFFVETREKYQNGEIGNIEEENWEYEFAKLEDFIIRICYQVMRQWMVKGEKASTNILKLLTDMDKARLQPSRAEYERLVWACTREEHYVVAKELYNRIREMDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAAKKRGIWRWGVRLLNKMEEKGLRPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKVGIEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVSTGVEPTVVTFNAIISACARNGMGSVAYEWFQRMKTQNITPNEVSYEMLIEALANDGKPRLAYELYVRAISEGLSLSTKAYDAVISSAQAYGATIDLSILGPRPPEKKKRVQIRKSLSEFCNIADVPRRSRPFDREEIFTART 734
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FQZ8 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT91988.1}))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 439/672 (65.33%), Postives = 534/672 (79.46%), Query Frame = 0
Match: A0A1U8FQZ8 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PHT91988.1}))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 439/672 (65.33%), Postives = 534/672 (79.46%), Query Frame = 0
Query: 2 FHEPVRDYSRTSFSPAWALEGQEVEGVD-TKGDLNSLDRQTDESVGLNGAHVNSVEGNDIANNNDDKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
F P +D+ SF+ A A + +E T+G+ + T + G ++VE DI + +E+ G+ + + +DVRAL L + D+V+EVLKD E+PLQVYSS+IR FG++ ++SA+AL WL+R+ KD+ SV N+FIYNSLLG +K+ KY +K+M+DM +EG++PN+VTYNTLM IY+ +GR ++ALNLF E+ K L SPASYSTAL AYRRLEDGFGA+ FF++ REKY+N E+GN + E+W+YEFAKLE+FI+RICYQV RQWLVK + STN+LKL DMDKA LQ +AEYERLVWACTREEHY VAKELYNRIR+MD+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AAKKRGIWRWGVRLLNKMEEKG++P SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+K+ +EPNLYAYTIM SIY QGKF IVDSII+EM+++ +EPTVVTFNAIISACARN G AYEWF+RMK N+ PNEVSYEMLIEAL NDGKPRLAY++YVRA GL+LS KAYDAVI SA+ Y +TID+ +GPRP E+KK+VQIRK++SEF +A +PRR +PFDR E++ T
Sbjct: 81 FRLPKKDFLGPSFAVAQASDVREQNSQSFTRGE-RGVGALTCVELEEKGDLSHNVEFGDIGSE------------EEEAGRVKGENVDVRALAQSLHFVRNADEVDEVLKDKVELPLQVYSSMIRGFGKDKKLNSAMALVEWLRRRSKDNIGSVSLNVFIYNSLLGAIKEARKYNFVDKVMNDMVSEGVEPNVVTYNTLMRIYIEQGRELEALNLFREMPKKRLFPSPASYSTALFAYRRLEDGFGAITFFVETREKYQNGEIGNIVEENWEYEFAKLEDFIIRICYQVMRQWLVKGEKASTNILKLLTDMDKARLQPSRAEYERLVWACTREEHYVVAKELYNRIREMDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAAKKRGIWRWGVRLLNKMEEKGLRPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKVGIEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVSTGVEPTVVTFNAIISACARNGMGSVAYEWFQRMKTQNITPNEVSYEMLIEALANDGKPRLAYELYVRAISEGLSLSTKAYDAVILSAQAYGATIDLSILGPRPPEKKKRVQIRKSLSEFCNIADVPRRSRPFDREEIFTART 739
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3ACR7 ((pentatricopeptide repeat-containing protein At3g46610-like {ECO:0000313|RefSeq:XP_016561652.1}))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 439/672 (65.33%), Postives = 534/672 (79.46%), Query Frame = 0
Match: A0A2G3ACR7 ((pentatricopeptide repeat-containing protein At3g46610-like {ECO:0000313|RefSeq:XP_016561652.1}))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 439/672 (65.33%), Postives = 534/672 (79.46%), Query Frame = 0
Query: 2 FHEPVRDYSRTSFSPAWALEGQEVEGVD-TKGDLNSLDRQTDESVGLNGAHVNSVEGNDIANNNDDKLQDHSIKGKEDFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
F P +D+ SF+ A A + +E T+G+ + T + G ++VE DI + +E+ G+ + + +DVRAL L + D+V+EVLKD E+PLQVYSS+IR FG++ ++SA+AL WL+R+ KD+ SV N+FIYNSLLG +K+ KY +K+M+DM +EG++PN+VTYNTLM IY+ +GR ++ALNLF E+ K L SPASYSTAL AYRRLEDGFGA+ FF++ REKY+N E+GN + E+W+YEFAKLE+FI+RICYQV RQWLVK + STN+LKL DMDKA LQ +AEYERLVWACTREEHY VAKELYNRIR+MD+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL+AAKKRGIWRWGVRLLNKMEEKG++P SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+K+ +EPNLYAYTIM SIY QGKF IVDSII+EM+++ +EPTVVTFNAIISACARN G AYEWF+RMK N+ PNEVSYEMLIEAL NDGKPRLAY++YVRA GL+LS KAYDAVI SA+ Y +TID+ +GPRP E+KK+VQIRK++SEF +A +PRR +PFDR E++ T
Sbjct: 81 FRLPKKDFLGPSFAVAQASDVREQNSQSFTRGE-RGVGALTCVELEEKGDLSHNVEFGDIGSE------------EEEAGRVKGENVDVRALAQSLHFVRNADEVDEVLKDKVELPLQVYSSMIRGFGKDKKLNSAMALVEWLRRRSKDNIGSVSLNVFIYNSLLGAIKEARKYNFVDKVMNDMVSEGVEPNVVTYNTLMRIYIEQGRELEALNLFREMPKKRLFPSPASYSTALFAYRRLEDGFGAITFFVETREKYQNGEIGNIVEENWEYEFAKLEDFIIRICYQVMRQWLVKGEKASTNILKLLTDMDKARLQPSRAEYERLVWACTREEHYVVAKELYNRIREMDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLSAAKKRGIWRWGVRLLNKMEEKGLRPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKVGIEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVSTGVEPTVVTFNAIISACARNGMGSVAYEWFQRMKTQNITPNEVSYEMLIEALANDGKPRLAYELYVRAISEGLSLSTKAYDAVILSAQAYGATIDLSILGPRPPEKKKRVQIRKSLSEFCNIADVPRRSRPFDREEIFTART 739
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P964 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSR87530.1}))
HSP 1 Score: 912.909 bits (2358), Expect = 0.000e+0
Identity = 438/674 (64.99%), Postives = 538/674 (79.82%), Query Frame = 0
Match: A0A2R6P964 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSR87530.1}))
HSP 1 Score: 912.909 bits (2358), Expect = 0.000e+0
Identity = 438/674 (64.99%), Postives = 538/674 (79.82%), Query Frame = 0
Query: 5 PVRDYSRTSFSPAWALEGQEVEGVDTKGDLNSLDRQTDESVGLNGAHVNSVEGND--IANNNDDKLQDHSIKGKE----DFGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS--SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPE 670
P +D R S + W LE Q + + + LD + G N A+ + V+ + + N++ L + S K + GK+R+ R+DVR+L L+ A+T DVEEVLKD E+PLQVYS++IR FG++ + A+AL WLK KKKD+ +S+GPNLFI+NSLLG +KQ+ +++E EK+++DMAA G+ PN+VTYNTLMGIY+ +GR V+ALNLFEEI+ KGL S ASYST L AYRRLEDGFGALKF+L+++EKY+N E+G D EDW+ EFAKLENF+V+ C V R+WLVK+DNL+TNVLKL +MD+AGLQTG+ EYERL+WACTREEHY VAKELY+RIR+ SEISLSVCNH+IWLMGKAKKWWAALE+YEDLL+KGPKPNNMSYELVVSHFN LLTAA+KRGIWRWG+RLL+KM+EKG+KPGSREWNAVL+ACSKASETSAA+Q+FKRM+E GEKPT+ISYGALLSALEKGKLYDEA +VW HM+K+ VEPNLYAYTI+ SIY Q KF IVDSII+EM IEPTVVT+NAIIS CA NN GG AYEWF +M+V N+ PNE++YEMLIEALT DGKP+LAYD Y+RA GLNL+ KAYDAVI+S++ Y +TIDV MGPRP ER+KKVQIRK SEFS LA +PRR +PF R+E Y +
Sbjct: 83 PNKDPFRASKALTWTLEAQAITSEFVEQNSGPLDGTS----GKNNANCDHVDRDTKLVLAKNENGLVNESEDEKGINNGEVGKKRTGRVDVRSLAWSLRFARTAKDVEEVLKDKGELPLQVYSTMIRGFGKDKRISCAMALVQWLKEKKKDANGTSIGPNLFIFNSLLGAVKQSQQFEEVEKVLNDMAAAGVVPNVVTYNTLMGIYIEQGRGVEALNLFEEIRRKGLSPSSASYSTTLVAYRRLEDGFGALKFYLELKEKYRNGEIGRDGGEDWENEFAKLENFMVQTCCHVMRRWLVKSDNLNTNVLKLLTEMDRAGLQTGRVEYERLMWACTREEHYIVAKELYSRIRERGSEISLSVCNHVIWLMGKAKKWWAALEIYEDLLEKGPKPNNMSYELVVSHFNILLTAARKRGIWRWGIRLLDKMQEKGLKPGSREWNAVLVACSKASETSAAMQVFKRMVEQGEKPTIISYGALLSALEKGKLYDEARRVWDHMIKVGVEPNLYAYTILVSIYTAQRKFNIVDSIIREMGVYGIEPTVVTYNAIISGCAYNNMGGEAYEWFHKMRVQNISPNEITYEMLIEALTKDGKPKLAYDFYLRAQNEGLNLASKAYDAVIQSSQIYGATIDVSIMGPRPPEREKKVQIRKEQSEFSNLADVPRRSEPFLRKETYTTQ 752
BLAST of DCAR_011279 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7W1T5 ((pentatricopeptide repeat-containing protein At3g46610-like {ECO:0000313|RefSeq:XP_009768594.1}))
HSP 1 Score: 912.524 bits (2357), Expect = 0.000e+0
Identity = 439/670 (65.52%), Postives = 527/670 (78.66%), Query Frame = 0
Match: A0A1U7W1T5 ((pentatricopeptide repeat-containing protein At3g46610-like {ECO:0000313|RefSeq:XP_009768594.1}))
HSP 1 Score: 912.524 bits (2357), Expect = 0.000e+0
Identity = 439/670 (65.52%), Postives = 527/670 (78.66%), Query Frame = 0
Query: 5 PVRDYSRTSFSPAWAL-EGQEVEGVDTKGDLNSLDRQTDESVGLNGAHVNSVEGNDIANNNDDKLQDHSIKGKED-FGKERSKRIDVRALGLDLQLAKTPDDVEEVLKDMNEVPLQVYSSLIRAFGRENNVDSALALFNWLKRKKKDS-SSVGPNLFIYNSLLGTLKQTGKYKEGEKLMSDMAAEGIQPNIVTYNTLMGIYLAEGRAVDALNLFEEIKMKGLCASPASYSTALAAYRRLEDGFGALKFFLDIREKYKNNELGNDLNEDWDYEFAKLENFIVRICYQVTRQWLVKTDNLSTNVLKLFADMDKAGLQTGKAEYERLVWACTREEHYAVAKELYNRIRDMDSEISLSVCNHIIWLMGKAKKWWAALEVYEDLLDKGPKPNNMSYELVVSHFNTLLTAAKKRGIWRWGVRLLNKMEEKGIKPGSREWNAVLIACSKASETSAAVQIFKRMIENGEKPTVISYGALLSALEKGKLYDEALQVWKHMLKMNVEPNLYAYTIMCSIYAGQGKFGIVDSIIQEMITSKIEPTVVTFNAIISACARNNFGGSAYEWFERMKVHNVEPNEVSYEMLIEALTNDGKPRLAYDMYVRAYISGLNLSLKAYDAVIESAETYNSTIDVGSMGPRPMERKKKVQIRKNMSEFSKLAGIPRRGKPFDRRELYAPET 671
P R + SF P++AL + E + +D S T G+ G +E + +N D D +K +E+ G+ + +++DVRAL L KT D+V+EVLKD E+PLQVYSS+IR FG++ + SA+AL WL+R+ KD+ S+ N+FIYNSLLG +K+ GKY+ +K++ DM +EG+ PN+VTYNTLM IY+ +GR ++ALNLF+E+ KGL SPA+YSTAL AYRRLEDG GA+ FF++ REKY+N E+GN E+W YEF KLENF +RICYQV RQWLVK +N STNV KL ADMDKA LQ AEYERLVWACTREEHY VAKELYNRIR+ D+EISLSVCNHIIWLMGKAKKWWAALE+YEDLLDKGPKPNNMSYEL+VSHFN LL AAKKRGIWRWGVRLLNKMEEKG+KP SREWNAVL+ACSKASETSAAVQIF+RM+E GEKPTVISYGALLSALEKGKLYDEALQVWKHM+KM VEPNLYAYTIM SIY QGKF IVDSII+EM+ + +EPTVVTFNAIIS CARN G AYEWF RM+ N+ PNEVSYEMLIEALTNDGKPRLAY++Y++A GL LS KAYDAVI S + Y ++ID+ +GPRP E+KK+VQIRKN+SEF +A +PRR + FDR E++ +T
Sbjct: 75 PFRRGKKDSFGPSFALTQASEEQAIDCDVIKQSSQSFTRGEGGVEGFSCVQLEEKRVLTHNYDD-GDCDVKSEEEEVGRVKGEKVDVRALAQSLHFVKTADEVDEVLKDKLELPLQVYSSMIRGFGKDKKLHSAMALVKWLRRRSKDNIGSITLNVFIYNSLLGAIKEAGKYEFVDKVLDDMVSEGVDPNVVTYNTLMRIYIEQGRELEALNLFKEMSKKGLFPSPATYSTALFAYRRLEDGLGAIAFFVETREKYQNGEIGNIEEENWGYEFPKLENFTIRICYQVMRQWLVKGENSSTNVPKLLADMDKARLQPSCAEYERLVWACTREEHYVVAKELYNRIRERDTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNMSYELIVSHFNILLNAAKKRGIWRWGVRLLNKMEEKGLKPSSREWNAVLVACSKASETSAAVQIFRRMVEKGEKPTVISYGALLSALEKGKLYDEALQVWKHMIKMGVEPNLYAYTIMASIYTAQGKFNIVDSIIKEMVFTGVEPTVVTFNAIISGCARNGMGSVAYEWFHRMQTQNITPNEVSYEMLIEALTNDGKPRLAYELYMKALNEGLCLSSKAYDAVISSTQAYGASIDLSILGPRPPEKKKRVQIRKNLSEFCNIADVPRRSRHFDREEIFTAQT 743
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A7J2 | E-Value: 0.000e+0, PID: 74.03 | PPR_long domain-containing protein {ECO:0000259|Pf... [more] |
| A0A7J0H814 | E-Value: 0.000e+0, PID: 65.53 | (Pentatricopeptide repeat (PPR-like) superfamily p... [more] |
| A0A1J6JG04 | E-Value: 0.000e+0, PID: 66.27 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A2G3D9X8 | E-Value: 0.000e+0, PID: 71.19 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| M1AY72 | E-Value: 0.000e+0, PID: 65.47 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A2G2XIQ2 | E-Value: 0.000e+0, PID: 65.18 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A1U8FQZ8 | E-Value: 0.000e+0, PID: 65.33 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A2G3ACR7 | E-Value: 0.000e+0, PID: 65.33 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| A0A2R6P964 | E-Value: 0.000e+0, PID: 64.99 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A1U7W1T5 | E-Value: 0.000e+0, PID: 65.52 | (pentatricopeptide repeat-containing protein At3g4... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |